Wall clock time and date at job start Tue Mar 31 2020 04:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34231 * 117.00217 * 2 1 4 4 O 1.20826 * 119.99819 * 0.02562 * 3 2 1 5 5 C 1.50695 * 120.00203 * 180.02562 * 3 2 1 6 6 H 1.08994 * 109.45238 * 328.75845 * 5 3 2 7 7 C 1.53036 * 109.46415 * 88.73283 * 5 3 2 8 8 C 1.53119 * 109.31346 * 179.21028 * 7 5 3 9 9 C 1.53113 * 109.16173 * 302.33279 * 8 7 5 10 10 H 1.08999 * 109.50284 * 177.59579 * 9 8 7 11 11 C 1.50709 * 109.50141 * 297.70645 * 9 8 7 12 12 O 1.20819 * 119.99861 * 120.00391 * 11 9 8 13 13 O 1.34227 * 119.99990 * 300.00337 * 11 9 8 14 14 C 1.53030 * 109.28295 * 57.64878 * 9 8 7 15 15 N 1.46843 * 109.52505 * 300.82296 * 14 9 8 16 16 C 1.46900 * 111.00381 * 185.83931 * 15 14 9 17 17 C 1.53000 * 109.47085 * 296.64738 * 16 15 14 18 18 H 1.08999 * 109.47307 * 52.35315 * 17 16 15 19 19 O 1.42901 * 109.47110 * 292.35795 * 17 16 15 20 20 C 1.50701 * 109.47281 * 172.35403 * 17 16 15 21 21 H 1.08003 * 119.99866 * 0.02562 * 20 17 16 22 22 C 1.37875 * 119.99904 * 179.97438 * 20 17 16 23 23 N 1.31521 * 120.00163 * 0.02562 * 22 20 17 24 24 Si 1.86800 * 119.99978 * 180.02562 * 22 20 17 25 25 H 1.48504 * 109.46928 * 60.00235 * 24 22 20 26 26 H 1.48499 * 109.47396 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.46871 * 300.00461 * 24 22 20 28 28 H 1.09007 * 109.46698 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46940 * 299.99308 * 1 2 3 30 30 H 1.09002 * 109.47034 * 59.99882 * 1 2 3 31 31 H 1.09008 * 109.49970 * 59.25410 * 7 5 3 32 32 H 1.08998 * 109.50321 * 299.17517 * 7 5 3 33 33 H 1.09006 * 109.51895 * 62.23365 * 8 7 5 34 34 H 1.09000 * 109.52712 * 182.41913 * 8 7 5 35 35 H 0.96698 * 116.99983 * 179.97438 * 13 11 9 36 36 H 1.09002 * 109.46195 * 60.83624 * 14 9 8 37 37 H 1.09005 * 109.46396 * 180.80320 * 14 9 8 38 38 H 1.08997 * 109.46958 * 56.64663 * 16 15 14 39 39 H 1.08996 * 109.47578 * 176.64522 * 16 15 14 40 40 H 0.96705 * 113.99613 * 300.00289 * 19 17 16 41 41 H 0.96999 * 119.99651 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9750 0.4162 0.5321 7 6 4.0767 1.2700 -1.4433 8 6 5.6046 1.3701 -1.4404 9 6 6.0235 2.6423 -0.6985 10 1 7.1112 2.6972 -0.6559 11 6 5.4861 3.8484 -1.4250 12 8 4.7308 4.6054 -0.8627 13 8 5.8466 4.0815 -2.6968 14 6 5.4575 2.6079 0.7229 15 7 3.9933 2.5127 0.6660 16 6 3.4063 2.6167 2.0086 17 6 3.8723 1.4353 2.8618 18 1 4.9598 1.3689 2.8274 19 8 3.3050 0.2267 2.3525 20 6 3.4263 1.6381 4.2870 21 1 2.8660 2.5210 4.5570 22 6 3.7326 0.6959 5.2458 23 7 4.4144 -0.3796 4.9169 24 14 3.1791 0.9468 7.0122 25 1 1.6975 1.0374 7.0585 26 1 3.6315 -0.1997 7.8404 27 1 3.7686 2.2027 7.5419 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 3.6573 2.1208 -1.9805 32 1 3.7735 0.3448 -1.9334 33 1 6.0256 0.4996 -0.9371 34 1 5.9691 1.4101 -2.4669 35 1 5.4758 4.8673 -3.1212 36 1 5.8574 1.7430 1.2522 37 1 5.7421 3.5191 1.2492 38 1 3.7259 3.5492 2.4736 39 1 2.3191 2.6030 1.9319 40 1 2.3380 0.2153 2.3531 41 1 4.6301 -1.0423 5.5916 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606386993.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:27:24 Heat of formation + Delta-G solvation = -238.833542 kcal Electronic energy + Delta-G solvation = -27133.988442 eV Core-core repulsion = 23206.419206 eV Total energy + Delta-G solvation = -3927.569236 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 301.145 amu Computer time = 2.35 seconds Orbital eigenvalues (eV) -42.14318 -41.14165 -39.56944 -37.51166 -37.30597 -36.78063 -34.46082 -34.19406 -32.69840 -30.07377 -28.78598 -27.04277 -26.09668 -24.71876 -23.61768 -22.67187 -21.60274 -20.28358 -19.15331 -18.72693 -18.58585 -17.76781 -17.37526 -17.14539 -16.98704 -16.68808 -16.31659 -16.13815 -15.73370 -15.13846 -15.03108 -14.72768 -14.45726 -14.01289 -13.99415 -13.90011 -13.61974 -13.28493 -12.98712 -12.90762 -12.83237 -12.80483 -12.43659 -12.30769 -12.25035 -12.11011 -11.80900 -11.67544 -11.49357 -11.40342 -11.17392 -11.06510 -10.71703 -10.56922 -8.86098 -8.13448 -6.40782 1.21439 1.38592 1.38803 1.47253 1.48742 1.75868 2.27755 2.36671 2.97385 3.09139 3.60948 3.71541 3.87408 3.93958 4.03908 4.18527 4.32190 4.33826 4.35982 4.45112 4.48379 4.52181 4.69854 4.72453 4.76534 4.84461 4.86898 4.95926 5.05729 5.08965 5.28893 5.41104 5.54673 5.64612 5.82485 5.86279 6.12962 6.14326 6.67304 6.86914 7.21224 7.23878 7.40649 8.86968 Molecular weight = 301.14amu Principal moments of inertia in cm(-1) A = 0.015368 B = 0.005754 C = 0.004775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.495941 B = 4865.289460 C = 5861.861844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.359 6.359 3 C 0.476 3.524 4 O -0.529 6.529 5 C 0.081 3.919 6 H 0.101 0.899 7 C -0.109 4.109 8 C -0.101 4.101 9 C -0.074 4.074 10 H 0.148 0.852 11 C 0.483 3.517 12 O -0.528 6.528 13 O -0.514 6.514 14 C 0.066 3.934 15 N -0.511 5.511 16 C 0.039 3.961 17 C 0.202 3.798 18 H 0.044 0.956 19 O -0.559 6.559 20 C -0.592 4.592 21 H 0.048 0.952 22 C 0.036 3.964 23 N -0.890 5.890 24 Si 0.953 3.047 25 H -0.273 1.273 26 H -0.280 1.280 27 H -0.271 1.271 28 H 0.133 0.867 29 H 0.051 0.949 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.112 0.888 35 H 0.421 0.579 36 H 0.054 0.946 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.053 0.947 40 H 0.343 0.657 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.212 0.777 -15.751 15.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.275 6.275 3 C 0.319 3.681 4 O -0.418 6.418 5 C -0.028 4.028 6 H 0.119 0.881 7 C -0.147 4.147 8 C -0.138 4.138 9 C -0.093 4.093 10 H 0.166 0.834 11 C 0.326 3.674 12 O -0.415 6.415 13 O -0.328 6.328 14 C -0.062 4.062 15 N -0.236 5.236 16 C -0.089 4.089 17 C 0.144 3.856 18 H 0.062 0.938 19 O -0.363 6.363 20 C -0.630 4.630 21 H 0.067 0.933 22 C -0.168 4.168 23 N -0.526 5.526 24 Si 0.778 3.222 25 H -0.198 1.198 26 H -0.205 1.205 27 H -0.196 1.196 28 H 0.151 0.849 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.118 0.882 33 H 0.114 0.886 34 H 0.130 0.870 35 H 0.281 0.719 36 H 0.072 0.928 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.188 0.812 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.476 1.008 -15.721 15.946 hybrid contribution -1.372 0.510 1.757 2.287 sum 1.103 1.518 -13.963 14.089 Atomic orbital electron populations 1.23509 0.75311 1.05565 1.02117 1.86551 1.24563 1.32723 1.83632 1.23827 0.92326 0.81047 0.70872 1.90614 1.67710 1.37392 1.46065 1.21609 0.87013 0.95422 0.98801 0.88149 1.21697 0.97683 1.03305 0.91976 1.21614 0.93514 0.95850 1.02840 1.21264 1.03504 0.91631 0.92916 0.83435 1.23460 0.77612 0.86356 0.80015 1.90779 1.33976 1.48439 1.68355 1.84470 1.69847 1.51090 1.27351 1.22023 0.86677 1.01871 0.95631 1.62128 1.09000 1.33673 1.18757 1.22791 0.98858 0.99469 0.87812 1.19924 0.93832 0.81231 0.90631 0.93811 1.86497 1.22231 1.42212 1.85370 1.21907 1.38236 1.07133 0.95711 0.93337 1.25744 0.93998 0.94499 1.02537 1.70152 1.37769 1.09782 1.34906 0.85725 0.78800 0.77828 0.79884 1.19842 1.20501 1.19614 0.84919 0.93018 0.91619 0.92659 0.88189 0.88589 0.86987 0.71862 0.92801 0.90657 0.91711 0.92813 0.81222 0.92825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 10.56 113.37 1.20 1.92 16 2 O -0.36 -11.87 10.03 -51.39 -0.52 -12.39 16 3 C 0.48 17.86 4.65 71.23 0.33 18.19 16 4 O -0.53 -22.84 14.92 21.97 0.33 -22.51 16 5 C 0.08 2.82 1.69 44.17 0.07 2.89 16 6 H 0.10 3.85 5.69 -2.39 -0.01 3.84 16 7 C -0.11 -2.82 5.10 30.65 0.16 -2.67 16 8 C -0.10 -2.00 5.46 30.67 0.17 -1.83 16 9 C -0.07 -1.72 3.13 -11.49 -0.04 -1.75 16 10 H 0.15 2.38 8.14 -2.39 -0.02 2.36 16 11 C 0.48 12.61 6.34 71.24 0.45 13.07 16 12 O -0.53 -18.88 16.00 21.98 0.35 -18.53 16 13 O -0.51 -9.36 13.29 -51.39 -0.68 -10.05 16 14 C 0.07 2.13 3.99 86.32 0.34 2.48 16 15 N -0.51 -19.59 3.32 -875.34 -2.91 -22.50 16 16 C 0.04 1.77 4.69 86.30 0.40 2.17 16 17 C 0.20 10.13 2.53 29.85 0.08 10.21 16 18 H 0.04 2.35 6.25 -2.39 -0.01 2.34 16 19 O -0.56 -27.53 9.08 -148.98 -1.35 -28.88 16 20 C -0.59 -32.85 8.75 25.60 0.22 -32.63 16 21 H 0.05 2.70 7.74 -2.91 -0.02 2.68 16 22 C 0.04 1.98 5.40 84.65 0.46 2.44 16 23 N -0.89 -51.40 12.84 21.45 0.28 -51.12 16 24 Si 0.95 43.49 29.54 68.60 2.03 45.52 16 25 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 26 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 27 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 28 H 0.13 2.40 8.14 -2.38 -0.02 2.38 16 29 H 0.05 1.43 8.13 -2.39 -0.02 1.41 16 30 H 0.07 1.55 8.13 -2.39 -0.02 1.53 16 31 H 0.05 1.58 7.35 -2.38 -0.02 1.56 16 32 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.10 1.75 8.14 -2.38 -0.02 1.74 16 34 H 0.11 1.60 8.07 -2.39 -0.02 1.59 16 35 H 0.42 4.69 9.10 -74.06 -0.67 4.01 16 36 H 0.05 1.85 6.53 -2.39 -0.02 1.83 16 37 H 0.07 2.56 8.04 -2.38 -0.02 2.55 16 38 H 0.06 3.02 8.09 -2.39 -0.02 3.00 16 39 H 0.05 2.62 5.95 -2.39 -0.01 2.60 16 40 H 0.34 16.54 7.66 -74.05 -0.57 15.97 16 41 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 Total: -1.00 -74.63 330.23 1.20 -73.43 By element: Atomic # 1 Polarization: 32.71 SS G_CDS: -0.16 Total: 32.55 kcal Atomic # 6 Polarization: 10.64 SS G_CDS: 3.85 Total: 14.48 kcal Atomic # 7 Polarization: -70.99 SS G_CDS: -2.63 Total: -73.62 kcal Atomic # 8 Polarization: -90.48 SS G_CDS: -1.87 Total: -92.36 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -74.63 1.20 -73.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606386993.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -165.406 kcal (2) G-P(sol) polarization free energy of solvation -74.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -240.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -238.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.35 seconds