Wall clock time and date at job start Tue Mar 31 2020 03:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35953 * 116.99914 * 2 1 4 4 C 1.38575 * 120.07937 * 0.02562 * 3 2 1 5 5 C 1.38245 * 120.02489 * 179.97438 * 4 3 2 6 6 C 1.50700 * 119.90135 * 180.02562 * 5 4 3 7 7 O 1.42898 * 109.47291 * 89.99775 * 6 5 4 8 8 C 1.38314 * 120.19261 * 359.97438 * 5 4 3 9 9 C 1.38232 * 120.16023 * 0.02562 * 8 5 4 10 10 Br 1.89099 * 120.01369 * 179.97438 * 9 8 5 11 11 C 1.38837 * 119.96827 * 359.97438 * 9 8 5 12 12 O 1.35818 * 120.09207 * 179.97438 * 11 9 8 13 13 C 1.34802 * 117.00027 * 90.00097 * 12 11 9 14 14 H 1.08001 * 120.00259 * 359.97438 * 13 12 11 15 15 C 1.38640 * 120.00102 * 179.97438 * 13 12 11 16 16 N 1.31572 * 120.00020 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 120.00000 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47180 * 59.99759 * 17 15 13 19 19 H 1.48499 * 109.47070 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.46899 * 299.99892 * 17 15 13 21 21 H 1.09003 * 109.46943 * 59.99531 * 1 2 3 22 22 H 1.08997 * 109.47695 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47167 * 300.00392 * 1 2 3 24 24 H 1.07990 * 119.98958 * 0.24618 * 4 3 2 25 25 H 1.08996 * 109.47384 * 210.00227 * 6 5 4 26 26 H 1.09006 * 109.47386 * 329.99968 * 6 5 4 27 27 H 0.96699 * 114.00407 * 179.97438 * 7 6 5 28 28 H 1.07996 * 119.91742 * 180.02562 * 8 5 4 29 29 H 0.96999 * 119.99916 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2930 2.3746 0.0005 5 6 1.9218 3.6058 0.0011 6 6 1.1001 4.8690 0.0022 7 8 0.8408 5.2674 1.3498 8 6 3.3029 3.6815 0.0016 9 6 4.0618 2.5261 0.0011 10 35 5.9497 2.6345 0.0011 11 6 3.4373 1.2862 0.0005 12 8 4.1805 0.1494 -0.0005 13 6 4.5159 -0.3637 1.2001 14 1 4.1947 0.1283 2.1064 15 6 5.2730 -1.5228 1.2716 16 7 5.6639 -2.1225 0.1676 17 14 5.7384 -2.2333 2.9354 18 1 4.5058 -2.5625 3.6954 19 1 6.5438 -3.4655 2.7397 20 1 6.5361 -1.2364 3.6938 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 0.2146 2.3193 0.0050 25 1 1.6477 5.6592 -0.5113 26 1 0.1556 4.6886 -0.5113 27 1 0.3155 6.0756 1.4270 28 1 3.7895 4.6456 0.0024 29 1 6.1933 -2.9337 0.2177 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000015356883.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:34 Heat of formation + Delta-G solvation = -102.789164 kcal Electronic energy + Delta-G solvation = -17006.106471 eV Core-core repulsion = 13941.333189 eV Total energy + Delta-G solvation = -3064.773282 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 301.999 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.40696 -38.98197 -38.61815 -36.96503 -34.05764 -32.95922 -31.36710 -30.02958 -28.35982 -27.35317 -25.85276 -23.13890 -22.34315 -20.03504 -18.81037 -18.31541 -18.02808 -17.72887 -16.63066 -16.29678 -15.71576 -15.44833 -15.31847 -15.02553 -14.76463 -13.89575 -13.80152 -13.35119 -13.31267 -12.75294 -12.69541 -12.35997 -12.26205 -12.18527 -11.91288 -11.62732 -11.38826 -11.01767 -10.89819 -10.29090 -9.56968 -9.07621 -8.15869 -5.89107 -0.00224 0.26352 0.74268 1.37418 1.45088 1.51326 2.25312 2.44494 2.50868 3.17069 3.48331 3.61888 3.99043 4.07970 4.12546 4.24684 4.31797 4.38588 4.53504 4.60253 4.68695 4.82618 5.01496 5.17642 5.19656 5.36882 5.57764 6.19265 6.48021 7.00639 7.25258 8.05551 9.06483 Molecular weight = 302.00amu Principal moments of inertia in cm(-1) A = 0.014630 B = 0.007691 C = 0.005706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.470208 B = 3639.692138 C = 4906.084085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.330 6.330 3 C 0.086 3.914 4 C -0.160 4.160 5 C -0.076 4.076 6 C 0.129 3.871 7 O -0.589 6.589 8 C -0.100 4.100 9 C -0.102 4.102 10 Br -0.042 7.042 11 C 0.082 3.918 12 O -0.251 6.251 13 C -0.355 4.355 14 H 0.058 0.942 15 C -0.024 4.024 16 N -0.930 5.930 17 Si 0.995 3.005 18 H -0.266 1.266 19 H -0.274 1.274 20 H -0.265 1.265 21 H 0.074 0.926 22 H 0.111 0.889 23 H 0.067 0.933 24 H 0.166 0.834 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.402 0.598 28 H 0.155 0.845 29 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.709 15.248 -0.183 18.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.244 6.244 3 C 0.039 3.961 4 C -0.179 4.179 5 C -0.077 4.077 6 C 0.052 3.948 7 O -0.399 6.399 8 C -0.120 4.120 9 C -0.183 4.183 10 Br 0.044 6.956 11 C 0.034 3.966 12 O -0.164 6.164 13 C -0.432 4.432 14 H 0.076 0.924 15 C -0.218 4.218 16 N -0.573 5.573 17 Si 0.817 3.183 18 H -0.191 1.191 19 H -0.199 1.199 20 H -0.190 1.190 21 H 0.092 0.908 22 H 0.129 0.871 23 H 0.086 0.914 24 H 0.183 0.817 25 H 0.098 0.902 26 H 0.100 0.900 27 H 0.253 0.747 28 H 0.172 0.828 29 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.419 14.320 -0.278 17.143 hybrid contribution -0.405 -0.162 0.469 0.641 sum -9.824 14.159 0.191 17.235 Atomic orbital electron populations 1.23394 0.76637 1.05367 1.02449 1.86288 1.23319 1.26364 1.88411 1.19696 0.91267 0.86042 0.99135 1.21384 1.01164 0.90210 1.05099 1.19741 0.92742 0.95245 0.99999 1.20951 0.98144 0.91673 0.84056 1.86546 1.77400 1.49362 1.26572 1.21022 0.93452 0.96509 1.00998 1.22357 0.91350 0.95145 1.09423 1.96562 1.03103 1.98363 1.97582 1.18761 0.88765 0.88204 1.00839 1.83924 1.67597 1.35490 1.29353 1.20924 1.32494 1.08086 0.81649 0.92376 1.25997 0.97363 0.96302 1.02187 1.70177 1.38637 1.19761 1.28722 0.84988 0.78669 0.77948 0.76714 1.19051 1.19864 1.18961 0.90775 0.87110 0.91434 0.81710 0.90234 0.89954 0.74744 0.82773 0.92940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.81 113.37 1.11 1.53 15 2 O -0.33 -14.31 10.28 -79.21 -0.81 -15.12 15 3 C 0.09 3.67 6.70 22.61 0.15 3.82 15 4 C -0.16 -5.05 8.69 22.35 0.19 -4.86 15 5 C -0.08 -2.20 5.51 -19.84 -0.11 -2.31 15 6 C 0.13 2.31 7.17 71.24 0.51 2.82 15 7 O -0.59 -11.31 13.64 -148.98 -2.03 -13.34 15 8 C -0.10 -3.33 9.43 22.29 0.21 -3.12 15 9 C -0.10 -4.43 6.24 22.41 0.14 -4.29 15 10 Br -0.04 -1.78 33.12 -20.37 -0.67 -2.45 15 11 C 0.08 4.12 5.60 22.67 0.13 4.25 15 12 O -0.25 -15.35 8.81 -9.40 -0.08 -15.43 15 13 C -0.35 -21.73 9.77 67.92 0.66 -21.07 15 14 H 0.06 3.50 7.76 -2.91 -0.02 3.47 15 15 C -0.02 -1.47 5.49 84.83 0.47 -1.00 15 16 N -0.93 -60.17 13.67 21.61 0.30 -59.88 15 17 Si 0.99 46.85 29.55 68.60 2.03 48.88 15 18 H -0.27 -11.89 7.11 99.48 0.71 -11.19 15 19 H -0.27 -12.38 7.11 99.48 0.71 -11.67 15 20 H -0.26 -11.89 7.11 99.48 0.71 -11.18 15 21 H 0.07 1.58 7.67 -2.39 -0.02 1.56 15 22 H 0.11 2.59 8.14 -2.39 -0.02 2.57 15 23 H 0.07 1.55 7.66 -2.39 -0.02 1.53 15 24 H 0.17 3.85 6.30 -2.92 -0.02 3.83 15 25 H 0.08 1.08 8.08 -2.39 -0.02 1.06 15 26 H 0.08 1.04 8.08 -2.38 -0.02 1.02 15 27 H 0.40 3.04 9.12 -74.06 -0.68 2.37 15 28 H 0.15 4.21 8.06 -2.91 -0.02 4.18 15 29 H 0.26 15.80 8.31 -92.71 -0.77 15.03 15 Total: -1.00 -81.67 283.98 2.70 -78.97 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: 0.52 Total: 2.59 kcal Atomic # 6 Polarization: -27.68 SS G_CDS: 3.47 Total: -24.21 kcal Atomic # 7 Polarization: -60.17 SS G_CDS: 0.30 Total: -59.88 kcal Atomic # 8 Polarization: -40.96 SS G_CDS: -2.93 Total: -43.89 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.88 kcal Atomic # 35 Polarization: -1.78 SS G_CDS: -0.67 Total: -2.45 kcal Total: -81.67 2.70 -78.97 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015356883.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.816 kcal (2) G-P(sol) polarization free energy of solvation -81.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds