Wall clock time and date at job start Tue Mar 31 2020 03:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86792 * 119.99952 * 2 1 4 4 H 1.48503 * 109.47366 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47163 * 299.99806 * 3 2 1 6 6 H 1.48501 * 109.47238 * 59.99907 * 3 2 1 7 7 C 1.38800 * 119.99915 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99963 * 180.02562 * 7 2 1 9 9 S 1.76200 * 120.00132 * 359.97438 * 7 2 1 10 10 C 1.81000 * 99.99987 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47128 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00075 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00082 * 179.97438 * 11 10 9 14 14 C 1.46507 * 120.00009 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.46806 * 180.02562 * 14 13 11 16 16 H 1.08997 * 110.28913 * 55.67305 * 15 14 13 17 17 C 1.54257 * 110.32544 * 293.54710 * 15 14 13 18 18 C 1.54379 * 105.06256 * 241.00495 * 17 15 14 19 19 N 1.48562 * 104.69842 * 336.08765 * 18 17 15 20 20 C 1.46894 * 111.00344 * 159.09785 * 19 18 17 21 21 C 1.50701 * 109.47159 * 69.87242 * 20 19 18 22 22 N 1.34771 * 120.00342 * 179.97438 * 21 20 19 23 23 O 1.21289 * 119.99567 * 0.02562 * 21 20 19 24 24 C 1.48856 * 104.07618 * 39.46842 * 19 18 17 25 25 H 0.96998 * 120.00330 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.47364 * 59.99916 * 10 9 7 27 27 H 1.09002 * 109.47017 * 300.00150 * 10 9 7 28 28 H 0.96996 * 119.99785 * 0.02562 * 13 11 10 29 29 H 1.08997 * 109.47005 * 60.00362 * 14 13 11 30 30 H 1.08998 * 109.46793 * 300.00202 * 14 13 11 31 31 H 1.08998 * 110.32238 * 122.10867 * 17 15 14 32 32 H 1.09002 * 110.32308 * 359.90413 * 17 15 14 33 33 H 1.09002 * 110.41258 * 94.92615 * 18 17 15 34 34 H 1.09002 * 110.41328 * 217.24846 * 18 17 15 35 35 H 1.09001 * 109.47519 * 189.87201 * 20 19 18 36 36 H 1.09003 * 109.46928 * 309.87844 * 20 19 18 37 37 H 0.96998 * 120.00312 * 0.02562 * 22 21 20 38 38 H 0.97004 * 120.00211 * 180.02562 * 22 21 20 39 39 H 1.09003 * 110.39541 * 201.75499 * 24 19 18 40 40 H 1.09004 * 110.49212 * 79.38626 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9874 -5.3027 -0.0012 12 8 0.7911 -5.5023 -0.0011 13 7 2.8442 -6.3431 -0.0018 14 6 2.3304 -7.7151 -0.0019 15 6 3.5025 -8.6985 -0.0020 16 1 4.1627 -8.4999 0.8423 17 6 4.2844 -8.6001 -1.3281 18 6 4.1741 -10.0026 -1.9639 19 7 3.9193 -10.9160 -0.8202 20 6 3.3102 -12.1727 -1.2756 21 6 4.3274 -12.9732 -2.0473 22 7 3.9906 -14.1713 -2.5645 23 8 5.4495 -12.5396 -2.2022 24 6 2.9856 -10.1522 0.0520 25 1 -0.4850 0.8400 -0.0004 26 1 3.1245 -3.7314 0.8894 27 1 3.1245 -3.7313 -0.8905 28 1 3.8009 -6.1835 -0.0015 29 1 1.7215 -7.8750 -0.8916 30 1 1.7222 -7.8753 0.8884 31 1 5.3283 -8.3532 -1.1347 32 1 3.8321 -7.8524 -1.9796 33 1 3.3438 -10.0360 -2.6693 34 1 5.1063 -10.2685 -2.4623 35 1 2.9744 -12.7475 -0.4125 36 1 2.4583 -11.9515 -1.9186 37 1 3.0934 -14.5183 -2.4403 38 1 4.6455 -14.6868 -3.0609 39 1 3.0236 -10.5316 1.0732 40 1 1.9685 -10.2087 -0.3361 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691118531.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:46 Heat of formation + Delta-G solvation = -73.591086 kcal Electronic energy + Delta-G solvation = -21357.972987 eV Core-core repulsion = 17912.614824 eV Total energy + Delta-G solvation = -3445.358164 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.125 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.32698 -39.34821 -38.41163 -34.94623 -34.08859 -32.42922 -32.34676 -30.03750 -28.99437 -27.33007 -25.51157 -24.49722 -22.12801 -20.96058 -20.28415 -20.20362 -17.95420 -17.70384 -17.20570 -16.61649 -16.30863 -15.86601 -15.63265 -15.18528 -15.00500 -14.79879 -14.37648 -13.96504 -13.88991 -13.45265 -13.16164 -12.90477 -12.66188 -12.51058 -12.27168 -11.89785 -11.87978 -11.45901 -11.08068 -11.04810 -11.01234 -10.79024 -10.73467 -10.28770 -10.11733 -9.79835 -9.40239 -9.07227 -8.90122 -8.85642 -8.22458 -6.49279 -6.21288 -3.91606 2.24404 2.86904 3.06437 3.11254 3.22174 3.29000 3.33916 3.65423 3.75128 4.21040 4.28647 4.38016 4.52359 4.55688 4.77302 4.81214 4.94160 5.10368 5.13988 5.17033 5.27533 5.32213 5.39233 5.57055 5.63094 5.71855 5.86610 5.88111 5.92385 6.00110 6.15693 6.29781 6.42553 6.46053 6.63188 6.89750 7.60681 7.72448 7.86658 8.36190 8.62571 9.24274 10.86218 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.047477 B = 0.002106 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.621792 B =13294.847941 C =13592.493112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.073 0.927 9 S -0.062 6.062 10 C -0.153 4.153 11 C 0.532 3.468 12 O -0.519 6.519 13 N -0.738 5.738 14 C 0.130 3.870 15 C -0.103 4.103 16 H 0.089 0.911 17 C -0.123 4.123 18 C 0.032 3.968 19 N -0.492 5.492 20 C 0.022 3.978 21 C 0.517 3.483 22 N -0.860 5.860 23 O -0.523 6.523 24 C 0.040 3.960 25 H 0.268 0.732 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.399 0.601 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.041 0.959 34 H 0.094 0.906 35 H 0.106 0.894 36 H 0.068 0.932 37 H 0.400 0.600 38 H 0.402 0.598 39 H 0.088 0.912 40 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.676 -27.452 -2.941 28.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.137 4.137 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.165 5.835 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.394 6.394 13 N -0.392 5.392 14 C 0.005 3.995 15 C -0.122 4.122 16 H 0.108 0.892 17 C -0.161 4.161 18 C -0.095 4.095 19 N -0.216 5.216 20 C -0.110 4.110 21 C 0.301 3.699 22 N -0.425 5.425 23 O -0.397 6.397 24 C -0.088 4.088 25 H 0.077 0.923 26 H 0.108 0.892 27 H 0.108 0.892 28 H 0.233 0.767 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.059 0.941 34 H 0.112 0.888 35 H 0.124 0.876 36 H 0.086 0.914 37 H 0.228 0.772 38 H 0.233 0.767 39 H 0.106 0.894 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.677 -27.387 -2.656 28.314 hybrid contribution 1.394 0.994 -0.590 1.810 sum 8.071 -26.393 -3.246 27.790 Atomic orbital electron populations 1.70029 1.05949 1.27333 1.47009 1.25000 0.95037 0.99056 0.94561 0.86110 0.79599 0.81860 0.77885 1.19604 1.20578 1.20574 1.22915 0.94961 0.91637 1.58757 0.90853 1.85387 1.05023 0.96373 1.96713 1.23530 1.06529 0.95395 1.04954 1.20307 0.86506 0.86301 0.75117 1.90699 1.15405 1.85648 1.47605 1.45983 1.09999 1.05383 1.77877 1.21312 0.95205 0.80717 1.02264 1.22116 0.96966 0.93760 0.99366 0.89236 1.22433 1.01207 0.96589 0.95898 1.23227 1.02013 0.91790 0.92507 1.65304 1.38912 1.02103 1.15326 1.22160 0.95096 0.93630 1.00107 1.20526 0.89094 0.81465 0.78814 1.43869 1.17764 1.21628 1.59247 1.90759 1.21673 1.69430 1.57875 1.23165 0.94543 0.92488 0.98628 0.92251 0.89194 0.89224 0.76731 0.91724 0.91475 0.90554 0.90511 0.94081 0.88781 0.87574 0.91416 0.77151 0.76715 0.89398 0.92964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.24 13.22 55.49 0.73 -25.51 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 21.49 29.55 -169.99 -5.02 16.47 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.53 -15.28 9.50 30.94 0.29 -14.99 16 8 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 9 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 10 C -0.15 -3.10 6.16 36.00 0.22 -2.87 16 11 C 0.53 9.87 7.85 -10.99 -0.09 9.79 16 12 O -0.52 -11.78 15.86 5.55 0.09 -11.69 16 13 N -0.74 -9.66 5.32 -60.29 -0.32 -9.98 16 14 C 0.13 1.44 4.76 -4.04 -0.02 1.43 16 15 C -0.10 -0.87 3.12 -89.24 -0.28 -1.15 16 16 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 17 C -0.12 -1.08 6.33 -25.35 -0.16 -1.24 16 18 C 0.03 0.30 5.79 -2.18 -0.01 0.28 16 19 N -0.49 -4.29 5.07 -231.14 -1.17 -5.46 16 20 C 0.02 0.14 5.31 -4.98 -0.03 0.11 16 21 C 0.52 4.03 7.90 -10.99 -0.09 3.94 16 22 N -0.86 -3.19 8.87 31.22 0.28 -2.91 16 23 O -0.52 -6.54 15.68 5.55 0.09 -6.46 16 24 C 0.04 0.30 6.05 -2.01 -0.01 0.29 16 25 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 26 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 27 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 28 H 0.40 4.15 8.32 -40.82 -0.34 3.81 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.71 7.64 -51.93 -0.40 0.31 16 33 H 0.04 0.36 7.82 -51.93 -0.41 -0.05 16 34 H 0.09 1.03 6.91 -51.93 -0.36 0.67 16 35 H 0.11 0.44 8.13 -51.93 -0.42 0.02 16 36 H 0.07 0.32 7.88 -51.93 -0.41 -0.09 16 37 H 0.40 0.23 8.83 -40.82 -0.36 -0.13 16 38 H 0.40 1.28 8.93 -40.82 -0.36 0.92 16 39 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.05 0.36 7.73 -51.93 -0.40 -0.04 16 LS Contribution 349.03 15.07 5.26 5.26 Total: -1.00 -37.80 349.03 -8.51 -46.31 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -5.96 Total: 0.29 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: -0.26 Total: -2.44 kcal Atomic # 7 Polarization: -43.38 SS G_CDS: -0.48 Total: -43.86 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: 0.18 Total: -18.14 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -37.80 -8.51 -46.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691118531.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.281 kcal (2) G-P(sol) polarization free energy of solvation -37.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds