Wall clock time and date at job start Tue Mar 31 2020 03:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.30379 * 2 1 4 4 C 1.54380 * 110.34366 * 122.29195 * 2 1 3 5 5 N 1.48153 * 104.62078 * 142.74076 * 4 2 1 6 6 C 1.34765 * 127.84312 * 140.39030 * 5 4 2 7 7 O 1.21286 * 120.00465 * 179.97438 * 6 5 4 8 8 C 1.50707 * 119.99971 * 359.97438 * 6 5 4 9 9 S 1.81001 * 109.46916 * 180.02562 * 8 6 5 10 10 C 1.76213 * 99.99654 * 179.97438 * 9 8 6 11 11 H 1.07998 * 119.99633 * 0.02562 * 10 9 8 12 12 C 1.38791 * 119.99765 * 179.97438 * 10 9 8 13 13 N 1.31635 * 120.00179 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99977 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47011 * 0.02562 * 14 12 10 16 16 H 1.48505 * 109.47014 * 120.00091 * 14 12 10 17 17 H 1.48495 * 109.47171 * 240.00199 * 14 12 10 18 18 C 1.48151 * 104.31722 * 320.41175 * 5 4 2 19 19 C 1.54289 * 110.34275 * 237.82811 * 2 1 3 20 20 H 1.09003 * 110.34086 * 122.14902 * 19 2 1 21 21 N 1.46904 * 110.34191 * 0.02562 * 19 2 1 22 22 C 1.46904 * 110.99563 * 164.29042 * 21 19 2 23 23 C 1.50701 * 109.46631 * 179.97438 * 22 21 19 24 24 N 1.34782 * 120.00077 * 180.02562 * 23 22 21 25 25 O 1.21287 * 120.00193 * 359.97438 * 23 22 21 26 26 H 1.09003 * 109.46695 * 175.88825 * 1 2 3 27 27 H 1.08993 * 109.47341 * 295.88123 * 1 2 3 28 28 H 1.09000 * 109.47393 * 55.88536 * 1 2 3 29 29 H 1.08998 * 110.40684 * 261.52072 * 4 2 1 30 30 H 1.08992 * 110.41158 * 23.95526 * 4 2 1 31 31 H 1.09003 * 109.46651 * 299.99521 * 8 6 5 32 32 H 1.08994 * 109.46878 * 59.99858 * 8 6 5 33 33 H 0.97003 * 119.99956 * 180.02562 * 13 12 10 34 34 H 1.08997 * 110.41183 * 280.79994 * 18 5 4 35 35 H 1.09005 * 110.40077 * 158.36872 * 18 5 4 36 36 H 1.00900 * 110.99859 * 40.33682 * 21 19 2 37 37 H 1.08998 * 109.47234 * 299.99748 * 22 21 19 38 38 H 1.08993 * 109.46982 * 60.00203 * 22 21 19 39 39 H 0.96992 * 119.99572 * 359.97438 * 24 23 22 40 40 H 0.96991 * 119.99774 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0667 -0.7733 1.2236 5 7 3.2665 -1.4824 0.7211 6 6 4.4426 -1.6674 1.3525 7 8 5.3367 -2.2756 0.8034 8 6 4.6468 -1.1185 2.7411 9 16 6.3150 -1.5274 3.3122 10 6 6.2811 -0.7868 4.9108 11 1 5.3922 -0.2764 5.2507 12 6 7.3966 -0.8605 5.7334 13 7 8.4799 -1.4831 5.3192 14 14 7.3610 -0.0748 7.4278 15 1 6.0367 0.5586 7.6520 16 1 7.5926 -1.1160 8.4611 17 1 8.4253 0.9569 7.5174 18 6 2.8801 -1.9415 -0.6335 19 6 2.0663 -0.7703 -1.2245 20 1 2.7080 -0.1263 -1.8260 21 7 0.9523 -1.2797 -2.0355 22 6 1.4140 -1.6811 -3.3711 23 6 0.2465 -2.1976 -4.1718 24 7 0.4332 -2.6260 -5.4360 25 8 -0.8610 -2.2288 -3.6783 26 1 -0.3633 -1.0251 -0.0737 27 1 -0.3633 0.4485 0.9245 28 1 -0.3634 0.5764 -0.8508 29 1 2.3400 -0.0816 2.0204 30 1 1.3236 -1.4877 1.5777 31 1 4.5239 -0.0355 2.7254 32 1 3.9131 -1.5577 3.4169 33 1 9.2594 -1.5349 5.8943 34 1 2.2640 -2.8383 -0.5695 35 1 3.7673 -2.1311 -1.2378 36 1 0.2103 -0.5989 -2.0988 37 1 1.8508 -0.8208 -3.8783 38 1 2.1642 -2.4660 -3.2754 39 1 1.3190 -2.6014 -5.8305 40 1 -0.3183 -2.9581 -5.9515 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673847041.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:54:28 Heat of formation + Delta-G solvation = -61.730858 kcal Electronic energy + Delta-G solvation = -21935.056372 eV Core-core repulsion = 18490.212507 eV Total energy + Delta-G solvation = -3444.843866 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.125 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.26676 -39.55394 -37.86586 -34.90752 -34.04179 -32.44288 -32.39404 -30.21944 -28.32551 -26.50849 -25.96449 -25.43277 -23.04871 -21.02647 -19.77365 -19.31729 -17.99886 -17.63966 -17.02184 -16.74669 -16.34838 -15.89991 -15.21028 -15.13846 -14.97445 -14.80014 -14.27077 -13.93288 -13.58349 -13.49451 -13.17315 -12.93118 -12.51359 -12.37605 -12.17751 -12.04732 -11.79509 -11.30596 -11.06949 -11.05423 -11.01247 -10.93771 -10.75391 -10.29720 -10.09921 -9.80094 -9.40469 -9.07062 -8.87283 -8.53992 -8.22430 -6.49742 -6.21385 -3.91904 2.26648 2.82688 3.02021 3.07280 3.21956 3.26732 3.31695 3.60553 3.95142 4.19599 4.24550 4.40442 4.52197 4.67934 4.79865 4.95153 5.06170 5.12719 5.13864 5.21341 5.27406 5.40584 5.53097 5.57546 5.72635 5.76032 5.80315 5.86684 5.95608 6.12239 6.14940 6.27152 6.36286 6.57133 6.88790 7.00421 7.60377 7.74743 7.87720 8.35977 8.56994 9.24060 10.86114 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.036260 B = 0.002619 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.007560 B =10686.843940 C =11315.481497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.105 4.105 3 H 0.082 0.918 4 C 0.109 3.891 5 N -0.630 5.630 6 C 0.555 3.445 7 O -0.517 6.517 8 C -0.146 4.146 9 S -0.062 6.062 10 C -0.533 4.533 11 H 0.073 0.927 12 C 0.073 3.927 13 N -0.868 5.868 14 Si 0.919 3.081 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.280 1.280 18 C 0.115 3.885 19 C 0.075 3.925 20 H 0.057 0.943 21 N -0.663 5.663 22 C 0.034 3.966 23 C 0.516 3.484 24 N -0.859 5.859 25 O -0.529 6.529 26 H 0.077 0.923 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.268 0.732 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.356 0.644 37 H 0.062 0.938 38 H 0.106 0.894 39 H 0.402 0.598 40 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.228 2.843 -19.038 25.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.125 4.125 3 H 0.101 0.899 4 C -0.015 4.015 5 N -0.367 5.367 6 C 0.344 3.656 7 O -0.392 6.392 8 C -0.296 4.296 9 S 0.165 5.835 10 C -0.682 4.682 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.206 1.206 18 C -0.009 4.009 19 C -0.036 4.036 20 H 0.075 0.925 21 N -0.300 5.300 22 C -0.099 4.099 23 C 0.301 3.699 24 N -0.424 5.424 25 O -0.404 6.404 26 H 0.096 0.904 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.180 0.820 37 H 0.080 0.920 38 H 0.124 0.876 39 H 0.230 0.770 40 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -16.206 1.296 -18.988 24.997 hybrid contribution -0.720 1.933 0.775 2.204 sum -16.925 3.230 -18.213 25.072 Atomic orbital electron populations 1.21734 0.93435 1.03488 1.01509 1.22211 0.96899 0.99241 0.94115 0.89917 1.22425 0.87111 0.95627 0.96332 1.48924 1.13241 1.57409 1.17120 1.19986 0.79588 0.78983 0.87072 1.90706 1.40700 1.40613 1.67141 1.23498 1.07644 1.03686 0.94819 1.85401 1.06387 1.73775 1.17930 1.22897 1.02878 1.41140 1.01242 0.90868 1.24998 0.94565 0.95208 0.98874 1.70033 1.03222 1.40143 1.36906 0.86111 0.78240 0.78887 0.82219 1.19607 1.20559 1.20576 1.22243 0.98269 0.96483 0.83855 1.22467 0.91668 0.95316 0.94118 0.92549 1.60358 1.10630 1.47459 1.11524 1.21898 0.95903 1.01584 0.90482 1.20611 0.90496 0.77058 0.81775 1.43867 1.14552 1.68501 1.15439 1.90767 1.25819 1.54089 1.69752 0.90416 0.92163 0.92679 0.89942 0.90649 0.89310 0.89237 0.92245 0.90210 0.90345 0.82012 0.92010 0.87644 0.77023 0.76741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 7.81 37.16 0.29 -0.78 16 2 C -0.10 -0.92 3.66 -89.22 -0.33 -1.25 16 3 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 4 C 0.11 1.21 6.46 -2.41 -0.02 1.19 16 5 N -0.63 -9.27 3.32 -169.31 -0.56 -9.83 16 6 C 0.55 10.87 7.93 -10.99 -0.09 10.79 16 7 O -0.52 -12.12 16.13 5.55 0.09 -12.03 16 8 C -0.15 -3.03 5.13 36.01 0.18 -2.84 16 9 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 10 C -0.53 -15.25 9.50 30.94 0.29 -14.95 16 11 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 12 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 13 N -0.87 -26.24 13.22 55.49 0.73 -25.50 16 14 Si 0.92 21.45 29.55 -169.99 -5.02 16.43 16 15 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 16 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 18 C 0.12 1.40 6.36 -2.41 -0.02 1.39 16 19 C 0.07 0.68 3.35 -66.31 -0.22 0.46 16 20 H 0.06 0.50 7.96 -51.93 -0.41 0.08 16 21 N -0.66 -5.55 4.95 -106.51 -0.53 -6.08 16 22 C 0.03 0.22 6.01 -4.97 -0.03 0.19 16 23 C 0.52 4.08 8.14 -10.98 -0.09 3.99 16 24 N -0.86 -3.54 8.87 31.22 0.28 -3.26 16 25 O -0.53 -6.54 17.04 5.55 0.09 -6.45 16 26 H 0.08 0.67 7.54 -51.93 -0.39 0.28 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.36 7.06 -51.93 -0.37 -0.01 16 29 H 0.08 0.89 7.30 -51.93 -0.38 0.51 16 30 H 0.08 0.79 7.86 -51.93 -0.41 0.38 16 31 H 0.09 1.70 7.95 -51.91 -0.41 1.29 16 32 H 0.09 1.74 8.14 -51.92 -0.42 1.31 16 33 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 34 H 0.08 0.98 8.06 -51.93 -0.42 0.56 16 35 H 0.08 1.02 7.88 -51.93 -0.41 0.61 16 36 H 0.36 2.93 5.89 -39.29 -0.23 2.70 16 37 H 0.06 0.29 8.09 -51.93 -0.42 -0.13 16 38 H 0.11 0.63 7.87 -51.93 -0.41 0.22 16 39 H 0.40 0.51 8.83 -40.82 -0.36 0.15 16 40 H 0.40 1.42 8.93 -40.82 -0.36 1.06 16 LS Contribution 346.59 15.07 5.22 5.22 Total: -1.00 -37.19 346.59 -7.82 -45.00 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -5.80 Total: 0.22 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: -0.11 Total: 0.17 kcal Atomic # 7 Polarization: -44.59 SS G_CDS: -0.08 Total: -44.67 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: 0.18 Total: -18.48 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -37.19 -7.82 -45.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673847041.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.727 kcal (2) G-P(sol) polarization free energy of solvation -37.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds