Wall clock time and date at job start Tue Mar 31 2020 03:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34738 * 116.99991 * 2 1 4 4 O 1.21489 * 119.99710 * 0.02562 * 3 2 1 5 5 C 1.47545 * 119.99947 * 179.97438 * 3 2 1 6 6 N 1.31857 * 126.47006 * 0.02562 * 5 3 2 7 7 N 1.28474 * 110.12188 * 179.97438 * 6 5 3 8 8 C 1.46505 * 124.93055 * 179.97438 * 7 6 5 9 9 C 1.50705 * 109.46823 * 90.02415 * 8 7 6 10 10 H 1.08000 * 119.99695 * 359.97438 * 9 8 7 11 11 C 1.37875 * 119.99704 * 180.02562 * 9 8 7 12 12 N 1.31509 * 120.00162 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99957 * 179.97438 * 11 9 8 14 14 H 1.48507 * 109.47237 * 89.99179 * 13 11 9 15 15 H 1.48496 * 109.47116 * 209.99458 * 13 11 9 16 16 H 1.48500 * 109.47118 * 329.99715 * 13 11 9 17 17 C 1.35632 * 110.14107 * 359.97438 * 7 6 5 18 18 C 1.50701 * 126.42339 * 180.02562 * 17 7 6 19 19 C 1.35421 * 107.14844 * 0.02562 * 17 7 6 20 20 Br 1.89104 * 127.23742 * 180.26086 * 19 17 7 21 21 H 1.08999 * 109.47349 * 300.00320 * 1 2 3 22 22 H 1.09000 * 109.47346 * 60.00111 * 1 2 3 23 23 H 1.09008 * 109.46840 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47381 * 210.02312 * 8 7 6 25 25 H 1.08996 * 109.46740 * 330.02711 * 8 7 6 26 26 H 0.97003 * 119.99927 * 180.02562 * 12 11 9 27 27 H 1.09004 * 109.47005 * 269.98024 * 18 17 7 28 28 H 1.09000 * 109.47122 * 29.98197 * 18 17 7 29 29 H 1.08999 * 109.46672 * 149.98809 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2005 0.0000 4 8 1.4019 2.2194 0.0005 5 6 3.5371 1.2777 0.0006 6 7 4.3753 0.2599 0.0006 7 7 5.5874 0.6855 0.0007 8 6 6.7769 -0.1699 0.0013 9 6 7.1852 -0.4633 -1.4194 10 1 6.6155 -0.0539 -2.2405 11 6 8.2855 -1.2552 -1.6708 12 7 8.9789 -1.7540 -0.6709 13 14 8.7914 -1.6195 -3.4317 14 1 9.7431 -0.5795 -3.8986 15 1 9.4444 -2.9518 -3.4936 16 1 7.5887 -1.6167 -4.3029 17 6 5.6062 2.0417 0.0000 18 6 6.8311 2.9196 -0.0007 19 6 4.3179 2.4588 0.0002 20 35 3.6930 4.2436 -0.0073 21 1 -0.3634 0.5139 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0278 0.0005 24 1 7.5912 0.3405 0.5153 25 1 6.5519 -1.1045 0.5151 26 1 9.7533 -2.3109 -0.8478 27 1 7.1265 3.1320 1.0268 28 1 7.6448 2.4075 -0.5142 29 1 6.6078 3.8543 -0.5151 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095438815.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:24 Heat of formation + Delta-G solvation = -13.482985 kcal Electronic energy + Delta-G solvation = -16772.556904 eV Core-core repulsion = 13743.948980 eV Total energy + Delta-G solvation = -3028.607924 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 302.005 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.20514 -39.81755 -36.14689 -34.09027 -32.69562 -32.21687 -29.98323 -28.41097 -27.10660 -26.38543 -24.30136 -22.26876 -20.35869 -19.66050 -17.09791 -16.84955 -16.73742 -16.17211 -15.67844 -15.05818 -14.45081 -13.64641 -13.44599 -13.10544 -12.90710 -12.75219 -12.33159 -12.03949 -11.91699 -11.74254 -11.27828 -10.97677 -10.80900 -10.71915 -10.59305 -10.50429 -10.36818 -9.93557 -9.53153 -8.81696 -8.58468 -8.25101 -6.44958 -4.54063 1.68837 1.99128 2.34988 2.78301 3.12507 3.19964 3.24332 3.46274 3.48950 4.16569 4.82464 4.93657 5.00691 5.20042 5.27070 5.33784 5.50034 5.66608 5.85796 6.09433 6.13160 6.42777 6.52687 6.68189 6.77811 7.29958 7.52355 7.60670 7.97333 8.44259 8.55305 9.14044 10.63422 Molecular weight = 302.01amu Principal moments of inertia in cm(-1) A = 0.017324 B = 0.005606 C = 0.004592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.851722 B = 4993.037743 C = 6096.522812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.344 6.344 3 C 0.557 3.443 4 O -0.494 6.494 5 C -0.014 4.014 6 N -0.211 5.211 7 N -0.228 5.228 8 C 0.242 3.758 9 C -0.546 4.546 10 H 0.068 0.932 11 C 0.071 3.929 12 N -0.886 5.886 13 Si 0.910 3.090 14 H -0.275 1.275 15 H -0.282 1.282 16 H -0.270 1.270 17 C 0.058 3.942 18 C -0.090 4.090 19 C -0.170 4.170 20 Br -0.008 7.008 21 H 0.061 0.939 22 H 0.062 0.938 23 H 0.100 0.900 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.271 0.729 27 H 0.078 0.922 28 H 0.091 0.909 29 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.739 8.637 2.431 12.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.259 6.259 3 C 0.400 3.600 4 O -0.379 6.379 5 C -0.171 4.171 6 N -0.050 5.050 7 N -0.018 5.018 8 C 0.126 3.874 9 C -0.585 4.585 10 H 0.086 0.914 11 C -0.134 4.134 12 N -0.523 5.523 13 Si 0.736 3.264 14 H -0.201 1.201 15 H -0.207 1.207 16 H -0.195 1.195 17 C -0.070 4.070 18 C -0.148 4.148 19 C -0.260 4.260 20 Br 0.075 6.925 21 H 0.080 0.920 22 H 0.080 0.920 23 H 0.118 0.882 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.097 0.903 28 H 0.110 0.890 29 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.914 8.194 2.489 12.361 hybrid contribution 0.256 0.075 -0.910 0.949 sum -8.659 8.270 1.579 12.077 Atomic orbital electron populations 1.23250 0.76540 1.03519 1.02356 1.86679 1.22866 1.32244 1.84150 1.19542 0.86307 0.81563 0.72619 1.90858 1.65383 1.35670 1.46029 1.20262 0.91034 0.89841 1.15947 1.73780 0.90409 1.25461 1.15385 1.46757 1.06082 1.04875 1.44064 1.20212 0.76914 0.89955 1.00347 1.21171 1.13290 1.33483 0.90515 0.91367 1.24898 0.95434 0.94539 0.98501 1.69902 1.18384 1.32788 1.31235 0.86284 0.78941 0.77966 0.83172 1.20117 1.20693 1.19498 1.21292 0.95684 0.85714 1.04328 1.20442 0.93238 0.97728 1.03357 1.21362 0.93112 0.91641 1.19917 1.96514 1.88710 1.09160 1.98098 0.91991 0.91961 0.88176 0.91678 0.91655 0.91905 0.90295 0.89016 0.89946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 10.56 101.05 1.07 1.51 15 2 O -0.34 -5.89 10.58 -40.60 -0.43 -6.32 15 3 C 0.56 10.59 7.96 34.53 0.27 10.87 15 4 O -0.49 -9.44 15.39 -19.26 -0.30 -9.74 15 5 C -0.01 -0.29 7.16 -82.79 -0.59 -0.89 15 6 N -0.21 -4.71 11.98 33.41 0.40 -4.31 15 7 N -0.23 -4.96 3.30 -58.12 -0.19 -5.15 15 8 C 0.24 5.62 5.66 -5.19 -0.03 5.59 15 9 C -0.55 -13.91 9.39 -34.44 -0.32 -14.23 15 10 H 0.07 1.79 7.81 -52.49 -0.41 1.38 15 11 C 0.07 1.81 5.46 -17.82 -0.10 1.71 15 12 N -0.89 -23.31 13.29 55.43 0.74 -22.57 15 13 Si 0.91 19.95 29.54 -169.99 -5.02 14.93 15 14 H -0.28 -5.91 7.11 56.52 0.40 -5.51 15 15 H -0.28 -6.11 7.11 56.52 0.40 -5.71 15 16 H -0.27 -6.00 7.11 56.52 0.40 -5.60 15 17 C 0.06 1.11 6.94 -81.92 -0.57 0.54 15 18 C -0.09 -1.37 9.71 36.01 0.35 -1.03 15 19 C -0.17 -3.27 6.67 -39.31 -0.26 -3.53 15 20 Br -0.01 -0.13 32.28 -68.01 -2.20 -2.33 15 21 H 0.06 0.68 8.14 -51.93 -0.42 0.26 15 22 H 0.06 0.70 8.14 -51.93 -0.42 0.27 15 23 H 0.10 0.89 8.14 -51.92 -0.42 0.46 15 24 H 0.07 1.47 7.58 -51.93 -0.39 1.07 15 25 H 0.07 1.61 8.14 -51.93 -0.42 1.19 15 26 H 0.27 6.75 8.31 -40.82 -0.34 6.41 15 27 H 0.08 1.05 8.14 -51.93 -0.42 0.62 15 28 H 0.09 1.48 7.68 -51.93 -0.40 1.08 15 29 H 0.08 1.11 7.90 -51.93 -0.41 0.70 15 LS Contribution 287.16 15.07 4.33 4.33 Total: -1.00 -28.27 287.16 -5.71 -33.98 By element: Atomic # 1 Polarization: -0.50 SS G_CDS: -2.86 Total: -3.36 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: -0.18 Total: 0.54 kcal Atomic # 7 Polarization: -32.98 SS G_CDS: 0.95 Total: -32.03 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: -0.73 Total: -16.06 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Atomic # 35 Polarization: -0.13 SS G_CDS: -2.20 Total: -2.33 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -28.27 -5.71 -33.98 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095438815.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.495 kcal (2) G-P(sol) polarization free energy of solvation -28.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds