Wall clock time and date at job start Tue Mar 31 2020 03:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34738 * 116.99991 * 2 1 4 4 O 1.21489 * 119.99710 * 0.02562 * 3 2 1 5 5 C 1.47545 * 119.99947 * 179.97438 * 3 2 1 6 6 N 1.31857 * 126.47006 * 0.02562 * 5 3 2 7 7 N 1.28474 * 110.12188 * 179.97438 * 6 5 3 8 8 C 1.46505 * 124.93055 * 179.97438 * 7 6 5 9 9 C 1.50705 * 109.46823 * 90.02415 * 8 7 6 10 10 H 1.08000 * 119.99695 * 359.97438 * 9 8 7 11 11 C 1.37875 * 119.99704 * 180.02562 * 9 8 7 12 12 N 1.31509 * 120.00162 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99957 * 179.97438 * 11 9 8 14 14 H 1.48507 * 109.47237 * 89.99179 * 13 11 9 15 15 H 1.48496 * 109.47116 * 209.99458 * 13 11 9 16 16 H 1.48500 * 109.47118 * 329.99715 * 13 11 9 17 17 C 1.35632 * 110.14107 * 359.97438 * 7 6 5 18 18 C 1.50701 * 126.42339 * 180.02562 * 17 7 6 19 19 C 1.35421 * 107.14844 * 0.02562 * 17 7 6 20 20 Br 1.89104 * 127.23742 * 180.26086 * 19 17 7 21 21 H 1.08999 * 109.47349 * 300.00320 * 1 2 3 22 22 H 1.09000 * 109.47346 * 60.00111 * 1 2 3 23 23 H 1.09008 * 109.46840 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47381 * 210.02312 * 8 7 6 25 25 H 1.08996 * 109.46740 * 330.02711 * 8 7 6 26 26 H 0.97003 * 119.99927 * 180.02562 * 12 11 9 27 27 H 1.09004 * 109.47005 * 269.98024 * 18 17 7 28 28 H 1.09000 * 109.47122 * 29.98197 * 18 17 7 29 29 H 1.08999 * 109.46672 * 149.98809 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2005 0.0000 4 8 1.4019 2.2194 0.0005 5 6 3.5371 1.2777 0.0006 6 7 4.3753 0.2599 0.0006 7 7 5.5874 0.6855 0.0007 8 6 6.7769 -0.1699 0.0013 9 6 7.1852 -0.4633 -1.4194 10 1 6.6155 -0.0539 -2.2405 11 6 8.2855 -1.2552 -1.6708 12 7 8.9789 -1.7540 -0.6709 13 14 8.7914 -1.6195 -3.4317 14 1 9.7431 -0.5795 -3.8986 15 1 9.4444 -2.9518 -3.4936 16 1 7.5887 -1.6167 -4.3029 17 6 5.6062 2.0417 0.0000 18 6 6.8311 2.9196 -0.0007 19 6 4.3179 2.4588 0.0002 20 35 3.6930 4.2436 -0.0073 21 1 -0.3634 0.5139 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0278 0.0005 24 1 7.5912 0.3405 0.5153 25 1 6.5519 -1.1045 0.5151 26 1 9.7533 -2.3109 -0.8478 27 1 7.1265 3.1320 1.0268 28 1 7.6448 2.4075 -0.5142 29 1 6.6078 3.8543 -0.5151 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095438815.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:24 Heat of formation + Delta-G solvation = -29.716395 kcal Electronic energy + Delta-G solvation = -16773.260837 eV Core-core repulsion = 13743.948980 eV Total energy + Delta-G solvation = -3029.311858 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 302.005 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.77187 -41.20213 -37.51483 -35.91223 -34.14024 -33.96173 -31.44005 -29.89665 -28.48953 -27.78001 -25.98726 -23.88810 -21.89080 -21.14037 -18.98950 -18.27959 -18.17977 -17.56666 -17.28783 -16.66896 -16.15302 -15.07861 -14.80460 -14.50086 -14.27845 -14.23925 -13.74509 -13.70234 -13.25009 -13.02432 -12.99239 -12.70067 -12.36208 -12.25882 -12.12976 -11.95005 -11.80413 -11.72949 -10.92622 -10.75224 -10.21407 -9.73594 -8.39325 -6.55237 0.16591 0.52472 0.83476 1.39216 1.40006 1.43051 1.52912 1.94449 1.96029 2.34237 2.94844 3.38471 3.60527 3.91769 4.14374 4.30719 4.36065 4.61342 4.69795 4.70277 4.79065 4.84829 4.97101 5.13670 5.20004 5.47008 5.68651 5.76516 6.48520 6.56723 6.92069 7.16382 8.69072 Molecular weight = 302.01amu Principal moments of inertia in cm(-1) A = 0.017324 B = 0.005606 C = 0.004592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.851722 B = 4993.037743 C = 6096.522812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.357 6.357 3 C 0.558 3.442 4 O -0.499 6.499 5 C -0.021 4.021 6 N -0.247 5.247 7 N -0.246 5.246 8 C 0.256 3.744 9 C -0.559 4.559 10 H 0.054 0.946 11 C 0.032 3.968 12 N -0.911 5.911 13 Si 0.969 3.031 14 H -0.264 1.264 15 H -0.276 1.276 16 H -0.276 1.276 17 C 0.060 3.940 18 C -0.088 4.088 19 C -0.182 4.182 20 Br 0.022 6.978 21 H 0.071 0.929 22 H 0.068 0.932 23 H 0.132 0.868 24 H 0.071 0.929 25 H 0.043 0.957 26 H 0.276 0.724 27 H 0.103 0.897 28 H 0.081 0.919 29 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.032 9.518 1.949 13.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.273 6.273 3 C 0.400 3.600 4 O -0.385 6.385 5 C -0.179 4.179 6 N -0.085 5.085 7 N -0.035 5.035 8 C 0.139 3.861 9 C -0.597 4.597 10 H 0.072 0.928 11 C -0.171 4.171 12 N -0.549 5.549 13 Si 0.793 3.207 14 H -0.189 1.189 15 H -0.201 1.201 16 H -0.201 1.201 17 C -0.067 4.067 18 C -0.145 4.145 19 C -0.272 4.272 20 Br 0.105 6.895 21 H 0.089 0.911 22 H 0.087 0.913 23 H 0.150 0.850 24 H 0.089 0.911 25 H 0.061 0.939 26 H 0.085 0.915 27 H 0.121 0.879 28 H 0.100 0.900 29 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -9.219 9.073 2.014 13.091 hybrid contribution 0.218 -0.155 -0.724 0.772 sum -9.002 8.918 1.289 12.737 Atomic orbital electron populations 1.23669 0.73595 1.05968 1.03161 1.86656 1.25785 1.31261 1.83594 1.19397 0.85828 0.82113 0.72656 1.90838 1.65329 1.35898 1.46437 1.20727 0.92016 0.90159 1.14982 1.73702 0.90901 1.26770 1.17098 1.46571 1.05557 1.05763 1.45580 1.19841 0.77655 0.89500 0.99108 1.21292 1.13462 1.33856 0.91121 0.92766 1.25612 0.95289 0.94156 1.01998 1.69970 1.18797 1.33209 1.32905 0.85384 0.78401 0.78203 0.78732 1.18878 1.20095 1.20125 1.21922 0.97149 0.84907 1.02770 1.20601 0.91254 0.97609 1.05082 1.21645 0.92977 0.92941 1.19667 1.96521 1.88507 1.06440 1.98040 0.91055 0.91289 0.85007 0.91114 0.93937 0.91511 0.87880 0.89970 0.87841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 10.56 113.37 1.20 1.82 15 2 O -0.36 -11.99 10.58 -56.49 -0.60 -12.59 15 3 C 0.56 20.89 7.96 70.28 0.56 21.45 15 4 O -0.50 -18.48 15.39 19.87 0.31 -18.18 15 5 C -0.02 -0.87 7.16 42.42 0.30 -0.57 15 6 N -0.25 -11.18 11.98 -48.22 -0.58 -11.76 15 7 N -0.25 -10.82 3.30 -337.80 -1.11 -11.93 15 8 C 0.26 12.16 5.66 85.63 0.48 12.65 15 9 C -0.56 -28.80 9.39 25.60 0.24 -28.56 15 10 H 0.05 2.89 7.81 -2.91 -0.02 2.87 15 11 C 0.03 1.62 5.46 84.65 0.46 2.08 15 12 N -0.91 -47.96 13.29 21.45 0.28 -47.68 15 13 Si 0.97 40.54 29.54 68.60 2.03 42.56 15 14 H -0.26 -10.50 7.11 99.48 0.71 -9.80 15 15 H -0.28 -11.23 7.11 99.48 0.71 -10.52 15 16 H -0.28 -11.74 7.11 99.48 0.71 -11.03 15 17 C 0.06 2.28 6.94 41.32 0.29 2.56 15 18 C -0.09 -2.55 9.71 71.24 0.69 -1.86 15 19 C -0.18 -6.87 6.67 22.44 0.15 -6.72 15 20 Br 0.02 0.66 32.28 -20.37 -0.66 0.01 15 21 H 0.07 1.43 8.14 -2.39 -0.02 1.41 15 22 H 0.07 1.42 8.14 -2.39 -0.02 1.40 15 23 H 0.13 2.01 8.14 -2.38 -0.02 1.99 15 24 H 0.07 3.24 7.58 -2.39 -0.02 3.22 15 25 H 0.04 2.18 8.14 -2.39 -0.02 2.16 15 26 H 0.28 13.61 8.31 -92.71 -0.77 12.84 15 27 H 0.10 2.50 8.14 -2.39 -0.02 2.48 15 28 H 0.08 2.58 7.68 -2.39 -0.02 2.56 15 29 H 0.10 2.55 7.90 -2.39 -0.02 2.53 15 Total: -1.00 -59.81 287.16 5.22 -54.59 By element: Atomic # 1 Polarization: 0.94 SS G_CDS: 1.18 Total: 2.12 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: 4.38 Total: 2.86 kcal Atomic # 7 Polarization: -69.96 SS G_CDS: -1.41 Total: -71.37 kcal Atomic # 8 Polarization: -30.47 SS G_CDS: -0.29 Total: -30.76 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 2.03 Total: 42.56 kcal Atomic # 35 Polarization: 0.66 SS G_CDS: -0.66 Total: 0.01 kcal Total: -59.81 5.22 -54.59 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095438815.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.872 kcal (2) G-P(sol) polarization free energy of solvation -59.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds