Wall clock time and date at job start Tue Mar 31 2020 03:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38262 * 119.99558 * 2 1 4 4 C 1.38220 * 119.99734 * 179.97438 * 3 2 1 5 5 C 1.38253 * 120.00022 * 359.80850 * 4 3 2 6 6 C 1.38211 * 120.00053 * 0.42200 * 5 4 3 7 7 C 1.50705 * 120.00497 * 179.80756 * 6 5 4 8 8 C 1.50697 * 110.01493 * 115.27147 * 7 6 5 9 9 O 1.21285 * 120.00031 * 122.70314 * 8 7 6 10 10 N 1.34781 * 120.00234 * 302.97118 * 8 7 6 11 11 C 1.46500 * 119.99603 * 4.49688 * 10 8 7 12 12 C 1.46492 * 119.99938 * 184.49660 * 10 8 7 13 13 C 1.50708 * 109.47233 * 90.00045 * 12 10 8 14 14 H 1.08000 * 119.99543 * 0.02562 * 13 12 10 15 15 C 1.37871 * 119.99881 * 179.97438 * 13 12 10 16 16 N 1.31516 * 120.00349 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 120.00029 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46938 * 89.99703 * 17 15 13 19 19 H 1.48500 * 109.47334 * 210.00197 * 17 15 13 20 20 H 1.48501 * 109.46854 * 330.00152 * 17 15 13 21 21 C 1.53872 * 110.03551 * 236.66892 * 7 6 5 22 22 C 1.54371 * 106.54932 * 119.34257 * 21 7 6 23 23 C 1.54894 * 104.21244 * 23.57592 * 22 21 7 24 24 C 1.54271 * 110.02569 * 353.88343 * 7 6 5 25 25 C 1.38208 * 120.00572 * 179.97438 * 2 1 3 26 26 H 1.09007 * 109.47363 * 270.02226 * 1 2 3 27 27 H 1.08994 * 109.47579 * 30.02073 * 1 2 3 28 28 H 1.09003 * 109.46726 * 150.02424 * 1 2 3 29 29 H 1.07992 * 120.00397 * 359.97438 * 3 2 1 30 30 H 1.08004 * 119.99646 * 180.02562 * 4 3 2 31 31 H 1.08004 * 120.00029 * 180.23125 * 5 4 3 32 32 H 1.09001 * 109.46859 * 84.88785 * 11 10 8 33 33 H 1.09002 * 109.46456 * 204.88527 * 11 10 8 34 34 H 1.09002 * 109.47304 * 324.88443 * 11 10 8 35 35 H 1.08996 * 109.47015 * 210.00139 * 12 10 8 36 36 H 1.08998 * 109.47331 * 330.00172 * 12 10 8 37 37 H 0.96998 * 120.00212 * 179.97438 * 16 15 13 38 38 H 1.09002 * 110.02904 * 238.62151 * 21 7 6 39 39 H 1.08999 * 110.03121 * 0.03926 * 21 7 6 40 40 H 1.08996 * 110.46024 * 264.89404 * 22 21 7 41 41 H 1.08992 * 110.60380 * 142.31972 * 22 21 7 42 42 H 1.09000 * 110.74947 * 203.76240 * 23 22 21 43 43 H 1.08994 * 110.91680 * 80.46292 * 23 22 21 44 44 H 1.09003 * 110.48726 * 335.73065 * 24 7 6 45 45 H 1.08997 * 110.48412 * 98.24804 * 24 7 6 46 46 H 1.08003 * 119.99720 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1975 0.0005 5 6 4.2717 0.0002 0.0051 6 6 3.5807 -1.1968 0.0003 7 6 4.3342 -2.5019 0.0008 8 6 4.0636 -3.2532 1.2789 9 8 3.6031 -4.3744 1.2374 10 7 4.3283 -2.6770 2.4682 11 6 4.7857 -1.2863 2.5227 12 6 4.1587 -3.4414 3.7063 13 6 5.4488 -4.1436 4.0440 14 1 6.3091 -4.0311 3.4008 15 6 5.5310 -4.9285 5.1745 16 7 4.4835 -5.0649 5.9580 17 14 7.1303 -5.7982 5.5934 18 1 7.9648 -4.9153 6.4475 19 1 6.8329 -7.0565 6.3239 20 1 7.8645 -6.1141 4.3419 21 6 3.9145 -3.3535 -1.2102 22 6 5.1887 -3.5788 -2.0520 23 6 6.3488 -3.3997 -1.0414 24 6 5.8470 -2.2386 -0.1473 25 6 2.1981 -1.1968 0.0005 26 1 -0.3634 0.0004 1.0277 27 1 -0.3634 0.8897 -0.5141 28 1 -0.3633 -0.8902 -0.5135 29 1 1.6582 2.1327 -0.0004 30 1 4.1203 2.1329 0.0010 31 1 5.3517 0.0002 0.0093 32 1 3.9236 -0.6195 2.5075 33 1 5.3529 -1.1261 3.4397 34 1 5.4209 -1.0787 1.6616 35 1 3.8904 -2.7645 4.5174 36 1 3.3678 -4.1794 3.5723 37 1 4.5413 -5.6174 6.7531 38 1 3.5150 -4.3101 -0.8734 39 1 3.1664 -2.8224 -1.7987 40 1 5.2567 -2.8358 -2.8466 41 1 5.1991 -4.5853 -2.4702 42 1 7.2690 -3.1216 -1.5552 43 1 6.4953 -4.3051 -0.4527 44 1 6.0214 -1.2792 -0.6344 45 1 6.3360 -2.2656 0.8264 46 1 1.6581 -2.1322 0.0005 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069771452.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:35 Heat of formation + Delta-G solvation = -32.575149 kcal Electronic energy + Delta-G solvation = -25841.537754 eV Core-core repulsion = 22501.887662 eV Total energy + Delta-G solvation = -3339.650093 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 301.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.14697 -39.79023 -38.05200 -36.72738 -34.81985 -33.76133 -32.61010 -30.42598 -29.53475 -28.80436 -27.87484 -27.08735 -25.16499 -23.42057 -22.96227 -21.60085 -21.21037 -19.42159 -18.71852 -18.05557 -17.38843 -17.28853 -16.55828 -16.42397 -15.95652 -15.83967 -15.48066 -14.97732 -14.67351 -14.45238 -14.38805 -14.18448 -13.83401 -13.74931 -13.55208 -13.36567 -13.08408 -12.97449 -12.89926 -12.68936 -12.55113 -12.34511 -12.24768 -12.14111 -11.98894 -11.88362 -11.68714 -11.65899 -11.58171 -11.37868 -10.67272 -10.63874 -9.63811 -9.44981 -9.35673 -8.24984 -6.40854 0.43853 0.51850 1.34232 1.37722 1.48060 1.78612 2.27764 2.42484 2.83786 3.04222 3.48957 3.54757 3.62795 3.87920 4.01124 4.10356 4.22904 4.26882 4.36235 4.46503 4.47865 4.52138 4.59454 4.61018 4.68030 4.75893 4.79292 4.84659 4.87742 4.89866 4.93763 4.98665 5.04472 5.12318 5.13494 5.19656 5.22401 5.27682 5.33764 5.46234 5.53482 5.62570 5.68978 5.74866 5.82354 6.02094 6.16166 6.66035 6.75222 7.24498 7.43727 8.82474 Molecular weight = 301.18amu Principal moments of inertia in cm(-1) A = 0.015571 B = 0.005017 C = 0.004416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.833597 B = 5580.036958 C = 6339.324715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.093 4.093 3 C -0.125 4.125 4 C -0.107 4.107 5 C -0.126 4.126 6 C -0.067 4.067 7 C -0.034 4.034 8 C 0.514 3.486 9 O -0.597 6.597 10 N -0.601 5.601 11 C 0.075 3.925 12 C 0.260 3.740 13 C -0.542 4.542 14 H 0.055 0.945 15 C 0.007 3.993 16 N -0.930 5.930 17 Si 0.970 3.030 18 H -0.261 1.261 19 H -0.281 1.281 20 H -0.271 1.271 21 C -0.113 4.113 22 C -0.111 4.111 23 C -0.125 4.125 24 C -0.121 4.121 25 C -0.136 4.136 26 H 0.067 0.933 27 H 0.088 0.912 28 H 0.060 0.940 29 H 0.146 0.854 30 H 0.155 0.845 31 H 0.151 0.849 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.100 0.900 35 H 0.018 0.982 36 H -0.006 1.006 37 H 0.268 0.732 38 H 0.053 0.947 39 H 0.078 0.922 40 H 0.093 0.907 41 H 0.067 0.933 42 H 0.100 0.900 43 H 0.036 0.964 44 H 0.121 0.879 45 H 0.064 0.936 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.482 16.293 -16.588 23.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.093 4.093 3 C -0.143 4.143 4 C -0.125 4.125 5 C -0.144 4.144 6 C -0.068 4.068 7 C -0.037 4.037 8 C 0.303 3.697 9 O -0.479 6.479 10 N -0.330 5.330 11 C -0.067 4.067 12 C 0.138 3.862 13 C -0.580 4.580 14 H 0.073 0.927 15 C -0.192 4.192 16 N -0.569 5.569 17 Si 0.794 3.206 18 H -0.186 1.186 19 H -0.206 1.206 20 H -0.196 1.196 21 C -0.151 4.151 22 C -0.148 4.148 23 C -0.163 4.163 24 C -0.158 4.158 25 C -0.154 4.154 26 H 0.086 0.914 27 H 0.107 0.893 28 H 0.079 0.921 29 H 0.163 0.837 30 H 0.173 0.827 31 H 0.168 0.832 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.118 0.882 35 H 0.036 0.964 36 H 0.012 0.988 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.096 0.904 40 H 0.112 0.888 41 H 0.085 0.915 42 H 0.118 0.882 43 H 0.055 0.945 44 H 0.139 0.861 45 H 0.083 0.917 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.166 15.653 -16.403 22.674 hybrid contribution 0.088 -1.343 1.047 1.705 sum 0.254 14.311 -15.356 20.992 Atomic orbital electron populations 1.20827 0.90242 1.03483 1.02539 1.20117 0.97056 0.92857 0.99229 1.21354 0.94905 0.97546 1.00516 1.21462 0.94194 0.98504 0.98321 1.21419 1.01210 0.91103 1.00641 1.19477 0.93237 0.93429 1.00637 1.20298 0.98105 0.93318 0.91965 1.20956 0.76864 0.85950 0.85898 1.90578 1.47545 1.22295 1.87438 1.48001 1.64725 1.13915 1.06396 1.22286 0.99859 0.80467 1.04066 1.18755 0.95935 0.90445 0.81018 1.21659 0.97767 1.29937 1.08638 0.92706 1.25903 1.00581 0.96869 0.95819 1.70067 1.31441 1.40299 1.15128 0.85378 0.78811 0.78071 0.78346 1.18558 1.20591 1.19599 1.22274 0.99472 0.99226 0.94089 1.22326 0.92558 1.02420 0.97526 1.22509 0.99412 0.97249 0.97106 1.22842 0.90455 1.01543 1.00962 1.20880 0.94116 0.97723 1.02680 0.91392 0.89317 0.92075 0.83663 0.82688 0.83170 0.92630 0.91569 0.88194 0.96356 0.98801 0.92357 0.92813 0.90372 0.88806 0.91473 0.88157 0.94464 0.86063 0.91743 0.88976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.18 10.01 71.23 0.71 -1.47 16 2 C -0.09 -2.16 5.88 -19.87 -0.12 -2.28 16 3 C -0.13 -2.32 9.70 22.27 0.22 -2.10 16 4 C -0.11 -1.82 10.05 22.27 0.22 -1.59 16 5 C -0.13 -2.58 6.65 22.27 0.15 -2.43 16 6 C -0.07 -1.85 3.07 -19.86 -0.06 -1.91 16 7 C -0.03 -1.08 0.44 -52.95 -0.02 -1.11 16 8 C 0.51 23.39 6.17 87.66 0.54 23.93 16 9 O -0.60 -33.32 14.76 -3.04 -0.04 -33.36 16 10 N -0.60 -27.73 2.80 -851.13 -2.38 -30.11 16 11 C 0.08 2.59 8.25 127.77 1.05 3.64 16 12 C 0.26 14.91 5.17 85.64 0.44 15.36 16 13 C -0.54 -32.27 9.39 25.60 0.24 -32.03 16 14 H 0.05 3.21 7.81 -2.91 -0.02 3.19 16 15 C 0.01 0.42 5.46 84.65 0.46 0.88 16 16 N -0.93 -57.81 13.29 21.45 0.28 -57.53 16 17 Si 0.97 45.69 29.54 68.60 2.03 47.72 16 18 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 19 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 20 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 21 C -0.11 -3.48 5.79 31.35 0.18 -3.30 16 22 C -0.11 -2.65 6.83 31.71 0.22 -2.43 16 23 C -0.13 -3.18 6.91 31.89 0.22 -2.96 16 24 C -0.12 -3.15 4.24 31.67 0.13 -3.01 16 25 C -0.14 -3.96 8.28 22.27 0.18 -3.77 16 26 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 27 H 0.09 1.23 8.09 -2.39 -0.02 1.21 16 28 H 0.06 1.20 8.09 -2.39 -0.02 1.18 16 29 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 30 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 31 H 0.15 2.38 5.11 -2.91 -0.01 2.36 16 32 H 0.06 1.78 7.27 -2.39 -0.02 1.76 16 33 H 0.07 2.31 8.03 -2.39 -0.02 2.29 16 34 H 0.10 2.75 2.85 -2.39 -0.01 2.75 16 35 H 0.02 1.07 8.07 -2.39 -0.02 1.06 16 36 H -0.01 -0.41 7.36 -2.39 -0.02 -0.42 16 37 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 38 H 0.05 2.08 6.39 -2.39 -0.02 2.06 16 39 H 0.08 2.15 7.21 -2.39 -0.02 2.13 16 40 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.07 1.57 8.14 -2.39 -0.02 1.56 16 42 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.12 2.18 5.52 -2.39 -0.01 2.17 16 45 H 0.06 1.91 6.16 -2.39 -0.01 1.90 16 46 H 0.09 3.11 8.01 -2.91 -0.02 3.08 16 Total: -1.00 -77.86 355.11 5.63 -72.23 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: 0.97 Total: 17.63 kcal Atomic # 6 Polarization: -21.36 SS G_CDS: 4.78 Total: -16.58 kcal Atomic # 7 Polarization: -85.54 SS G_CDS: -2.09 Total: -87.63 kcal Atomic # 8 Polarization: -33.32 SS G_CDS: -0.04 Total: -33.36 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -77.86 5.63 -72.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069771452.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.656 kcal (2) G-P(sol) polarization free energy of solvation -77.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds