Wall clock time and date at job start Tue Mar 31 2020 03:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46897 * 111.00083 * 2 1 4 4 C 1.50702 * 109.46881 * 293.95180 * 3 2 1 5 5 O 1.21286 * 120.00210 * 0.02562 * 4 3 2 6 6 N 1.34778 * 119.99839 * 180.02562 * 4 3 2 7 7 C 1.37101 * 120.00084 * 180.02562 * 6 4 3 8 8 H 1.07994 * 119.99968 * 359.97438 * 7 6 4 9 9 C 1.38948 * 120.00111 * 180.02562 * 7 6 4 10 10 N 1.31408 * 120.00187 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00017 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47390 * 59.99973 * 11 9 7 13 13 H 1.48509 * 109.47295 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.47165 * 299.99757 * 11 9 7 15 15 C 1.46899 * 110.99812 * 123.94973 * 2 1 3 16 16 C 1.53007 * 109.47083 * 66.05190 * 15 2 1 17 17 H 1.09009 * 109.46359 * 304.99680 * 16 15 2 18 18 O 1.42897 * 109.47057 * 64.99532 * 16 15 2 19 19 C 1.52999 * 109.46950 * 185.00067 * 16 15 2 20 20 N 1.46907 * 109.46641 * 176.98110 * 19 16 15 21 21 C 1.47023 * 110.99406 * 160.56884 * 20 19 16 22 22 C 1.53100 * 109.25343 * 182.34845 * 21 20 19 23 23 O 1.43023 * 109.29125 * 303.21994 * 22 21 20 24 24 C 1.43005 * 113.74260 * 58.64671 * 23 22 21 25 25 C 1.47017 * 110.99652 * 284.24500 * 20 19 16 26 26 H 1.08997 * 109.47566 * 296.04883 * 1 2 3 27 27 H 1.09006 * 109.47082 * 56.04709 * 1 2 3 28 28 H 1.08997 * 109.47023 * 176.04545 * 1 2 3 29 29 H 1.08999 * 109.47685 * 53.95058 * 3 2 1 30 30 H 1.08997 * 109.47313 * 173.95494 * 3 2 1 31 31 H 0.97001 * 120.00080 * 359.97438 * 6 4 3 32 32 H 0.97004 * 120.00754 * 180.02562 * 10 9 7 33 33 H 1.09000 * 109.47672 * 306.04882 * 15 2 1 34 34 H 1.09004 * 109.47322 * 186.04763 * 15 2 1 35 35 H 0.96696 * 113.99871 * 60.00671 * 18 16 15 36 36 H 1.08999 * 109.47300 * 56.97869 * 19 16 15 37 37 H 1.08994 * 109.47079 * 296.97403 * 19 16 15 38 38 H 1.08997 * 109.47155 * 62.43377 * 21 20 19 39 39 H 1.08995 * 109.54515 * 302.30134 * 21 20 19 40 40 H 1.08996 * 109.50655 * 183.26363 * 22 21 20 41 41 H 1.08998 * 109.50666 * 63.16911 * 22 21 20 42 42 H 1.09004 * 109.50783 * 61.26494 * 24 23 22 43 43 H 1.08996 * 109.51156 * 181.35217 * 24 23 22 44 44 H 1.08994 * 109.50488 * 57.68163 * 25 20 19 45 45 H 1.09001 * 109.50881 * 297.54461 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0470 -1.2985 5 8 1.0047 1.4455 -2.1408 6 7 2.0189 3.3198 -1.5238 7 6 1.6923 3.9346 -2.7049 8 1 1.1294 3.3990 -3.4549 9 6 2.0866 5.2466 -2.9374 10 7 2.7720 5.8982 -2.0250 11 14 1.6423 6.0841 -4.5469 12 1 0.1650 6.1220 -4.6938 13 1 2.1761 7.4699 -4.5477 14 1 2.2330 5.3260 -5.6789 15 6 1.9954 -0.7659 1.1376 16 6 1.6315 -2.2426 0.9704 17 1 0.5531 -2.3388 0.8433 18 8 2.2956 -2.7695 -0.1799 19 6 2.0699 -3.0198 2.2132 20 7 1.6562 -4.4235 2.0841 21 6 2.4277 -5.2856 2.9914 22 6 2.0068 -6.7427 2.7827 23 8 0.5967 -6.8616 2.9899 24 6 -0.1844 -6.0362 2.1218 25 6 0.2134 -4.5717 2.3245 26 1 -0.3634 0.4513 0.9232 27 1 -0.3633 0.5740 -0.8525 28 1 -0.3633 -1.0252 -0.0709 29 1 1.5611 1.9274 0.8308 30 1 3.0797 1.3444 0.1082 31 1 2.5242 3.8010 -0.8500 32 1 3.0470 6.8142 -2.1871 33 1 1.5610 -0.3872 2.0629 34 1 3.0797 -0.6610 1.1758 35 1 3.2601 -2.7166 -0.1358 36 1 1.6048 -2.5837 3.0973 37 1 3.1543 -2.9681 2.3103 38 1 2.2319 -4.9944 4.0233 39 1 3.4913 -5.1799 2.7783 40 1 2.5341 -7.3792 3.4934 41 1 2.2525 -7.0506 1.7664 42 1 -0.0025 -6.3227 1.0860 43 1 -1.2419 -6.1621 2.3539 44 1 -0.3385 -3.9444 1.6246 45 1 -0.0184 -4.2696 3.3459 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083244438.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:41 Heat of formation + Delta-G solvation = -139.110812 kcal Electronic energy + Delta-G solvation = -24970.205070 eV Core-core repulsion = 21215.085982 eV Total energy + Delta-G solvation = -3755.119089 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 301.183 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.72634 -40.32386 -38.98413 -37.08127 -36.06911 -35.74257 -33.27003 -32.18070 -31.55479 -29.53304 -28.55316 -26.99380 -25.84369 -25.01922 -23.43496 -21.93443 -21.37015 -20.95298 -19.84187 -18.14669 -17.50376 -17.34172 -16.92593 -16.80252 -16.67748 -16.46475 -16.20129 -16.00518 -15.72921 -15.64949 -15.26156 -14.95668 -14.83036 -14.66801 -13.89095 -13.73259 -13.46009 -13.40526 -13.03832 -12.90154 -12.69221 -12.57541 -12.48934 -12.41736 -12.38208 -12.24774 -12.11766 -11.62180 -11.53945 -11.44761 -11.01557 -10.58733 -10.21901 -9.98804 -9.32514 -9.12277 -8.45467 -5.93905 1.40063 1.41622 1.52489 2.07561 2.28404 2.53614 2.87360 2.98808 3.21301 3.42014 3.69244 3.81258 3.91604 3.99089 4.10326 4.12321 4.18914 4.22465 4.33349 4.35552 4.41107 4.46267 4.53391 4.55505 4.60899 4.66782 4.69942 4.72216 4.74662 4.80457 4.89965 5.01156 5.08802 5.21775 5.41762 5.87566 5.94425 5.97017 6.08347 6.16889 6.24183 6.62678 7.08093 7.14668 7.58346 8.15124 8.71736 Molecular weight = 301.18amu Principal moments of inertia in cm(-1) A = 0.046890 B = 0.002287 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.000656 B =12240.503671 C =12425.731125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.530 5.530 3 C 0.058 3.942 4 C 0.440 3.560 5 O -0.615 6.615 6 N -0.576 5.576 7 C -0.332 4.332 8 H 0.077 0.923 9 C -0.014 4.014 10 N -0.921 5.921 11 Si 0.992 3.008 12 H -0.272 1.272 13 H -0.270 1.270 14 H -0.273 1.273 15 C 0.025 3.975 16 C 0.126 3.874 17 H 0.081 0.919 18 O -0.557 6.557 19 C 0.032 3.968 20 N -0.540 5.540 21 C 0.020 3.980 22 C 0.060 3.940 23 O -0.406 6.406 24 C 0.063 3.937 25 C 0.017 3.983 26 H 0.030 0.970 27 H 0.052 0.948 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.111 0.889 31 H 0.396 0.604 32 H 0.277 0.723 33 H 0.054 0.946 34 H 0.094 0.906 35 H 0.379 0.621 36 H 0.052 0.948 37 H 0.095 0.905 38 H 0.040 0.960 39 H 0.100 0.900 40 H 0.116 0.884 41 H 0.056 0.944 42 H 0.054 0.946 43 H 0.111 0.889 44 H 0.083 0.917 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.932 -19.513 15.515 24.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.254 5.254 3 C -0.073 4.073 4 C 0.228 3.772 5 O -0.500 6.500 6 N -0.213 5.213 7 C -0.462 4.462 8 H 0.095 0.905 9 C -0.213 4.213 10 N -0.562 5.562 11 Si 0.816 3.184 12 H -0.198 1.198 13 H -0.194 1.194 14 H -0.198 1.198 15 C -0.103 4.103 16 C 0.066 3.934 17 H 0.099 0.901 18 O -0.363 6.363 19 C -0.096 4.096 20 N -0.265 5.265 21 C -0.108 4.108 22 C -0.017 4.017 23 O -0.325 6.325 24 C -0.014 4.014 25 C -0.111 4.111 26 H 0.049 0.951 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.129 0.871 31 H 0.230 0.770 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.112 0.888 35 H 0.227 0.773 36 H 0.070 0.930 37 H 0.114 0.886 38 H 0.059 0.941 39 H 0.119 0.881 40 H 0.134 0.866 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.129 0.871 44 H 0.102 0.898 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 0.155 -20.336 14.003 24.691 hybrid contribution 0.199 1.941 0.973 2.180 sum 0.355 -18.395 14.975 23.723 Atomic orbital electron populations 1.22401 0.87348 1.02024 1.00205 1.61399 1.08453 1.11887 1.43642 1.21747 1.02126 0.89583 0.93806 1.20831 0.83667 0.82186 0.90522 1.90474 1.45086 1.65365 1.49123 1.41934 1.50171 1.11603 1.17624 1.19600 1.34361 0.96427 0.95762 0.90485 1.26017 0.96315 0.96620 1.02370 1.69660 1.38115 1.12686 1.35743 0.85006 0.78596 0.77305 0.77528 1.19759 1.19433 1.19801 1.22940 1.01650 0.94417 0.91293 1.21765 0.97235 0.89180 0.85242 0.90081 1.86630 1.23970 1.84143 1.41543 1.22771 1.02175 0.87749 0.96950 1.62054 1.04075 1.07322 1.53073 1.22839 0.99614 0.93792 0.94516 1.22815 0.81023 0.95535 1.02328 1.87948 1.18397 1.65438 1.60674 1.22723 0.96248 0.88268 0.94129 1.22820 0.89423 0.98501 1.00326 0.95133 0.92874 0.90962 0.91584 0.87105 0.77032 0.91328 0.92821 0.88786 0.77321 0.92953 0.88638 0.94126 0.88147 0.86641 0.92551 0.92740 0.87060 0.89822 0.93964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.93 8.97 127.69 1.15 2.07 16 2 N -0.53 -17.03 4.45 -927.05 -4.12 -21.16 16 3 C 0.06 2.01 5.45 85.56 0.47 2.48 16 4 C 0.44 21.26 7.47 87.66 0.66 21.91 16 5 O -0.61 -34.71 13.91 -3.05 -0.04 -34.75 16 6 N -0.58 -29.82 5.29 -306.99 -1.62 -31.45 16 7 C -0.33 -19.06 9.68 84.04 0.81 -18.25 16 8 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 9 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 10 N -0.92 -49.91 13.05 21.66 0.28 -49.62 16 11 Si 0.99 43.36 29.55 68.60 2.03 45.39 16 12 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 13 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 14 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 15 C 0.03 0.54 4.59 86.31 0.40 0.94 16 16 C 0.13 2.60 3.00 30.60 0.09 2.69 16 17 H 0.08 1.91 5.00 -2.38 -0.01 1.90 16 18 O -0.56 -14.18 13.20 -148.98 -1.97 -16.14 16 19 C 0.03 0.48 4.65 86.30 0.40 0.88 16 20 N -0.54 -9.09 4.58 -895.18 -4.10 -13.19 16 21 C 0.02 0.27 5.60 86.31 0.48 0.76 16 22 C 0.06 0.84 7.01 72.02 0.50 1.34 16 23 O -0.41 -7.58 10.83 -148.98 -1.61 -9.19 16 24 C 0.06 1.04 7.01 72.02 0.50 1.54 16 25 C 0.02 0.29 5.47 86.31 0.47 0.76 16 26 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.05 2.22 5.82 -2.38 -0.01 2.21 16 28 H 0.07 2.16 6.37 -2.39 -0.02 2.14 16 29 H 0.07 2.02 8.12 -2.39 -0.02 2.00 16 30 H 0.11 3.29 7.93 -2.39 -0.02 3.27 16 31 H 0.40 19.36 7.90 -92.71 -0.73 18.63 16 32 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 33 H 0.05 0.99 8.12 -2.39 -0.02 0.97 16 34 H 0.09 1.70 7.93 -2.38 -0.02 1.68 16 35 H 0.38 7.11 9.04 -74.06 -0.67 6.44 16 36 H 0.05 0.72 7.99 -2.39 -0.02 0.70 16 37 H 0.10 1.12 7.86 -2.39 -0.02 1.11 16 38 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.10 1.05 8.02 -2.39 -0.02 1.03 16 40 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.08 1.46 6.77 -2.39 -0.02 1.44 16 45 H 0.04 0.68 8.13 -2.39 -0.02 0.67 16 Total: -1.00 -72.78 359.90 -5.15 -77.93 By element: Atomic # 1 Polarization: 35.72 SS G_CDS: -0.40 Total: 35.32 kcal Atomic # 6 Polarization: 10.46 SS G_CDS: 6.40 Total: 16.86 kcal Atomic # 7 Polarization: -105.86 SS G_CDS: -9.56 Total: -115.42 kcal Atomic # 8 Polarization: -56.47 SS G_CDS: -3.62 Total: -60.09 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -72.78 -5.15 -77.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083244438.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.179 kcal (2) G-P(sol) polarization free energy of solvation -72.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds