Wall clock time and date at job start Tue Mar 31 2020 03:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30174 * 126.79998 * 2 1 4 4 O 1.20920 * 111.60067 * 180.25151 * 3 2 1 5 5 C 1.34034 * 111.57121 * 359.74286 * 4 3 2 6 6 C 1.50704 * 126.78187 * 179.97438 * 5 4 3 7 7 C 1.35455 * 106.44692 * 0.02562 * 5 4 3 8 8 C 1.50699 * 128.01073 * 179.97438 * 7 5 4 9 9 N 1.46901 * 109.46990 * 96.24730 * 8 7 5 10 10 C 1.46897 * 110.99858 * 160.48954 * 9 8 7 11 11 C 1.50701 * 109.47452 * 288.59985 * 10 9 8 12 12 H 1.08007 * 119.99915 * 3.32254 * 11 10 9 13 13 C 1.37871 * 120.00198 * 183.31963 * 11 10 9 14 14 N 1.31517 * 120.00165 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99924 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47466 * 60.00152 * 15 13 11 17 17 H 1.48509 * 109.46905 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47243 * 299.99671 * 15 13 11 19 19 C 1.46892 * 111.00128 * 284.44277 * 9 8 7 20 20 C 1.50705 * 109.47292 * 169.99810 * 19 9 8 21 21 C 1.38224 * 119.61412 * 94.98188 * 20 19 9 22 22 C 1.38626 * 119.16251 * 179.79454 * 21 20 19 23 23 C 1.38678 * 118.41884 * 0.47083 * 22 21 20 24 24 C 1.38186 * 119.15974 * 359.50749 * 23 22 21 25 25 N 1.31847 * 119.61952 * 275.00330 * 20 19 9 26 26 H 1.09005 * 109.47320 * 264.86025 * 1 2 3 27 27 H 1.09001 * 109.47290 * 24.85823 * 1 2 3 28 28 H 1.08999 * 109.46934 * 144.86424 * 1 2 3 29 29 H 1.09004 * 109.46945 * 270.00261 * 6 5 4 30 30 H 1.08999 * 109.46972 * 29.99912 * 6 5 4 31 31 H 1.08997 * 109.46990 * 150.00200 * 6 5 4 32 32 H 1.08996 * 109.46960 * 336.24868 * 8 7 5 33 33 H 1.08998 * 109.46807 * 216.25031 * 8 7 5 34 34 H 1.09006 * 109.47033 * 48.60099 * 10 9 8 35 35 H 1.09002 * 109.47039 * 168.59966 * 10 9 8 36 36 H 0.97001 * 120.00056 * 179.97438 * 14 13 11 37 37 H 1.09011 * 109.47089 * 50.00017 * 19 9 8 38 38 H 1.09000 * 109.47726 * 290.00527 * 19 9 8 39 39 H 1.08002 * 120.42029 * 359.97438 * 21 20 19 40 40 H 1.07997 * 120.79382 * 180.22806 * 22 21 20 41 41 H 1.07997 * 120.42420 * 179.78581 * 23 22 21 42 42 H 1.08001 * 119.61687 * 180.25619 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4537 0.7253 -0.0049 5 6 3.6025 -0.6067 -0.0034 6 6 4.9022 -1.3696 -0.0087 7 6 2.3540 -1.1321 0.0028 8 6 1.9591 -2.5864 0.0064 9 7 1.6914 -3.0177 1.3849 10 6 0.8799 -4.2420 1.4052 11 6 -0.5275 -3.9191 0.9739 12 1 -0.7795 -2.9169 0.6597 13 6 -1.4935 -4.9028 0.9805 14 7 -1.1865 -6.1233 1.3627 15 14 -3.2378 -4.5026 0.4453 16 1 -3.2265 -4.0205 -0.9592 17 1 -4.0780 -5.7232 0.5434 18 1 -3.7960 -3.4460 1.3269 19 6 2.9431 -3.2034 2.1308 20 6 2.6324 -3.4033 3.5919 21 6 2.5233 -4.6849 4.0979 22 6 2.2414 -4.8579 5.4441 23 6 2.0692 -3.7302 6.2326 24 6 2.1936 -2.4804 5.6564 25 7 2.4672 -2.3537 4.3725 26 1 -0.3634 -0.0921 1.0236 27 1 -0.3634 0.9324 -0.4320 28 1 -0.3633 -0.8404 -0.5914 29 1 5.2103 -1.5552 -1.0377 30 1 5.6686 -0.7850 0.5002 31 1 4.7677 -2.3201 0.5074 32 1 2.7698 -3.1840 -0.4104 33 1 1.0614 -2.7205 -0.5972 34 1 1.3101 -4.9745 0.7221 35 1 0.8654 -4.6516 2.4152 36 1 -1.8662 -6.8153 1.3676 37 1 3.5721 -2.3213 2.0105 38 1 3.4679 -4.0787 1.7479 39 1 2.6589 -5.5408 3.4532 40 1 2.1540 -5.8474 5.8680 41 1 1.8451 -3.8274 7.2846 42 1 2.0651 -1.5971 6.2645 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078969965.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:41 Heat of formation + Delta-G solvation = 97.348699 kcal Electronic energy + Delta-G solvation = -24886.179467 eV Core-core repulsion = 21448.622952 eV Total energy + Delta-G solvation = -3437.556515 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 301.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -44.47422 -39.83608 -37.12817 -34.33193 -33.24738 -32.63338 -32.04365 -31.21848 -28.39662 -28.11164 -27.48558 -26.23117 -24.27562 -23.16924 -22.03098 -21.33169 -20.01711 -19.59748 -17.29078 -16.69586 -16.50182 -16.35175 -15.81403 -15.29587 -14.79776 -14.59824 -14.08959 -13.95099 -13.57434 -13.23592 -13.07444 -12.97211 -12.87894 -12.70523 -12.42975 -12.28519 -12.12089 -11.96517 -11.66030 -11.43477 -11.09904 -11.01911 -10.73360 -10.58745 -10.48713 -9.97957 -9.51674 -9.39221 -9.24015 -9.00328 -8.75074 -8.58578 -8.44499 -7.35508 -6.07351 -4.07723 1.47478 1.68474 1.85013 2.68061 3.29947 3.34527 3.37436 3.48379 4.12715 4.39916 4.64480 4.68176 4.84029 5.00071 5.14631 5.18278 5.25430 5.30385 5.39397 5.40130 5.46670 5.50401 5.58455 5.74736 5.83615 5.86601 5.96095 6.01163 6.05736 6.12569 6.17456 6.20136 6.31136 6.45203 6.50133 6.53789 6.70056 7.05260 7.16147 7.20609 7.74717 8.00130 8.10089 8.43206 8.47135 8.70765 8.98512 9.56060 11.03303 Molecular weight = 301.15amu Principal moments of inertia in cm(-1) A = 0.008888 B = 0.007097 C = 0.004637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3149.691958 B = 3944.120915 C = 6036.991777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.044 3.956 3 N -0.380 5.380 4 O 0.087 5.913 5 C -0.049 4.049 6 C -0.072 4.072 7 C -0.168 4.168 8 C 0.137 3.863 9 N -0.519 5.519 10 C 0.187 3.813 11 C -0.504 4.504 12 H 0.064 0.936 13 C 0.058 3.942 14 N -0.898 5.898 15 Si 0.893 3.107 16 H -0.276 1.276 17 H -0.288 1.288 18 H -0.276 1.276 19 C 0.098 3.902 20 C 0.154 3.846 21 C -0.153 4.153 22 C -0.077 4.077 23 C -0.183 4.183 24 C 0.093 3.907 25 N -0.467 5.467 26 H 0.085 0.915 27 H 0.064 0.936 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.036 0.964 33 H 0.100 0.900 34 H -0.010 1.010 35 H 0.041 0.959 36 H 0.261 0.739 37 H 0.080 0.920 38 H 0.039 0.961 39 H 0.132 0.868 40 H 0.129 0.871 41 H 0.127 0.873 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.641 4.305 2.403 11.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.115 4.115 3 N -0.088 5.088 4 O 0.024 5.976 5 C -0.113 4.113 6 C -0.130 4.130 7 C -0.172 4.172 8 C 0.008 3.992 9 N -0.244 5.244 10 C 0.063 3.937 11 C -0.543 4.543 12 H 0.082 0.918 13 C -0.144 4.144 14 N -0.538 5.538 15 Si 0.721 3.279 16 H -0.202 1.202 17 H -0.214 1.214 18 H -0.202 1.202 19 C -0.030 4.030 20 C 0.015 3.985 21 C -0.174 4.174 22 C -0.103 4.103 23 C -0.203 4.203 24 C -0.064 4.064 25 N -0.177 5.177 26 H 0.103 0.897 27 H 0.083 0.917 28 H 0.103 0.897 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.107 0.893 32 H 0.054 0.946 33 H 0.118 0.882 34 H 0.008 0.992 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.099 0.901 38 H 0.057 0.943 39 H 0.150 0.850 40 H 0.147 0.853 41 H 0.145 0.855 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 10.156 6.632 2.292 12.345 hybrid contribution -0.919 -2.253 -0.065 2.434 sum 9.238 4.379 2.227 10.463 Atomic orbital electron populations 1.20148 0.86008 1.02691 1.04104 1.23391 0.98911 0.88260 1.00890 1.73763 0.89295 1.24128 1.21634 1.84716 1.21802 1.22478 1.68630 1.24104 0.98065 0.83950 1.05145 1.20339 0.90365 0.98690 1.03569 1.21106 0.90974 0.98153 1.06975 1.20232 1.00852 0.86594 0.91481 1.61990 1.14194 1.36953 1.11249 1.19899 0.91930 0.84281 0.97593 1.21095 0.93526 0.96137 1.43549 0.91808 1.24939 0.98856 0.94986 0.95581 1.69930 1.34112 1.01652 1.48071 0.86631 0.84386 0.77655 0.79201 1.20186 1.21395 1.20199 1.21025 0.93424 1.00160 0.88402 1.21047 0.93507 0.88305 0.95632 1.22012 1.00825 0.98562 0.95955 1.21487 0.96023 0.99021 0.93778 1.22023 1.03330 0.93995 1.00981 1.22645 0.95826 0.96691 0.91283 1.67455 1.11041 1.34294 1.04864 0.89662 0.91698 0.89677 0.89884 0.90188 0.89324 0.94588 0.88171 0.99187 0.94069 0.92919 0.90136 0.94285 0.84971 0.85288 0.85481 0.83445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.20 10.39 36.01 0.37 -0.82 16 2 C 0.04 0.80 7.33 -82.10 -0.60 0.20 16 3 N -0.38 -6.94 12.07 33.42 0.40 -6.53 16 4 O 0.09 1.45 11.20 17.19 0.19 1.65 16 5 C -0.05 -0.73 6.92 -35.30 -0.24 -0.98 16 6 C -0.07 -0.77 9.79 36.01 0.35 -0.41 16 7 C -0.17 -2.90 5.32 -104.42 -0.56 -3.45 16 8 C 0.14 2.49 5.10 -4.98 -0.03 2.46 16 9 N -0.52 -10.61 4.37 -238.96 -1.04 -11.66 16 10 C 0.19 4.53 4.57 -4.98 -0.02 4.51 16 11 C -0.50 -13.40 8.38 -34.44 -0.29 -13.69 16 12 H 0.06 1.67 7.55 -52.48 -0.40 1.28 16 13 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 14 N -0.90 -25.53 13.29 55.43 0.74 -24.80 16 15 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 17 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 C 0.10 1.74 4.52 -4.98 -0.02 1.72 16 20 C 0.15 2.82 5.69 -82.59 -0.47 2.35 16 21 C -0.15 -2.61 8.03 -39.44 -0.32 -2.93 16 22 C -0.08 -1.15 10.18 -39.28 -0.40 -1.55 16 23 C -0.18 -2.56 10.11 -39.44 -0.40 -2.96 16 24 C 0.09 1.44 11.18 -17.55 -0.20 1.25 16 25 N -0.47 -8.70 10.27 -9.47 -0.10 -8.80 16 26 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.08 1.41 7.99 -51.93 -0.41 0.99 16 29 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.09 0.94 6.01 -51.93 -0.31 0.63 16 32 H 0.04 0.59 7.67 -51.93 -0.40 0.19 16 33 H 0.10 1.99 6.79 -51.93 -0.35 1.63 16 34 H -0.01 -0.24 8.06 -51.93 -0.42 -0.66 16 35 H 0.04 1.07 5.57 -51.93 -0.29 0.78 16 36 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 37 H 0.08 1.34 5.28 -51.92 -0.27 1.07 16 38 H 0.04 0.63 8.02 -51.93 -0.42 0.21 16 39 H 0.13 2.17 8.01 -52.49 -0.42 1.75 16 40 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 41 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 42 H 0.15 1.85 8.06 -52.49 -0.42 1.43 16 LS Contribution 351.04 15.07 5.29 5.29 Total: -1.00 -31.50 351.04 -8.24 -39.74 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -5.79 Total: 1.88 kcal Atomic # 6 Polarization: -9.92 SS G_CDS: -2.91 Total: -12.83 kcal Atomic # 7 Polarization: -51.78 SS G_CDS: 0.00 Total: -51.78 kcal Atomic # 8 Polarization: 1.45 SS G_CDS: 0.19 Total: 1.65 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.50 -8.24 -39.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078969965.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.088 kcal (2) G-P(sol) polarization free energy of solvation -31.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds