Wall clock time and date at job start Tue Mar 31 2020 03:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46507 * 109.47137 * 2 1 4 4 C 1.46508 * 119.99386 * 270.00083 * 3 2 1 5 5 C 1.50697 * 109.46734 * 269.99564 * 4 3 2 6 6 H 1.07994 * 120.00663 * 0.02562 * 5 4 3 7 7 C 1.37886 * 119.99738 * 180.02562 * 5 4 3 8 8 N 1.31510 * 119.99666 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99912 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47299 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47260 * 120.00083 * 9 7 5 12 12 H 1.48506 * 109.46577 * 239.99938 * 9 7 5 13 13 C 1.34770 * 120.00436 * 89.99789 * 3 2 1 14 14 O 1.21281 * 119.99934 * 180.02562 * 13 3 2 15 15 C 1.50696 * 119.99923 * 0.02562 * 13 3 2 16 16 N 1.46900 * 109.47148 * 180.02562 * 15 13 3 17 17 C 1.48567 * 111.00034 * 285.41588 * 16 15 13 18 18 C 1.54374 * 104.59834 * 200.95936 * 17 16 15 19 19 H 1.08996 * 110.32350 * 264.95870 * 18 17 16 20 20 F 1.39903 * 110.32381 * 142.74641 * 18 17 16 21 21 C 1.54266 * 105.05582 * 23.85477 * 18 17 16 22 22 C 1.48566 * 111.00074 * 170.00195 * 16 15 13 23 23 H 1.08998 * 110.41149 * 40.25833 * 22 16 15 24 24 C 1.50705 * 110.40865 * 277.93513 * 22 16 15 25 25 N 1.34768 * 119.99780 * 180.02562 * 24 22 16 26 26 O 1.21280 * 119.99582 * 359.97438 * 24 22 16 27 27 H 1.09000 * 109.46769 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47406 * 300.00339 * 1 2 3 29 29 H 1.08994 * 109.47349 * 60.00313 * 1 2 3 30 30 H 1.09000 * 109.47406 * 239.99661 * 2 1 3 31 31 H 1.09005 * 109.47394 * 119.98982 * 2 1 3 32 32 H 1.08995 * 109.47200 * 29.99985 * 4 3 2 33 33 H 1.09001 * 109.46966 * 150.00029 * 4 3 2 34 34 H 0.97006 * 119.99822 * 180.02562 * 8 7 5 35 35 H 1.08997 * 109.47374 * 59.99730 * 15 13 3 36 36 H 1.09001 * 109.47520 * 299.99692 * 15 13 3 37 37 H 1.09004 * 110.40948 * 319.74003 * 17 16 15 38 38 H 1.08997 * 110.40880 * 82.18055 * 17 16 15 39 39 H 1.09004 * 110.32346 * 241.09906 * 21 18 17 40 40 H 1.09003 * 110.40795 * 118.94286 * 21 18 17 41 41 H 0.97004 * 120.00367 * 359.97438 * 25 24 22 42 42 H 0.97007 * 119.99888 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0718 -1.2689 5 6 3.6857 1.8350 -1.7038 6 1 4.3426 1.2303 -1.0962 7 6 4.1493 2.3904 -2.8776 8 7 3.3493 3.1263 -3.6178 9 14 5.9134 2.0963 -3.4172 10 1 6.6008 1.2404 -2.4171 11 1 5.9204 1.4180 -4.7382 12 1 6.6214 3.3973 -3.5248 13 6 2.2429 2.0167 1.1671 14 8 2.6468 3.1603 1.1670 15 6 1.9923 1.3062 2.4722 16 7 2.3098 2.2065 3.5887 17 6 3.7790 2.3524 3.7538 18 6 3.9609 2.8374 5.2081 19 1 4.0339 3.9244 5.2383 20 9 5.1005 2.2567 5.7750 21 6 2.6934 2.3647 5.9496 22 6 1.8524 1.6339 4.8810 23 1 2.0470 0.5619 4.9119 24 6 0.3846 1.9068 5.0867 25 7 -0.2319 1.4706 6.2028 26 8 -0.2414 2.5197 4.2480 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5137 -0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8934 -0.5137 0.8901 32 1 1.5816 1.6876 -2.0284 33 1 2.0955 3.1410 -1.1386 34 1 3.6753 3.5167 -4.4438 35 1 2.6228 0.4190 2.5298 36 1 0.9444 1.0117 2.5302 37 1 4.2750 1.3927 3.6083 38 1 4.1684 3.0925 3.0548 39 1 2.1444 3.2198 6.3439 40 1 2.9577 1.6808 6.7562 41 1 0.2690 0.9807 6.8737 42 1 -1.1766 1.6466 6.3354 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285463990.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:27 Heat of formation + Delta-G solvation = -108.749232 kcal Electronic energy + Delta-G solvation = -25714.450681 eV Core-core repulsion = 21837.187864 eV Total energy + Delta-G solvation = -3877.262817 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 301.159 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -47.79342 -40.30030 -38.91354 -37.42303 -35.14389 -33.92697 -32.82663 -31.85869 -30.02039 -29.32698 -27.79738 -25.87546 -23.39835 -22.94271 -22.24904 -21.34618 -20.26130 -18.32309 -17.91413 -17.17019 -16.51317 -16.43458 -16.21080 -16.03228 -15.32911 -15.22975 -15.04364 -14.37019 -14.21195 -14.03567 -13.69642 -13.47723 -13.30875 -13.18430 -12.71785 -12.42527 -12.22710 -12.16465 -11.90189 -11.67059 -11.32934 -11.14284 -11.02585 -10.85079 -10.80869 -10.64349 -10.49624 -10.08374 -10.02236 -9.87502 -9.56536 -8.94600 -8.40408 -8.39690 -7.57314 -6.00029 -4.04635 2.47651 3.05966 3.31789 3.39140 3.42405 3.53331 3.61751 4.07664 4.14465 4.17511 4.47054 4.56667 4.59060 4.82729 4.89071 5.10852 5.14128 5.22505 5.33735 5.34432 5.37744 5.49616 5.52930 5.69756 5.82292 5.89378 5.98942 6.07346 6.28206 6.50437 6.54560 6.62999 6.71547 7.11547 7.17292 7.53145 7.63182 7.97162 8.12644 8.28956 8.51224 8.96050 9.21082 9.60438 11.07986 Molecular weight = 301.16amu Principal moments of inertia in cm(-1) A = 0.016306 B = 0.004369 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.700610 B = 6406.823751 C = 7582.207634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.108 3.892 3 N -0.600 5.600 4 C 0.248 3.752 5 C -0.524 4.524 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.512 3.488 14 O -0.521 6.521 15 C 0.028 3.972 16 N -0.460 5.460 17 C 0.011 3.989 18 C 0.087 3.913 19 H 0.104 0.896 20 F -0.209 7.209 21 C -0.137 4.137 22 C 0.037 3.963 23 H 0.082 0.918 24 C 0.523 3.477 25 N -0.860 5.860 26 O -0.508 6.508 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.082 0.918 31 H 0.059 0.941 32 H 0.031 0.969 33 H 0.044 0.956 34 H 0.262 0.738 35 H 0.061 0.939 36 H 0.101 0.899 37 H 0.059 0.941 38 H 0.115 0.885 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.399 0.601 42 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.852 -8.493 21.513 23.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.017 4.017 3 N -0.333 5.333 4 C 0.129 3.871 5 C -0.563 4.563 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.298 3.702 14 O -0.397 6.397 15 C -0.103 4.103 16 N -0.184 5.184 17 C -0.117 4.117 18 C 0.050 3.950 19 H 0.122 0.878 20 F -0.190 7.190 21 C -0.176 4.176 22 C -0.075 4.075 23 H 0.099 0.901 24 C 0.306 3.694 25 N -0.425 5.425 26 O -0.380 6.380 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.101 0.899 31 H 0.078 0.922 32 H 0.049 0.951 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.119 0.881 37 H 0.077 0.923 38 H 0.134 0.866 39 H 0.110 0.890 40 H 0.111 0.889 41 H 0.227 0.773 42 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -5.120 -6.841 20.509 22.218 hybrid contribution 1.147 -1.336 0.148 1.767 sum -3.973 -8.177 20.657 22.569 Atomic orbital electron populations 1.22232 0.96806 1.01251 1.02575 1.21391 0.93543 0.84387 1.02359 1.48228 1.64290 1.13154 1.07642 1.19249 0.96116 0.93728 0.78043 1.21472 0.96949 1.31681 1.06183 0.92531 1.24936 0.97759 0.94985 0.96444 1.69949 1.35534 1.33531 1.14312 0.86464 0.84767 0.78023 0.78268 1.19873 1.21017 1.20894 1.19880 0.78917 0.87031 0.84414 1.90655 1.44803 1.17462 1.86769 1.22314 1.02824 0.93926 0.91264 1.64861 1.10711 1.43244 0.99611 1.23854 0.88837 1.02904 0.96096 1.22278 0.81299 0.98970 0.92409 0.87840 1.92828 1.53227 1.86657 1.86267 1.22881 0.95698 1.01768 0.97209 1.22645 0.92821 0.99228 0.92800 0.90071 1.20259 0.88940 0.78666 0.81550 1.43853 1.14563 1.61187 1.22937 1.90826 1.66346 1.38095 1.42727 0.92322 0.92956 0.91932 0.89946 0.92214 0.95093 0.93842 0.92818 0.92155 0.88074 0.92276 0.86638 0.89014 0.88876 0.77345 0.76705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.45 10.24 37.16 0.38 -2.07 16 2 C 0.11 1.78 5.93 -4.04 -0.02 1.76 16 3 N -0.60 -13.09 2.46 -175.05 -0.43 -13.52 16 4 C 0.25 6.64 5.16 -5.19 -0.03 6.61 16 5 C -0.52 -15.02 9.39 -34.44 -0.32 -15.35 16 6 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.99 13.29 55.43 0.74 -26.25 16 9 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16 10 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 13 C 0.51 11.13 7.52 -10.99 -0.08 11.05 16 14 O -0.52 -13.57 14.80 5.56 0.08 -13.48 16 15 C 0.03 0.45 3.68 -4.98 -0.02 0.43 16 16 N -0.46 -7.00 4.24 -224.93 -0.95 -7.95 16 17 C 0.01 0.16 5.72 -2.18 -0.01 0.15 16 18 C 0.09 0.96 4.85 -25.35 -0.12 0.84 16 19 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 20 F -0.21 -2.48 17.10 2.25 0.04 -2.44 16 21 C -0.14 -1.17 6.37 -25.35 -0.16 -1.33 16 22 C 0.04 0.40 2.67 -67.22 -0.18 0.22 16 23 H 0.08 0.68 8.00 -51.93 -0.42 0.26 16 24 C 0.52 5.96 7.05 -10.99 -0.08 5.89 16 25 N -0.86 -5.42 8.86 31.22 0.28 -5.14 16 26 O -0.51 -8.60 16.73 5.56 0.09 -8.51 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.76 7.22 -51.93 -0.38 0.39 16 29 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.08 1.40 8.07 -51.93 -0.42 0.98 16 31 H 0.06 0.81 6.44 -51.93 -0.33 0.48 16 32 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 33 H 0.04 1.33 7.42 -51.93 -0.39 0.94 16 34 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.06 0.83 7.03 -51.93 -0.36 0.46 16 36 H 0.10 1.56 6.43 -51.93 -0.33 1.22 16 37 H 0.06 0.80 7.73 -51.93 -0.40 0.39 16 38 H 0.12 1.97 7.24 -51.93 -0.38 1.60 16 39 H 0.09 0.74 7.86 -51.93 -0.41 0.33 16 40 H 0.09 0.55 8.05 -51.93 -0.42 0.14 16 41 H 0.40 1.19 8.83 -40.82 -0.36 0.83 16 42 H 0.40 2.23 8.93 -40.82 -0.36 1.86 16 LS Contribution 350.22 15.07 5.28 5.28 Total: -1.00 -37.42 350.22 -6.83 -44.25 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -6.19 Total: 0.88 kcal Atomic # 6 Polarization: 10.59 SS G_CDS: -0.75 Total: 9.84 kcal Atomic # 7 Polarization: -52.50 SS G_CDS: -0.37 Total: -52.87 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: 0.18 Total: -22.00 kcal Atomic # 9 Polarization: -2.48 SS G_CDS: 0.04 Total: -2.44 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -37.42 -6.83 -44.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285463990.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.497 kcal (2) G-P(sol) polarization free energy of solvation -37.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds