Wall clock time and date at job start Tue Mar 31 2020 03:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00187 * 2 1 4 4 H 1.48505 * 109.46672 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46691 * 299.99226 * 3 2 1 6 6 H 1.48497 * 109.47025 * 59.99608 * 3 2 1 7 7 C 1.37887 * 119.99685 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99631 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00079 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47127 * 179.97438 * 10 9 7 12 12 O 1.42895 * 109.47036 * 179.97438 * 11 10 9 13 13 C 1.35970 * 116.99801 * 179.97438 * 12 11 10 14 14 C 1.38655 * 120.05391 * 359.73154 * 13 12 11 15 15 C 1.38185 * 119.97775 * 179.69822 * 14 13 12 16 16 C 1.38342 * 120.08398 * 0.57546 * 15 14 13 17 17 Br 1.89102 * 119.94349 * 179.74643 * 16 15 14 18 18 C 1.38326 * 120.10595 * 359.71950 * 16 15 14 19 19 C 1.38327 * 120.02261 * 359.97438 * 18 16 15 20 20 F 1.35104 * 120.04232 * 180.02562 * 19 18 16 21 21 H 0.96999 * 119.99910 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47324 * 59.99304 * 9 7 2 23 23 H 1.09004 * 109.47043 * 299.99672 * 9 7 2 24 24 H 1.09001 * 109.46832 * 59.99966 * 10 9 7 25 25 H 1.08993 * 109.47194 * 299.99487 * 10 9 7 26 26 H 1.09001 * 109.46801 * 300.00272 * 11 10 9 27 27 H 1.09001 * 109.46998 * 59.99868 * 11 10 9 28 28 H 1.07996 * 120.00665 * 359.97438 * 14 13 12 29 29 H 1.07996 * 119.95857 * 180.29532 * 15 14 13 30 30 H 1.08005 * 119.99263 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3962 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9872 0.0012 12 8 2.4087 -6.0733 0.0006 13 6 1.8889 -7.3298 0.0016 14 6 0.5145 -7.5127 0.0087 15 6 -0.0121 -8.7902 0.0034 16 6 0.8304 -9.8875 0.0030 17 35 0.1055 -11.6341 0.0030 18 6 2.2021 -9.7091 0.0021 19 6 2.7340 -8.4322 0.0010 20 9 4.0737 -8.2575 -0.0005 21 1 -0.4850 0.8400 -0.0004 22 1 0.6246 -2.5571 -0.8896 23 1 0.6240 -2.5567 0.8904 24 1 2.8718 -3.6044 0.8905 25 1 2.8717 -3.6045 -0.8894 26 1 0.8537 -5.0446 0.8914 27 1 0.8531 -5.0451 -0.8886 28 1 -0.1442 -6.6569 0.0139 29 1 -1.0827 -8.9323 0.0042 30 1 2.8581 -10.5671 0.0013 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042220326.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:04 Heat of formation + Delta-G solvation = -89.015111 kcal Electronic energy + Delta-G solvation = -15895.488719 eV Core-core repulsion = 12843.685515 eV Total energy + Delta-G solvation = -3051.803204 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 302.006 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.95114 -41.18174 -38.81074 -36.02046 -33.81855 -32.78316 -31.92663 -29.95400 -28.62221 -25.62728 -23.95563 -23.19364 -21.98637 -19.53607 -18.60575 -18.01367 -17.82201 -17.52388 -16.52748 -16.51778 -16.11325 -15.50548 -15.18017 -14.93628 -14.38491 -14.12003 -13.85350 -13.73678 -13.03096 -12.99200 -12.71084 -12.52847 -12.41738 -12.09931 -11.68800 -11.56295 -11.35199 -11.28298 -11.24191 -10.57578 -10.15270 -9.27706 -8.23093 -6.33257 -0.13688 -0.09201 0.48747 1.40159 1.41114 1.53932 1.95042 2.26267 2.41195 3.05778 3.11159 3.53247 3.74793 3.92845 4.01451 4.08884 4.27191 4.38159 4.44263 4.78986 4.79782 4.84148 4.91697 4.96811 5.10028 5.37761 5.48158 5.65361 5.80209 6.12229 6.23875 6.82038 7.36013 8.88859 Molecular weight = 302.01amu Principal moments of inertia in cm(-1) A = 0.042899 B = 0.002566 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.531796 B =10910.102204 C =11536.883331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.963 3.037 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.546 4.546 8 H 0.058 0.942 9 C 0.030 3.970 10 C -0.099 4.099 11 C 0.066 3.934 12 O -0.324 6.324 13 C 0.101 3.899 14 C -0.179 4.179 15 C -0.048 4.048 16 C -0.113 4.113 17 Br -0.026 7.026 18 C -0.081 4.081 19 C 0.048 3.952 20 F -0.140 7.140 21 H 0.265 0.735 22 H 0.003 0.997 23 H 0.003 0.997 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.161 0.839 29 H 0.168 0.832 30 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.467 -25.816 0.013 25.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.788 3.212 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.584 4.584 8 H 0.076 0.924 9 C -0.008 4.008 10 C -0.136 4.136 11 C -0.008 4.008 12 O -0.238 6.238 13 C 0.054 3.946 14 C -0.198 4.198 15 C -0.068 4.068 16 C -0.193 4.193 17 Br 0.060 6.940 18 C -0.102 4.102 19 C 0.027 3.973 20 F -0.119 7.119 21 H 0.074 0.926 22 H 0.022 0.978 23 H 0.022 0.978 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.178 0.822 29 H 0.185 0.815 30 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -1.626 -26.279 0.013 26.329 hybrid contribution 0.569 1.575 -0.002 1.674 sum -1.057 -24.704 0.011 24.727 Atomic orbital electron populations 1.70069 1.07576 1.27846 1.51437 1.25912 0.95799 1.03161 0.94628 0.85421 0.79008 0.78896 0.77878 1.18900 1.20263 1.20272 1.21657 0.93562 0.92278 1.50872 0.92399 1.18907 0.94079 0.91853 0.95914 1.21454 0.98957 0.91408 1.01831 1.23082 0.91581 0.83660 1.02481 1.86151 1.37680 1.12233 1.87710 1.19512 0.93178 0.84664 0.97246 1.21459 0.92387 0.99941 1.06061 1.21284 1.01540 0.89511 0.94438 1.21517 0.94109 0.92804 1.10857 1.96747 1.84465 1.15030 1.97801 1.21046 0.94961 0.95304 0.98840 1.17097 0.76912 0.92279 1.10964 1.91489 1.29697 1.96168 1.94509 0.92618 0.97830 0.97820 0.92413 0.92408 0.90605 0.90626 0.82179 0.81454 0.81417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.87 13.29 21.45 0.28 -54.59 16 2 C 0.00 0.18 5.46 84.66 0.46 0.64 16 3 Si 0.96 43.64 29.54 68.60 2.03 45.66 16 4 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 5 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 6 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 7 C -0.55 -30.54 9.11 25.60 0.23 -30.30 16 8 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 9 C 0.03 1.49 4.97 29.85 0.15 1.64 16 10 C -0.10 -4.01 5.52 30.60 0.17 -3.84 16 11 C 0.07 2.14 4.74 71.98 0.34 2.49 16 12 O -0.32 -10.72 10.00 -93.22 -0.93 -11.65 16 13 C 0.10 2.80 6.69 22.53 0.15 2.95 16 14 C -0.18 -3.90 9.04 22.36 0.20 -3.70 16 15 C -0.05 -0.85 9.78 22.28 0.22 -0.63 16 16 C -0.11 -2.05 6.22 22.32 0.14 -1.91 16 17 Br -0.03 -0.39 33.70 -20.37 -0.69 -1.07 16 18 C -0.08 -1.62 9.76 22.31 0.22 -1.40 16 19 C 0.05 1.26 7.31 22.45 0.16 1.42 16 20 F -0.14 -4.12 17.11 44.97 0.77 -3.35 16 21 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 22 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 23 H 0.00 0.18 8.14 -2.38 -0.02 0.16 16 24 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 25 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 26 H 0.08 2.26 7.65 -2.39 -0.02 2.24 16 27 H 0.08 2.25 7.68 -2.39 -0.02 2.23 16 28 H 0.16 3.13 6.30 -2.91 -0.02 3.11 16 29 H 0.17 2.06 8.06 -2.91 -0.02 2.03 16 30 H 0.17 2.61 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -62.38 289.92 5.06 -57.32 By element: Atomic # 1 Polarization: -0.82 SS G_CDS: 1.15 Total: 0.33 kcal Atomic # 6 Polarization: -35.10 SS G_CDS: 2.45 Total: -32.65 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: 0.28 Total: -54.59 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: -0.93 Total: -11.65 kcal Atomic # 9 Polarization: -4.12 SS G_CDS: 0.77 Total: -3.35 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 35 Polarization: -0.39 SS G_CDS: -0.69 Total: -1.07 kcal Total: -62.38 5.06 -57.32 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042220326.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.693 kcal (2) G-P(sol) polarization free energy of solvation -62.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds