Wall clock time and date at job start Tue Mar 31 2020 03:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30174 * 126.79998 * 2 1 4 4 O 1.20920 * 111.60067 * 180.25151 * 3 2 1 5 5 C 1.34034 * 111.57121 * 359.74286 * 4 3 2 6 6 C 1.50704 * 126.78187 * 179.97438 * 5 4 3 7 7 C 1.35455 * 106.44692 * 0.02562 * 5 4 3 8 8 C 1.50699 * 128.01073 * 179.97438 * 7 5 4 9 9 N 1.46901 * 109.46990 * 96.24730 * 8 7 5 10 10 C 1.46897 * 110.99858 * 160.48954 * 9 8 7 11 11 C 1.50701 * 109.47452 * 288.59985 * 10 9 8 12 12 H 1.08007 * 119.99915 * 3.32254 * 11 10 9 13 13 C 1.37871 * 120.00198 * 183.31963 * 11 10 9 14 14 N 1.31517 * 120.00165 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99924 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47466 * 60.00152 * 15 13 11 17 17 H 1.48509 * 109.46905 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47243 * 299.99671 * 15 13 11 19 19 C 1.46892 * 111.00128 * 284.44277 * 9 8 7 20 20 C 1.50705 * 109.47292 * 169.99810 * 19 9 8 21 21 C 1.38224 * 119.61412 * 94.98188 * 20 19 9 22 22 C 1.38626 * 119.16251 * 179.79454 * 21 20 19 23 23 C 1.38678 * 118.41884 * 0.47083 * 22 21 20 24 24 C 1.38186 * 119.15974 * 359.50749 * 23 22 21 25 25 N 1.31847 * 119.61952 * 275.00330 * 20 19 9 26 26 H 1.09005 * 109.47320 * 264.86025 * 1 2 3 27 27 H 1.09001 * 109.47290 * 24.85823 * 1 2 3 28 28 H 1.08999 * 109.46934 * 144.86424 * 1 2 3 29 29 H 1.09004 * 109.46945 * 270.00261 * 6 5 4 30 30 H 1.08999 * 109.46972 * 29.99912 * 6 5 4 31 31 H 1.08997 * 109.46990 * 150.00200 * 6 5 4 32 32 H 1.08996 * 109.46960 * 336.24868 * 8 7 5 33 33 H 1.08998 * 109.46807 * 216.25031 * 8 7 5 34 34 H 1.09006 * 109.47033 * 48.60099 * 10 9 8 35 35 H 1.09002 * 109.47039 * 168.59966 * 10 9 8 36 36 H 0.97001 * 120.00056 * 179.97438 * 14 13 11 37 37 H 1.09011 * 109.47089 * 50.00017 * 19 9 8 38 38 H 1.09000 * 109.47726 * 290.00527 * 19 9 8 39 39 H 1.08002 * 120.42029 * 359.97438 * 21 20 19 40 40 H 1.07997 * 120.79382 * 180.22806 * 22 21 20 41 41 H 1.07997 * 120.42420 * 179.78581 * 23 22 21 42 42 H 1.08001 * 119.61687 * 180.25619 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4537 0.7253 -0.0049 5 6 3.6025 -0.6067 -0.0034 6 6 4.9022 -1.3696 -0.0087 7 6 2.3540 -1.1321 0.0028 8 6 1.9591 -2.5864 0.0064 9 7 1.6914 -3.0177 1.3849 10 6 0.8799 -4.2420 1.4052 11 6 -0.5275 -3.9191 0.9739 12 1 -0.7795 -2.9169 0.6597 13 6 -1.4935 -4.9028 0.9805 14 7 -1.1865 -6.1233 1.3627 15 14 -3.2378 -4.5026 0.4453 16 1 -3.2265 -4.0205 -0.9592 17 1 -4.0780 -5.7232 0.5434 18 1 -3.7960 -3.4460 1.3269 19 6 2.9431 -3.2034 2.1308 20 6 2.6324 -3.4033 3.5919 21 6 2.5233 -4.6849 4.0979 22 6 2.2414 -4.8579 5.4441 23 6 2.0692 -3.7302 6.2326 24 6 2.1936 -2.4804 5.6564 25 7 2.4672 -2.3537 4.3725 26 1 -0.3634 -0.0921 1.0236 27 1 -0.3634 0.9324 -0.4320 28 1 -0.3633 -0.8404 -0.5914 29 1 5.2103 -1.5552 -1.0377 30 1 5.6686 -0.7850 0.5002 31 1 4.7677 -2.3201 0.5074 32 1 2.7698 -3.1840 -0.4104 33 1 1.0614 -2.7205 -0.5972 34 1 1.3101 -4.9745 0.7221 35 1 0.8654 -4.6516 2.4152 36 1 -1.8662 -6.8153 1.3676 37 1 3.5721 -2.3213 2.0105 38 1 3.4679 -4.0787 1.7479 39 1 2.6589 -5.5408 3.4532 40 1 2.1540 -5.8474 5.8680 41 1 1.8451 -3.8274 7.2846 42 1 2.0651 -1.5971 6.2645 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078969965.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:41 Heat of formation + Delta-G solvation = 78.065457 kcal Electronic energy + Delta-G solvation = -24887.015651 eV Core-core repulsion = 21448.622952 eV Total energy + Delta-G solvation = -3438.392699 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 301.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -45.81432 -41.09462 -38.63486 -35.73879 -34.80165 -34.22351 -33.31760 -32.55160 -29.85939 -29.36610 -29.13194 -27.50170 -25.97492 -24.41329 -23.59373 -22.70420 -21.49421 -20.89385 -18.68131 -18.48371 -17.85901 -17.68882 -17.18169 -16.63844 -16.42912 -16.18256 -15.46681 -15.35409 -14.99656 -14.44681 -14.32459 -14.28679 -14.05408 -14.03855 -13.83255 -13.65330 -13.54950 -13.26769 -13.12074 -12.94276 -12.76402 -12.54447 -12.40309 -12.33127 -11.88722 -11.76279 -11.30227 -10.74338 -10.70044 -10.53282 -10.26791 -10.02804 -9.81944 -8.96936 -8.15187 -6.21684 0.24451 0.46804 0.58963 1.30127 1.41546 1.43120 1.50065 2.29019 2.42088 2.86547 3.18067 3.30067 3.46233 3.58227 3.65973 3.90858 3.92311 4.06649 4.21759 4.24545 4.31701 4.42748 4.48603 4.56780 4.63750 4.67879 4.70901 4.76416 4.80892 4.82889 4.90039 4.94760 4.98855 5.20440 5.22230 5.30009 5.30503 5.34769 5.38474 5.71883 5.87791 6.11864 6.37152 6.62365 6.92163 7.19516 7.39993 7.46042 8.94769 Molecular weight = 301.15amu Principal moments of inertia in cm(-1) A = 0.008888 B = 0.007097 C = 0.004637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3149.691958 B = 3944.120915 C = 6036.991777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.027 3.973 3 N -0.398 5.398 4 O 0.088 5.912 5 C -0.026 4.026 6 C -0.074 4.074 7 C -0.194 4.194 8 C 0.145 3.855 9 N -0.530 5.530 10 C 0.206 3.794 11 C -0.515 4.515 12 H 0.061 0.939 13 C 0.009 3.991 14 N -0.929 5.929 15 Si 0.952 3.048 16 H -0.266 1.266 17 H -0.285 1.285 18 H -0.276 1.276 19 C 0.102 3.898 20 C 0.128 3.872 21 C -0.172 4.172 22 C -0.082 4.082 23 C -0.173 4.173 24 C 0.080 3.920 25 N -0.499 5.499 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.110 0.890 30 H 0.103 0.897 31 H 0.090 0.910 32 H 0.055 0.945 33 H 0.077 0.923 34 H -0.031 1.031 35 H 0.022 0.978 36 H 0.262 0.738 37 H 0.090 0.910 38 H 0.051 0.949 39 H 0.128 0.872 40 H 0.156 0.844 41 H 0.167 0.833 42 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.401 4.742 3.068 12.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.131 4.131 3 N -0.107 5.107 4 O 0.025 5.975 5 C -0.090 4.090 6 C -0.131 4.131 7 C -0.198 4.198 8 C 0.017 3.983 9 N -0.255 5.255 10 C 0.080 3.920 11 C -0.553 4.553 12 H 0.079 0.921 13 C -0.189 4.189 14 N -0.570 5.570 15 Si 0.778 3.222 16 H -0.191 1.191 17 H -0.211 1.211 18 H -0.201 1.201 19 C -0.026 4.026 20 C -0.010 4.010 21 C -0.192 4.192 22 C -0.108 4.108 23 C -0.192 4.192 24 C -0.077 4.077 25 N -0.209 5.209 26 H 0.090 0.910 27 H 0.101 0.899 28 H 0.099 0.901 29 H 0.128 0.872 30 H 0.121 0.879 31 H 0.109 0.891 32 H 0.073 0.927 33 H 0.095 0.905 34 H -0.013 1.013 35 H 0.040 0.960 36 H 0.071 0.929 37 H 0.108 0.892 38 H 0.069 0.931 39 H 0.146 0.854 40 H 0.174 0.826 41 H 0.184 0.816 42 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 10.933 7.086 2.946 13.357 hybrid contribution -1.065 -2.366 -0.197 2.602 sum 9.868 4.720 2.749 11.279 Atomic orbital electron populations 1.20098 0.85699 1.03466 1.03244 1.23662 0.99541 0.88760 1.01153 1.73746 0.89806 1.24446 1.22676 1.84691 1.21219 1.23259 1.68322 1.24798 0.99096 0.83270 1.01852 1.20609 0.88530 0.98286 1.05681 1.21009 0.91992 0.97328 1.09502 1.20068 1.00494 0.87662 0.90065 1.61861 1.15846 1.34894 1.12854 1.19500 0.91614 0.85241 0.95602 1.21424 0.94898 0.95957 1.43043 0.92120 1.25686 1.02549 0.94887 0.95756 1.70041 1.35204 1.02445 1.49269 0.85695 0.79948 0.77371 0.79196 1.19114 1.21097 1.20108 1.21047 0.92240 1.01070 0.88234 1.21139 0.95045 0.88915 0.95898 1.22118 1.01774 0.98056 0.97249 1.21895 0.94991 1.00849 0.93043 1.22437 1.01209 0.92881 1.02705 1.23215 0.95216 0.98613 0.90698 1.67426 1.12277 1.34788 1.06388 0.91031 0.89881 0.90143 0.87150 0.87881 0.89146 0.92678 0.90460 1.01296 0.96000 0.92948 0.89170 0.93055 0.85441 0.82646 0.81596 0.80810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.29 10.39 71.24 0.74 -1.55 16 2 C 0.03 0.98 7.33 43.58 0.32 1.30 16 3 N -0.40 -14.31 12.07 -49.57 -0.60 -14.91 16 4 O 0.09 2.81 11.20 71.69 0.80 3.61 16 5 C -0.03 -0.74 6.92 25.04 0.17 -0.56 16 6 C -0.07 -1.35 9.79 71.24 0.70 -0.66 16 7 C -0.19 -6.62 5.32 -19.73 -0.10 -6.73 16 8 C 0.14 5.32 5.10 85.56 0.44 5.76 16 9 N -0.53 -22.01 4.37 -909.94 -3.97 -25.99 16 10 C 0.21 10.26 4.57 85.56 0.39 10.65 16 11 C -0.51 -27.93 8.38 25.60 0.21 -27.72 16 12 H 0.06 3.26 7.55 -2.91 -0.02 3.24 16 13 C 0.01 0.52 5.46 84.65 0.46 0.98 16 14 N -0.93 -53.64 13.29 21.45 0.28 -53.35 16 15 Si 0.95 43.52 29.54 68.60 2.03 45.54 16 16 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 17 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 18 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 19 C 0.10 3.61 4.52 85.56 0.39 4.00 16 20 C 0.13 4.71 5.69 42.55 0.24 4.95 16 21 C -0.17 -5.86 8.03 22.36 0.18 -5.68 16 22 C -0.08 -2.32 10.18 22.47 0.23 -2.09 16 23 C -0.17 -4.41 10.11 22.36 0.23 -4.18 16 24 C 0.08 2.35 11.18 84.67 0.95 3.30 16 25 N -0.50 -18.36 10.27 -183.88 -1.89 -20.25 16 26 H 0.07 2.58 8.14 -2.38 -0.02 2.56 16 27 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 28 H 0.08 2.74 7.99 -2.39 -0.02 2.72 16 29 H 0.11 1.51 8.14 -2.38 -0.02 1.49 16 30 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.09 1.68 6.01 -2.39 -0.01 1.67 16 32 H 0.06 1.77 7.67 -2.39 -0.02 1.75 16 33 H 0.08 3.16 6.79 -2.39 -0.02 3.14 16 34 H -0.03 -1.62 8.06 -2.38 -0.02 -1.63 16 35 H 0.02 1.18 5.57 -2.39 -0.01 1.16 16 36 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 37 H 0.09 2.95 5.28 -2.38 -0.01 2.94 16 38 H 0.05 1.65 8.02 -2.39 -0.02 1.63 16 39 H 0.13 4.32 8.01 -2.91 -0.02 4.29 16 40 H 0.16 3.45 8.06 -2.91 -0.02 3.43 16 41 H 0.17 2.87 8.06 -2.91 -0.02 2.85 16 42 H 0.17 3.98 8.06 -2.91 -0.02 3.96 16 Total: -1.00 -68.92 351.04 3.22 -65.71 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: 1.02 Total: 17.86 kcal Atomic # 6 Polarization: -23.76 SS G_CDS: 5.54 Total: -18.22 kcal Atomic # 7 Polarization: -108.32 SS G_CDS: -6.18 Total: -114.50 kcal Atomic # 8 Polarization: 2.81 SS G_CDS: 0.80 Total: 3.61 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Total: -68.92 3.22 -65.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078969965.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.771 kcal (2) G-P(sol) polarization free energy of solvation -68.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds