Wall clock time and date at job start Tue Mar 31 2020 03:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46906 * 110.99573 * 2 1 4 4 C 1.50701 * 109.46965 * 293.95399 * 3 2 1 5 5 O 1.21283 * 120.00405 * 0.02562 * 4 3 2 6 6 N 1.34780 * 119.99669 * 180.02562 * 4 3 2 7 7 C 1.46497 * 120.00000 * 180.02562 * 6 4 3 8 8 C 1.50696 * 109.47352 * 179.97438 * 7 6 4 9 9 H 1.07995 * 119.99841 * 359.97438 * 8 7 6 10 10 C 1.37874 * 120.00044 * 179.97438 * 8 7 6 11 11 N 1.31518 * 120.00516 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00000 * 179.97438 * 10 8 7 13 13 H 1.48510 * 109.47043 * 60.00342 * 12 10 8 14 14 H 1.48506 * 109.47443 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47336 * 300.00078 * 12 10 8 16 16 C 1.46898 * 111.00283 * 123.95141 * 2 1 3 17 17 C 1.50702 * 109.46796 * 66.04964 * 16 2 1 18 18 C 1.33352 * 125.19184 * 90.00019 * 17 16 2 19 19 C 1.38462 * 114.93061 * 180.02562 * 18 17 16 20 20 C 1.33498 * 114.88910 * 359.97438 * 19 18 17 21 21 Cl 1.73599 * 125.21456 * 180.02562 * 20 19 18 22 22 S 1.75882 * 125.18952 * 269.69459 * 17 16 2 23 23 H 1.09004 * 109.47457 * 60.00221 * 1 2 3 24 24 H 1.09001 * 109.46615 * 179.97438 * 1 2 3 25 25 H 1.08990 * 109.47358 * 299.99539 * 1 2 3 26 26 H 1.08993 * 109.47164 * 53.95342 * 3 2 1 27 27 H 1.08996 * 109.46920 * 173.95376 * 3 2 1 28 28 H 0.97001 * 120.00106 * 359.97438 * 6 4 3 29 29 H 1.09008 * 109.47033 * 300.00175 * 7 6 4 30 30 H 1.09005 * 109.47366 * 59.99240 * 7 6 4 31 31 H 0.97001 * 120.00440 * 180.02562 * 11 10 8 32 32 H 1.08999 * 109.46988 * 186.04548 * 16 2 1 33 33 H 1.08996 * 109.46945 * 306.05035 * 16 2 1 34 34 H 1.07994 * 122.53054 * 359.97438 * 18 17 16 35 35 H 1.08004 * 122.55658 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 -1.2985 5 8 1.0046 1.4457 -2.1408 6 7 2.0187 3.3199 -1.5237 7 6 1.6696 3.9770 -2.7857 8 6 2.2097 5.3839 -2.7858 9 1 2.7577 5.7519 -1.9311 10 6 2.0042 6.2011 -3.8770 11 7 1.3364 5.7532 -4.9177 12 14 2.6730 7.9453 -3.8767 13 1 4.1502 7.9090 -3.7290 14 1 2.3203 8.6109 -5.1566 15 1 2.0807 8.7025 -2.7449 16 6 1.9955 -0.7659 1.1376 17 6 1.6371 -2.2204 0.9728 18 6 2.3841 -3.1297 0.3456 19 6 1.8493 -4.4066 0.3191 20 6 0.6671 -4.5333 0.9261 21 17 -0.2403 -6.0079 1.0527 22 16 0.1732 -2.9792 1.5850 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8899 26 1 1.5610 1.9274 0.8308 27 1 3.0796 1.3445 0.1082 28 1 2.5240 3.8012 -0.8499 29 1 2.1033 3.4209 -3.6170 30 1 0.5853 4.0044 -2.8934 31 1 1.1921 6.3281 -5.6855 32 1 3.0798 -0.6610 1.1755 33 1 1.5611 -0.3872 2.0627 34 1 3.3339 -2.8882 -0.1081 35 1 2.3504 -5.2368 -0.1565 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048250943.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:11 Heat of formation + Delta-G solvation = -24.096066 kcal Electronic energy + Delta-G solvation = -19106.773233 eV Core-core repulsion = 15870.718743 eV Total energy + Delta-G solvation = -3236.054490 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 302.060 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.69908 -39.23744 -37.99197 -37.23617 -36.01724 -34.31953 -31.82665 -30.09358 -28.40997 -27.56695 -25.27588 -24.25778 -22.83986 -21.28065 -20.32749 -19.04096 -18.41210 -17.47457 -17.20456 -16.86188 -16.71193 -16.23292 -15.83430 -15.69861 -15.05346 -14.55660 -14.51032 -14.13397 -14.10280 -13.88689 -13.76523 -13.45073 -12.92912 -12.80377 -12.71999 -12.70592 -12.55830 -12.34620 -12.21475 -11.93413 -11.69523 -11.49030 -10.77143 -10.64851 -9.77856 -9.63394 -9.47852 -9.25772 -8.27423 -6.44099 -0.22416 0.10589 0.81870 1.22899 1.44160 1.48206 1.56308 1.63143 1.85165 2.31363 2.51941 3.07327 3.14814 3.70769 3.97394 4.18504 4.27506 4.35375 4.40095 4.44866 4.55890 4.62642 4.71219 4.97147 5.10148 5.14213 5.18257 5.27210 5.39451 5.51907 5.72774 5.86670 5.89587 6.02055 6.67672 6.99876 7.25843 7.59036 8.84489 Molecular weight = 302.06amu Principal moments of inertia in cm(-1) A = 0.046775 B = 0.002286 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.468207 B =12244.050024 C =12396.145410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.538 5.538 3 C 0.050 3.950 4 C 0.493 3.507 5 O -0.586 6.586 6 N -0.710 5.710 7 C 0.269 3.731 8 C -0.555 4.555 9 H 0.085 0.915 10 C 0.002 3.998 11 N -0.932 5.932 12 Si 0.985 3.015 13 H -0.261 1.261 14 H -0.287 1.287 15 H -0.262 1.262 16 C 0.125 3.875 17 C -0.166 4.166 18 C -0.118 4.118 19 C -0.117 4.117 20 C -0.166 4.166 21 Cl -0.017 7.017 22 S 0.138 5.862 23 H 0.056 0.944 24 H 0.071 0.929 25 H 0.037 0.963 26 H 0.091 0.909 27 H 0.136 0.864 28 H 0.409 0.591 29 H -0.015 1.015 30 H -0.016 1.016 31 H 0.268 0.732 32 H 0.123 0.877 33 H 0.064 0.936 34 H 0.164 0.836 35 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.894 -17.987 18.791 26.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.263 5.263 3 C -0.080 4.080 4 C 0.280 3.720 5 O -0.467 6.467 6 N -0.361 5.361 7 C 0.146 3.854 8 C -0.593 4.593 9 H 0.103 0.897 10 C -0.198 4.198 11 N -0.571 5.571 12 Si 0.808 3.192 13 H -0.186 1.186 14 H -0.213 1.213 15 H -0.186 1.186 16 C -0.003 4.003 17 C -0.284 4.284 18 C -0.149 4.149 19 C -0.149 4.149 20 C -0.310 4.310 21 Cl 0.011 6.989 22 S 0.401 5.599 23 H 0.075 0.925 24 H 0.089 0.911 25 H 0.056 0.944 26 H 0.109 0.891 27 H 0.154 0.846 28 H 0.244 0.756 29 H 0.003 0.997 30 H 0.002 0.998 31 H 0.077 0.923 32 H 0.141 0.859 33 H 0.083 0.917 34 H 0.181 0.819 35 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 1.187 -18.228 18.425 25.945 hybrid contribution 0.809 0.553 -0.596 1.147 sum 1.996 -17.675 17.829 25.185 Atomic orbital electron populations 1.22550 0.87232 1.02324 1.00945 1.61533 1.08655 1.12609 1.43484 1.21983 1.03896 0.88863 0.93280 1.21393 0.79057 0.81572 0.89989 1.90627 1.41948 1.65236 1.48851 1.46171 1.56320 1.13261 1.20353 1.18472 0.93559 0.91865 0.81507 1.21608 1.36716 0.97223 1.03742 0.89658 1.26085 0.95001 1.04118 0.94564 1.70139 1.41098 1.38916 1.06937 0.85213 0.79141 0.77300 0.77589 1.18563 1.21303 1.18613 1.20726 1.02455 0.85687 0.91479 1.24576 0.97876 1.00063 1.05932 1.20216 1.02851 0.91150 1.00635 1.20457 0.94175 0.99557 1.00748 1.25390 0.99945 0.93408 1.12224 1.98361 1.73049 1.30441 1.97041 1.84395 1.22155 0.97722 1.55661 0.92525 0.91074 0.94412 0.89149 0.84585 0.75555 0.99737 0.99781 0.92318 0.85937 0.91747 0.81883 0.81864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 9.00 127.69 1.15 1.64 16 2 N -0.54 -13.41 4.49 -931.66 -4.18 -17.60 16 3 C 0.05 1.20 5.45 85.56 0.47 1.66 16 4 C 0.49 18.86 7.55 87.66 0.66 19.52 16 5 O -0.59 -28.63 14.31 -3.04 -0.04 -28.68 16 6 N -0.71 -28.86 5.55 -466.78 -2.59 -31.45 16 7 C 0.27 14.65 5.43 85.63 0.46 15.11 16 8 C -0.56 -29.82 9.28 25.60 0.24 -29.58 16 9 H 0.09 4.08 7.60 -2.91 -0.02 4.06 16 10 C 0.00 0.10 5.46 84.65 0.46 0.56 16 11 N -0.93 -56.34 13.29 21.45 0.28 -56.05 16 12 Si 0.98 41.89 29.54 68.60 2.03 43.92 16 13 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 14 H -0.29 -12.23 7.11 99.48 0.71 -11.52 16 15 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 16 C 0.12 2.08 5.46 85.56 0.47 2.55 16 17 C -0.17 -3.08 5.24 24.58 0.13 -2.95 16 18 C -0.12 -2.08 10.05 21.22 0.21 -1.87 16 19 C -0.12 -2.05 10.13 21.25 0.22 -1.83 16 20 C -0.17 -3.17 7.10 66.75 0.47 -2.69 16 21 Cl -0.02 -0.31 29.29 -2.72 -0.08 -0.39 16 22 S 0.14 2.57 21.82 -56.49 -1.23 1.34 16 23 H 0.06 2.04 5.88 -2.38 -0.01 2.02 16 24 H 0.07 1.85 5.85 -2.39 -0.01 1.83 16 25 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.09 1.68 8.12 -2.39 -0.02 1.66 16 27 H 0.14 2.34 7.93 -2.39 -0.02 2.32 16 28 H 0.41 13.26 8.32 -92.71 -0.77 12.49 16 29 H -0.02 -0.95 8.14 -2.38 -0.02 -0.97 16 30 H -0.02 -0.97 8.14 -2.38 -0.02 -0.99 16 31 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 32 H 0.12 1.46 7.93 -2.39 -0.02 1.45 16 33 H 0.06 0.88 8.12 -2.39 -0.02 0.86 16 34 H 0.16 2.38 8.06 -2.91 -0.02 2.36 16 35 H 0.16 2.23 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -72.77 328.34 -0.53 -73.30 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: 0.35 Total: 13.48 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: 4.94 Total: 2.12 kcal Atomic # 7 Polarization: -98.61 SS G_CDS: -6.49 Total: -105.10 kcal Atomic # 8 Polarization: -28.63 SS G_CDS: -0.04 Total: -28.68 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal Atomic # 16 Polarization: 2.57 SS G_CDS: -1.23 Total: 1.34 kcal Atomic # 17 Polarization: -0.31 SS G_CDS: -0.08 Total: -0.39 kcal Total: -72.77 -0.53 -73.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048250943.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.205 kcal (2) G-P(sol) polarization free energy of solvation -72.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds