Wall clock time and date at job start Tue Mar 31 2020 03:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.24985 * 2 1 4 4 C 1.52722 * 109.24837 * 240.54178 * 2 1 3 5 5 C 1.53229 * 108.42865 * 290.92527 * 4 2 1 6 6 C 1.52721 * 108.36708 * 290.05157 * 5 4 2 7 7 C 1.52996 * 109.25475 * 290.83241 * 6 5 4 8 8 C 1.53005 * 109.22022 * 171.38801 * 6 5 4 9 9 C 1.50665 * 110.59847 * 51.12387 * 6 5 4 10 10 C 1.38638 * 117.61753 * 162.58667 * 9 6 5 11 11 C 1.39333 * 120.43076 * 179.42486 * 10 9 6 12 12 C 1.47729 * 120.26958 * 180.02562 * 11 10 9 13 13 O 1.21589 * 120.00231 * 359.97438 * 12 11 10 14 14 N 1.34780 * 119.99522 * 179.97438 * 12 11 10 15 15 C 1.36870 * 119.99841 * 180.02562 * 14 12 11 16 16 H 1.07996 * 120.00049 * 0.02562 * 15 14 12 17 17 C 1.39047 * 119.99977 * 180.02562 * 15 14 12 18 18 N 1.31365 * 120.00228 * 179.97438 * 17 15 14 19 19 Si 1.86804 * 120.00062 * 0.02562 * 17 15 14 20 20 H 1.48493 * 109.47119 * 90.00031 * 19 17 15 21 21 H 1.48497 * 109.47144 * 210.00018 * 19 17 15 22 22 H 1.48497 * 109.46781 * 329.99598 * 19 17 15 23 23 C 1.39670 * 119.44910 * 359.97438 * 11 10 9 24 24 C 1.37607 * 119.61501 * 0.11439 * 23 11 10 25 25 C 1.37848 * 122.55496 * 342.20635 * 9 6 5 26 26 H 1.09002 * 109.47153 * 59.99626 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.99817 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46872 * 60.00047 * 3 2 1 30 30 H 1.08997 * 109.47412 * 179.97438 * 3 2 1 31 31 H 1.08993 * 109.47175 * 300.00548 * 3 2 1 32 32 H 1.08999 * 109.67894 * 50.61800 * 4 2 1 33 33 H 1.09005 * 109.67823 * 171.17363 * 4 2 1 34 34 H 1.09003 * 109.69986 * 170.32841 * 5 4 2 35 35 H 1.09009 * 109.70936 * 49.78116 * 5 4 2 36 36 H 1.08995 * 109.47352 * 181.10840 * 7 6 5 37 37 H 1.08996 * 109.46647 * 301.11665 * 7 6 5 38 38 H 1.09001 * 109.46533 * 61.11230 * 7 6 5 39 39 H 1.08998 * 109.47000 * 298.90685 * 8 6 5 40 40 H 1.09001 * 109.46664 * 58.90977 * 8 6 5 41 41 H 1.08997 * 109.46957 * 178.90629 * 8 6 5 42 42 H 1.07998 * 119.77905 * 359.38731 * 10 9 6 43 43 H 0.97004 * 120.00179 * 359.97438 * 14 12 11 44 44 H 0.96997 * 120.00545 * 179.97438 * 18 17 15 45 45 H 1.08006 * 120.19151 * 180.14607 * 23 11 10 46 46 H 1.07994 * 119.62142 * 179.97438 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0344 1.4444 0.0000 4 6 2.0334 -0.7091 -1.2554 5 6 1.7030 -2.2004 -1.1349 6 6 2.5914 -2.8040 -0.0492 7 6 4.0408 -2.8272 -0.5385 8 6 2.1333 -4.2352 0.2386 9 6 2.5075 -1.9915 1.2168 10 6 2.9437 -2.5849 2.3914 11 6 2.9035 -1.8826 3.5941 12 6 3.3698 -2.5182 4.8435 13 8 3.7904 -3.6589 4.8251 14 7 3.3290 -1.8336 6.0037 15 6 3.7614 -2.4222 7.1612 16 1 4.1358 -3.4351 7.1448 17 6 3.7188 -1.7161 8.3583 18 7 4.1334 -2.2812 9.4694 19 14 3.0707 0.0357 8.3869 20 1 1.6064 0.0177 8.6328 21 1 3.7452 0.7955 9.4699 22 1 3.3454 0.6864 7.0806 23 6 2.4198 -0.5724 3.6084 24 6 1.9878 0.0057 2.4368 25 6 2.0268 -0.6998 1.2387 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6690 1.9568 0.8900 30 1 3.1243 1.4487 0.0005 31 1 1.6690 1.9568 -0.8899 32 1 1.5397 -0.2944 -2.1342 33 1 3.1120 -0.5779 -1.3435 34 1 1.8959 -2.6976 -2.0856 35 1 0.6548 -2.3238 -0.8622 36 1 4.6753 -3.2755 0.2260 37 1 4.1056 -3.4142 -1.4546 38 1 4.3740 -1.8083 -0.7356 39 1 1.1039 -4.2221 0.5967 40 1 2.1926 -4.8263 -0.6753 41 1 2.7770 -4.6767 0.9993 42 1 3.3165 -3.5984 2.3740 43 1 2.9938 -0.9234 6.0183 44 1 4.1041 -1.7885 10.3044 45 1 2.3856 -0.0162 4.5335 46 1 1.6134 1.0186 2.4478 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112045147.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:33 Heat of formation + Delta-G solvation = -53.322182 kcal Electronic energy + Delta-G solvation = -25257.224264 eV Core-core repulsion = 21916.674512 eV Total energy + Delta-G solvation = -3340.549751 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 301.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.94966 -40.35516 -37.56865 -36.96811 -36.18851 -33.94089 -31.51566 -31.08483 -30.11812 -28.36385 -27.84007 -27.30235 -24.67599 -24.38031 -23.76622 -21.63841 -20.87479 -20.50517 -19.07880 -18.00679 -17.28622 -16.59784 -16.41903 -16.10331 -15.71410 -15.44710 -15.38517 -14.89504 -14.82971 -14.71729 -14.57807 -14.37026 -13.94356 -13.82942 -13.30467 -13.21307 -13.06657 -13.01848 -12.70302 -12.67963 -12.55889 -12.53074 -12.47874 -12.06126 -12.00675 -11.96696 -11.83378 -11.64557 -11.22929 -11.09730 -10.92676 -10.61263 -10.39080 -9.74317 -9.55925 -8.53494 -6.11553 -0.04363 0.41641 1.22501 1.29820 1.37112 1.95353 2.13561 2.76108 2.79140 3.18854 3.54207 3.62737 3.79476 3.89761 3.98211 4.04540 4.18827 4.21800 4.33405 4.36794 4.41876 4.53877 4.62581 4.74688 4.81112 4.85650 4.90296 4.91859 4.96919 5.03556 5.06030 5.09682 5.11787 5.17181 5.20126 5.24195 5.25265 5.28951 5.38164 5.42106 5.47562 5.52479 5.62390 5.67910 5.75921 5.84527 6.01761 6.45760 6.72554 7.23132 7.79129 8.63457 Molecular weight = 301.18amu Principal moments of inertia in cm(-1) A = 0.020133 B = 0.004244 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.427816 B = 6596.065455 C = 7615.383702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.023 4.023 3 C -0.142 4.142 4 C -0.110 4.110 5 C -0.106 4.106 6 C -0.022 4.022 7 C -0.138 4.138 8 C -0.144 4.144 9 C -0.069 4.069 10 C -0.082 4.082 11 C -0.134 4.134 12 C 0.478 3.522 13 O -0.630 6.630 14 N -0.571 5.571 15 C -0.335 4.335 16 H 0.059 0.941 17 C -0.006 4.006 18 N -0.919 5.919 19 Si 0.956 3.044 20 H -0.250 1.250 21 H -0.263 1.263 22 H -0.236 1.236 23 C -0.110 4.110 24 C -0.117 4.117 25 C -0.047 4.047 26 H 0.079 0.921 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.050 0.950 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.067 0.933 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.035 0.965 37 H 0.079 0.921 38 H 0.062 0.938 39 H 0.051 0.949 40 H 0.079 0.921 41 H 0.039 0.961 42 H 0.111 0.889 43 H 0.389 0.611 44 H 0.284 0.716 45 H 0.127 0.873 46 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.036 11.521 -25.869 29.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.023 4.023 3 C -0.199 4.199 4 C -0.147 4.147 5 C -0.144 4.144 6 C -0.022 4.022 7 C -0.195 4.195 8 C -0.202 4.202 9 C -0.069 4.069 10 C -0.101 4.101 11 C -0.137 4.137 12 C 0.269 3.731 13 O -0.518 6.518 14 N -0.210 5.210 15 C -0.464 4.464 16 H 0.077 0.923 17 C -0.207 4.207 18 N -0.558 5.558 19 Si 0.775 3.225 20 H -0.174 1.174 21 H -0.187 1.187 22 H -0.159 1.159 23 C -0.129 4.129 24 C -0.134 4.134 25 C -0.048 4.048 26 H 0.098 0.902 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.096 0.904 32 H 0.108 0.892 33 H 0.085 0.915 34 H 0.104 0.896 35 H 0.088 0.912 36 H 0.055 0.945 37 H 0.098 0.902 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.098 0.902 41 H 0.058 0.942 42 H 0.129 0.871 43 H 0.226 0.774 44 H 0.094 0.906 45 H 0.145 0.855 46 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -8.707 10.772 -25.595 29.103 hybrid contribution 0.263 0.048 1.498 1.522 sum -8.444 10.820 -24.097 27.731 Atomic orbital electron populations 1.21950 0.92687 1.02094 1.02787 1.19527 0.96317 0.95301 0.91123 1.21981 1.00972 0.93845 1.03069 1.21713 1.01653 0.94589 0.96759 1.21680 0.99047 0.95910 0.97723 1.19475 0.97111 0.93997 0.91613 1.21943 0.93997 1.02414 1.01158 1.21991 1.00792 0.95359 1.02012 1.19704 0.98672 0.94425 0.94101 1.21257 0.97987 0.99516 0.91342 1.19877 1.04544 0.96276 0.92984 1.18598 0.83730 0.86424 0.84386 1.90575 1.53445 1.20741 1.87039 1.41935 1.57138 1.15092 1.06806 1.19085 1.41504 1.00360 0.85479 0.92252 1.26133 0.96622 1.04460 0.93486 1.69752 1.45774 1.40326 0.99992 0.85495 0.79955 0.76554 0.80478 1.17445 1.18750 1.15948 1.21357 0.98514 0.93170 0.99869 1.21387 1.00007 1.01139 0.90886 1.20057 0.96374 0.92574 0.95785 0.90249 0.92622 0.92936 0.91831 0.93102 0.90419 0.89172 0.91452 0.89556 0.91213 0.94539 0.90238 0.91884 0.92979 0.90186 0.94207 0.87122 0.77442 0.90578 0.85509 0.82610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 8.17 71.98 0.59 -1.26 16 2 C -0.02 -0.35 0.63 -53.02 -0.03 -0.38 16 3 C -0.14 -1.80 7.96 71.98 0.57 -1.23 16 4 C -0.11 -1.44 4.63 30.58 0.14 -1.29 16 5 C -0.11 -1.57 4.64 30.58 0.14 -1.43 16 6 C -0.02 -0.46 0.62 -53.03 -0.03 -0.49 16 7 C -0.14 -2.76 8.15 71.98 0.59 -2.17 16 8 C -0.14 -3.21 7.95 71.98 0.57 -2.64 16 9 C -0.07 -1.88 4.71 -19.87 -0.09 -1.98 16 10 C -0.08 -2.99 8.45 22.63 0.19 -2.80 16 11 C -0.13 -5.45 5.87 -20.16 -0.12 -5.56 16 12 C 0.48 25.20 7.72 86.75 0.67 25.87 16 13 O -0.63 -39.02 15.92 -4.00 -0.06 -39.09 16 14 N -0.57 -29.87 5.04 -309.73 -1.56 -31.43 16 15 C -0.34 -20.64 10.16 84.10 0.85 -19.78 16 16 H 0.06 4.30 7.38 -2.91 -0.02 4.27 16 17 C -0.01 -0.36 5.50 84.96 0.47 0.10 16 18 N -0.92 -55.73 13.95 21.68 0.30 -55.43 16 19 Si 0.96 39.45 27.74 68.60 1.90 41.36 16 20 H -0.25 -9.69 7.11 99.48 0.71 -8.99 16 21 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 22 H -0.24 -8.43 6.52 99.48 0.65 -7.79 16 23 C -0.11 -3.54 9.54 22.47 0.21 -3.33 16 24 C -0.12 -2.87 8.88 22.33 0.20 -2.67 16 25 C -0.05 -1.10 4.72 -19.75 -0.09 -1.19 16 26 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.05 0.77 8.06 -2.39 -0.02 0.75 16 28 H 0.05 0.79 6.45 -2.38 -0.02 0.77 16 29 H 0.06 0.77 6.36 -2.39 -0.02 0.75 16 30 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.09 0.80 8.12 -2.39 -0.02 0.78 16 33 H 0.07 0.94 6.25 -2.38 -0.01 0.93 16 34 H 0.09 0.97 8.12 -2.39 -0.02 0.95 16 35 H 0.07 1.05 6.25 -2.38 -0.01 1.04 16 36 H 0.04 0.89 8.06 -2.39 -0.02 0.87 16 37 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.06 1.18 6.47 -2.39 -0.02 1.17 16 39 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.04 1.07 6.40 -2.39 -0.02 1.06 16 42 H 0.11 4.46 5.90 -2.91 -0.02 4.45 16 43 H 0.39 17.15 3.81 -92.71 -0.35 16.80 16 44 H 0.28 15.57 8.31 -92.71 -0.77 14.80 16 45 H 0.13 3.78 6.43 -2.91 -0.02 3.76 16 46 H 0.16 2.78 6.30 -2.91 -0.02 2.76 16 Total: -1.00 -77.57 349.19 5.99 -71.58 By element: Atomic # 1 Polarization: 34.66 SS G_CDS: 0.58 Total: 35.23 kcal Atomic # 6 Polarization: -27.06 SS G_CDS: 4.83 Total: -22.24 kcal Atomic # 7 Polarization: -85.60 SS G_CDS: -1.26 Total: -86.85 kcal Atomic # 8 Polarization: -39.02 SS G_CDS: -0.06 Total: -39.09 kcal Atomic # 14 Polarization: 39.45 SS G_CDS: 1.90 Total: 41.36 kcal Total: -77.57 5.99 -71.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112045147.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.261 kcal (2) G-P(sol) polarization free energy of solvation -77.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds