Wall clock time and date at job start Tue Mar 31 2020 04:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99974 * 2 1 4 4 H 1.48505 * 109.46959 * 240.00442 * 3 2 1 5 5 H 1.48500 * 109.47385 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46859 * 120.00374 * 3 2 1 7 7 C 1.38814 * 119.99715 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99646 * 196.01902 * 7 2 1 9 9 N 1.36932 * 120.00061 * 16.01154 * 7 2 1 10 10 C 1.47085 * 120.87899 * 207.58161 * 9 7 2 11 11 C 1.53238 * 108.52003 * 231.16318 * 10 9 7 12 12 N 1.46904 * 109.33754 * 306.17156 * 11 10 9 13 13 C 1.38795 * 110.99512 * 187.25122 * 12 11 10 14 14 N 1.32329 * 119.79179 * 299.24009 * 13 12 11 15 15 C 1.31954 * 121.74560 * 180.28638 * 14 13 12 16 16 C 1.38173 * 121.11441 * 359.44368 * 15 14 13 17 17 C 1.38594 * 119.44968 * 0.26845 * 16 15 14 18 18 C 1.39462 * 118.39617 * 0.02562 * 17 16 15 19 19 C 1.48369 * 120.56810 * 180.02562 * 18 17 16 20 20 N 1.34069 * 126.68259 * 175.18262 * 19 18 17 21 21 N 1.28991 * 107.26723 * 180.02562 * 20 19 18 22 22 N 1.28728 * 108.94844 * 0.02562 * 21 20 19 23 23 H 0.97001 * 125.33078 * 180.02562 * 22 21 20 24 24 N 1.28869 * 109.33120 * 359.72225 * 22 21 20 25 25 C 1.46897 * 111.27016 * 63.10867 * 12 11 10 26 26 C 1.47078 * 120.88079 * 27.55755 * 9 7 2 27 27 H 0.97003 * 119.99790 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.62881 * 111.45880 * 10 9 7 29 29 H 1.08996 * 109.62783 * 350.87072 * 10 9 7 30 30 H 1.08997 * 109.49402 * 186.21015 * 11 10 9 31 31 H 1.09000 * 109.49349 * 66.12933 * 11 10 9 32 32 H 1.07997 * 119.44279 * 179.70887 * 15 14 13 33 33 H 1.08009 * 120.27017 * 180.29349 * 16 15 14 34 34 H 1.08001 * 120.79967 * 180.02562 * 17 16 15 35 35 H 1.08996 * 109.49931 * 56.84983 * 25 12 11 36 36 H 1.09000 * 109.49162 * 176.93642 * 25 12 11 37 37 H 1.09002 * 109.63071 * 248.54436 * 26 9 7 38 38 H 1.08996 * 109.62983 * 9.12731 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0588 -1.2205 0.2576 9 7 1.3654 -2.3649 -0.3282 10 6 1.8204 -3.6571 0.2071 11 6 1.9871 -4.6359 -0.9601 12 7 0.7389 -4.6884 -1.7330 13 6 0.7943 -5.6823 -2.7002 14 7 1.7173 -5.6277 -3.6469 15 6 1.8016 -6.5485 -4.5883 16 6 0.9309 -7.6210 -4.6180 17 6 -0.0511 -7.7286 -3.6460 18 6 -0.1244 -6.7401 -2.6649 19 6 -1.1564 -6.8079 -1.6011 20 7 -1.2821 -5.9809 -0.5533 21 7 -2.3000 -6.3812 0.1304 22 7 -2.8086 -7.4151 -0.4435 23 1 -3.5834 -7.9068 -0.1291 24 7 -2.1311 -7.6906 -1.5046 25 6 0.4296 -3.3847 -2.3351 26 6 0.1991 -2.3546 -1.2241 27 1 -0.4850 0.8401 0.0004 28 1 1.0801 -4.0447 0.9070 29 1 2.7759 -3.5270 0.7151 30 1 2.2170 -5.6284 -0.5726 31 1 2.7996 -4.2992 -1.6040 32 1 2.5667 -6.4648 -5.3458 33 1 1.0152 -8.3694 -5.3922 34 1 -0.7429 -8.5580 -3.6482 35 1 1.2638 -3.0654 -2.9597 36 1 -0.4701 -3.4698 -2.9445 37 1 -0.6971 -2.6170 -0.6618 38 1 0.0827 -1.3634 -1.6623 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606350206.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:32:48 Heat of formation + Delta-G solvation = 192.398025 kcal Electronic energy + Delta-G solvation = -24700.970549 eV Core-core repulsion = 21196.288089 eV Total energy + Delta-G solvation = -3504.682459 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.135 amu Computer time = 2.35 seconds Orbital eigenvalues (eV) -45.27910 -41.57300 -39.17551 -36.16850 -35.38729 -34.78047 -33.45652 -32.55810 -31.70280 -30.97822 -28.11515 -26.02262 -25.54942 -24.92610 -24.27889 -23.27662 -22.74181 -20.83432 -20.14858 -18.96421 -17.98721 -17.98170 -17.30250 -17.23117 -16.70266 -16.06134 -15.68848 -15.30416 -15.28383 -14.99750 -14.92725 -14.43880 -14.24617 -13.91577 -13.44688 -13.21750 -13.02116 -12.82738 -12.58490 -12.43140 -12.32177 -12.13137 -12.07172 -11.94888 -11.93654 -11.68125 -11.55368 -10.66292 -10.64953 -10.54858 -9.68984 -9.44605 -8.64850 -7.83417 -5.29038 -0.39105 0.20702 0.33705 1.45799 1.48430 1.51509 1.54975 1.58341 2.53530 2.67075 2.78749 2.78790 3.30798 3.31969 3.61590 3.67230 4.01666 4.06580 4.26138 4.31422 4.33885 4.48998 4.52838 4.59092 4.62188 4.66381 4.70775 4.84025 4.96799 5.11061 5.15717 5.20953 5.38283 5.55566 5.65267 5.70634 5.74705 6.01689 6.40420 6.44166 6.95933 7.16471 7.34742 7.86289 8.43154 9.23928 Molecular weight = 301.13amu Principal moments of inertia in cm(-1) A = 0.017977 B = 0.004792 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.187277 B = 5841.102873 C = 6902.163301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.050 4.050 3 Si 0.971 3.029 4 H -0.279 1.279 5 H -0.293 1.293 6 H -0.274 1.274 7 C -0.264 4.264 8 H 0.068 0.932 9 N -0.609 5.609 10 C 0.153 3.847 11 C 0.074 3.926 12 N -0.471 5.471 13 C 0.313 3.687 14 N -0.538 5.538 15 C 0.119 3.881 16 C -0.160 4.160 17 C -0.032 4.032 18 C -0.062 4.062 19 C 0.211 3.789 20 N -0.250 5.250 21 N -0.079 5.079 22 N -0.205 5.205 23 H 0.491 0.509 24 N -0.290 5.290 25 C 0.070 3.930 26 C 0.198 3.802 27 H 0.250 0.750 28 H 0.017 0.983 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.032 0.968 32 H 0.188 0.812 33 H 0.188 0.812 34 H 0.170 0.830 35 H 0.028 0.972 36 H 0.059 0.941 37 H -0.001 1.001 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.682 -21.609 -9.604 23.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.245 4.245 3 Si 0.798 3.202 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.200 1.200 7 C -0.394 4.394 8 H 0.086 0.914 9 N -0.332 5.332 10 C 0.027 3.973 11 C -0.054 4.054 12 N -0.194 5.194 13 C 0.083 3.917 14 N -0.251 5.251 15 C -0.040 4.040 16 C -0.179 4.179 17 C -0.059 4.059 18 C -0.069 4.069 19 C -0.069 4.069 20 N -0.121 5.121 21 N -0.075 5.075 22 N -0.055 5.055 23 H 0.350 0.650 24 N -0.144 5.144 25 C -0.058 4.058 26 C 0.072 3.928 27 H 0.059 0.941 28 H 0.035 0.965 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.050 0.950 32 H 0.205 0.795 33 H 0.205 0.795 34 H 0.188 0.812 35 H 0.046 0.954 36 H 0.078 0.922 37 H 0.017 0.983 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.880 -20.653 -8.649 22.576 hybrid contribution -0.147 0.394 -0.314 0.525 sum -3.027 -20.259 -8.963 22.359 Atomic orbital electron populations 1.70201 1.06716 1.25848 1.55476 1.25829 0.96061 1.01497 1.01142 0.85300 0.77501 0.79049 0.78324 1.20469 1.21941 1.19994 1.19504 0.92558 0.85750 1.41575 0.91424 1.44293 1.33964 1.02347 1.52633 1.21025 0.97472 0.85399 0.93420 1.22301 0.88579 0.99234 0.95299 1.60018 1.34457 1.04289 1.20646 1.20083 0.89941 0.91781 0.89916 1.67991 1.22663 1.29951 1.04473 1.23421 0.97657 0.88675 0.94260 1.22498 0.94879 1.00305 1.00268 1.21910 0.97309 0.96199 0.90530 1.18119 0.95158 0.98097 0.95561 1.23425 0.96009 0.90901 0.96599 1.76662 1.09212 1.21797 1.04435 1.79078 1.06174 1.01099 1.21104 1.47793 1.24280 1.19778 1.13654 0.65038 1.74760 1.07405 1.24873 1.07315 1.22436 0.98525 0.88264 0.96588 1.20472 0.88055 0.95328 0.88926 0.94121 0.96499 0.91924 0.90764 0.94954 0.79508 0.79452 0.81226 0.95413 0.92225 0.98272 0.92472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.06 11.16 21.65 0.24 -57.82 16 2 C -0.05 -2.93 4.95 84.86 0.42 -2.51 16 3 Si 0.97 46.63 29.58 68.60 2.03 48.66 16 4 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 5 H -0.29 -14.07 7.11 99.48 0.71 -13.37 16 6 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 7 C -0.26 -15.36 9.63 84.03 0.81 -14.55 16 8 H 0.07 3.81 7.88 -2.91 -0.02 3.78 16 9 N -0.61 -33.38 3.03 -698.12 -2.12 -35.50 16 10 C 0.15 7.14 6.69 86.35 0.58 7.72 16 11 C 0.07 2.99 5.39 86.38 0.47 3.46 16 12 N -0.47 -18.86 2.84 -700.16 -1.99 -20.84 16 13 C 0.31 10.51 5.28 133.40 0.70 11.21 16 14 N -0.54 -16.45 9.78 -192.56 -1.88 -18.33 16 15 C 0.12 2.34 11.16 84.66 0.95 3.29 16 16 C -0.16 -2.26 10.09 22.34 0.23 -2.03 16 17 C -0.03 -0.58 9.83 22.65 0.22 -0.36 16 18 C -0.06 -1.76 5.91 -19.82 -0.12 -1.87 16 19 C 0.21 6.40 7.90 137.33 1.09 7.48 16 20 N -0.25 -9.09 10.98 -52.22 -0.57 -9.67 16 21 N -0.08 -2.41 13.47 37.02 0.50 -1.92 16 22 N -0.21 -4.19 7.90 37.02 0.29 -3.90 16 23 H 0.49 4.53 8.96 -347.53 -3.12 1.41 16 24 N -0.29 -6.80 12.16 -52.17 -0.63 -7.44 16 25 C 0.07 3.13 5.42 86.39 0.47 3.60 16 26 C 0.20 10.66 5.40 86.35 0.47 11.12 16 27 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 28 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.06 2.77 7.95 -2.39 -0.02 2.75 16 30 H 0.07 2.70 8.09 -2.39 -0.02 2.68 16 31 H 0.03 1.36 8.05 -2.39 -0.02 1.34 16 32 H 0.19 2.36 8.06 -2.91 -0.02 2.34 16 33 H 0.19 0.89 8.06 -2.91 -0.02 0.87 16 34 H 0.17 2.18 7.96 -2.91 -0.02 2.16 16 35 H 0.03 1.29 8.08 -2.39 -0.02 1.27 16 36 H 0.06 2.54 8.09 -2.39 -0.02 2.52 16 37 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 38 H 0.06 3.38 6.16 -2.39 -0.01 3.36 16 Total: -1.00 -78.55 321.84 0.13 -78.42 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -2.01 Total: 1.77 kcal Atomic # 6 Polarization: 20.29 SS G_CDS: 6.27 Total: 26.56 kcal Atomic # 7 Polarization: -149.26 SS G_CDS: -6.17 Total: -155.42 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.66 kcal Total: -78.55 0.13 -78.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606350206.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 270.822 kcal (2) G-P(sol) polarization free energy of solvation -78.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 192.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 192.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.35 seconds