Wall clock time and date at job start Tue Mar 31 2020 04:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47288 * 232.40167 * 3 2 1 5 5 C 1.37095 * 120.00035 * 95.81456 * 4 3 2 6 6 H 1.07994 * 120.00016 * 161.99801 * 5 4 3 7 7 C 1.38958 * 119.99959 * 342.00684 * 5 4 3 8 8 N 1.31411 * 119.99835 * 337.66371 * 7 5 4 9 9 Si 1.86800 * 119.99887 * 157.66627 * 7 5 4 10 10 H 1.48504 * 109.47107 * 89.99756 * 9 7 5 11 11 H 1.48497 * 109.46700 * 209.99464 * 9 7 5 12 12 H 1.48500 * 109.46990 * 329.99792 * 9 7 5 13 13 C 1.34772 * 119.99811 * 275.54217 * 4 3 2 14 14 O 1.21288 * 120.00258 * 180.27704 * 13 4 3 15 15 C 1.50706 * 120.00179 * 0.27590 * 13 4 3 16 16 C 1.50699 * 109.47081 * 180.02562 * 15 13 4 17 17 C 1.38253 * 119.94536 * 269.72294 * 16 15 13 18 18 C 1.38189 * 120.11466 * 179.77839 * 17 16 15 19 19 C 1.38701 * 120.07017 * 0.56252 * 18 17 16 20 20 C 1.38980 * 119.81717 * 359.62414 * 19 18 17 21 21 C 1.38195 * 119.94399 * 89.99844 * 16 15 13 22 22 O 1.36097 * 120.78501 * 180.26315 * 20 19 18 23 23 C 1.43176 * 116.71808 * 342.81768 * 22 20 19 24 24 C 1.53474 * 108.25102 * 46.15992 * 23 22 20 25 25 O 1.36103 * 119.39866 * 179.53527 * 19 18 17 26 26 H 1.09008 * 109.46905 * 112.39805 * 3 2 1 27 27 H 1.09000 * 109.47261 * 352.40625 * 3 2 1 28 28 H 0.96994 * 119.99917 * 180.02562 * 8 7 5 29 29 H 1.09004 * 109.46715 * 299.99498 * 15 13 4 30 30 H 1.08993 * 109.47194 * 60.00058 * 15 13 4 31 31 H 1.08008 * 119.93958 * 0.03319 * 17 16 15 32 32 H 1.08001 * 119.96759 * 180.29603 * 18 17 16 33 33 H 1.07998 * 119.96965 * 359.97438 * 21 16 15 34 34 H 1.09000 * 109.70896 * 165.85118 * 23 22 20 35 35 H 1.09001 * 109.70637 * 286.47524 * 23 22 20 36 36 H 1.09007 * 109.70600 * 59.94746 * 24 23 22 37 37 H 1.08993 * 109.71443 * 180.57937 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0960 0.8436 1.0943 5 6 3.4382 0.2777 2.2953 6 1 4.0580 0.8226 2.9918 7 6 2.9876 -0.9970 2.6162 8 7 1.9203 -1.4849 2.0247 9 14 3.8989 -2.0169 3.8884 10 1 3.3342 -1.7480 5.2353 11 1 3.7478 -3.4589 3.5673 12 1 5.3389 -1.6547 3.8741 13 6 3.2137 2.1746 0.9187 14 8 3.6225 2.8719 1.8230 15 6 2.8375 2.7967 -0.4015 16 6 3.0609 4.2856 -0.3369 17 6 2.0392 5.1194 0.0782 18 6 2.2416 6.4848 0.1431 19 6 3.4671 7.0237 -0.2195 20 6 4.4930 6.1860 -0.6405 21 6 4.2848 4.8159 -0.6983 22 8 5.7050 6.6931 -0.9958 23 6 5.7578 8.0954 -1.2799 24 6 5.0016 8.8394 -0.1708 25 8 3.6484 8.3713 -0.1594 26 1 2.9711 0.3924 -0.9502 27 1 2.9718 -1.0178 0.1358 28 1 1.6056 -2.3745 2.2489 29 1 3.4548 2.3710 -1.1927 30 1 1.7872 2.5952 -0.6118 31 1 1.0824 4.7023 0.3563 32 1 1.4433 7.1335 0.4723 33 1 5.0800 4.1628 -1.0262 34 1 6.7959 8.4270 -1.3031 35 1 5.2864 8.2934 -2.2426 36 1 5.4690 8.6362 0.7928 37 1 5.0182 9.9109 -0.3695 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345459049.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:06:40 Heat of formation + Delta-G solvation = -38.637027 kcal Electronic energy + Delta-G solvation = -23918.899793 eV Core-core repulsion = 20241.894737 eV Total energy + Delta-G solvation = -3677.005055 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 302.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.15245 -39.08711 -37.54955 -37.18599 -35.72452 -34.32585 -32.33295 -31.68727 -30.76136 -29.31129 -27.52939 -26.88895 -24.86635 -24.04740 -22.50472 -20.67150 -19.25195 -18.42719 -17.90767 -17.17923 -17.01242 -16.48774 -16.22779 -15.36778 -15.06398 -14.67785 -14.46072 -14.37904 -14.34459 -13.86909 -13.70173 -13.41706 -13.06656 -12.97399 -12.61605 -12.12447 -11.86433 -11.73154 -11.53872 -11.39772 -11.25975 -11.11176 -11.06402 -10.81964 -10.59215 -10.42503 -10.39580 -10.27607 -9.24603 -8.65198 -8.36720 -8.03173 -7.80871 -6.50254 -3.98307 1.48957 1.54173 3.04682 3.10790 3.21907 3.23170 3.27949 3.55720 3.78448 3.89501 3.97154 4.14588 4.16200 4.67153 4.73203 4.76038 4.83783 4.91768 5.06367 5.11785 5.20380 5.30817 5.35945 5.53459 5.58876 5.70018 5.76405 5.90507 6.09169 6.16612 6.30053 6.34937 6.48697 6.78676 6.86872 6.96575 7.48117 7.51682 7.91391 8.29325 8.73030 9.01640 9.20575 9.75341 10.56082 Molecular weight = 302.11amu Principal moments of inertia in cm(-1) A = 0.023566 B = 0.003589 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.888118 B = 7799.427228 C = 8380.070761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C 0.245 3.755 3 C 0.220 3.780 4 N -0.445 5.445 5 C -0.314 4.314 6 H 0.108 0.892 7 C 0.032 3.968 8 N -0.876 5.876 9 Si 0.924 3.076 10 H -0.278 1.278 11 H -0.282 1.282 12 H -0.268 1.268 13 C 0.459 3.541 14 O -0.563 6.563 15 C -0.100 4.100 16 C -0.039 4.039 17 C -0.100 4.100 18 C -0.111 4.111 19 C 0.038 3.962 20 C 0.049 3.951 21 C -0.098 4.098 22 O -0.308 6.308 23 C 0.022 3.978 24 C 0.021 3.979 25 O -0.311 6.311 26 H 0.085 0.915 27 H 0.126 0.874 28 H 0.273 0.727 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.130 0.870 32 H 0.131 0.869 33 H 0.133 0.867 34 H 0.118 0.882 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.548 13.187 -9.511 17.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.152 5.152 2 C -0.073 4.073 3 C 0.093 3.907 4 N -0.166 5.166 5 C -0.440 4.440 6 H 0.125 0.875 7 C -0.171 4.171 8 N -0.515 5.515 9 Si 0.751 3.249 10 H -0.204 1.204 11 H -0.208 1.208 12 H -0.192 1.192 13 C 0.247 3.753 14 O -0.444 6.444 15 C -0.140 4.140 16 C -0.040 4.040 17 C -0.118 4.118 18 C -0.130 4.130 19 C -0.006 4.006 20 C 0.004 3.996 21 C -0.117 4.117 22 O -0.223 6.223 23 C -0.054 4.054 24 C -0.055 4.055 25 O -0.226 6.226 26 H 0.103 0.897 27 H 0.144 0.856 28 H 0.083 0.917 29 H 0.112 0.888 30 H 0.110 0.890 31 H 0.148 0.852 32 H 0.149 0.851 33 H 0.151 0.849 34 H 0.136 0.864 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 5.022 13.397 -9.034 16.921 hybrid contribution 0.777 -0.577 0.763 1.232 sum 5.799 12.820 -8.271 16.321 Atomic orbital electron populations 1.80899 1.13604 1.10144 1.10565 1.29330 0.95386 0.91627 0.91003 1.18739 0.81629 1.00056 0.90318 1.43632 1.56924 1.04104 1.11905 1.19683 1.29777 0.98922 0.95658 0.87459 1.25252 0.94979 0.98247 0.98639 1.69867 1.19178 1.18473 1.44013 0.85959 0.80163 0.78510 0.80300 1.20441 1.20770 1.19250 1.19962 0.84054 0.82076 0.89173 1.90578 1.49416 1.60394 1.44042 1.20700 1.03386 0.91593 0.98366 1.19110 0.92670 0.94565 0.97626 1.20793 0.99621 0.91920 0.99458 1.20314 0.95387 0.95050 1.02235 1.18799 0.95692 0.82410 1.03724 1.18757 0.85365 0.93247 1.02216 1.20208 0.97411 0.91377 1.02710 1.86306 1.27773 1.23964 1.84241 1.23563 1.03242 0.80411 0.98203 1.23576 0.82120 1.00129 0.99700 1.86273 1.27144 1.18969 1.90218 0.89701 0.85616 0.91671 0.88781 0.89049 0.85236 0.85101 0.84928 0.86423 0.90774 0.90610 0.86468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.94 18.54 42.15 0.78 -10.16 16 2 C 0.24 5.24 12.95 -20.76 -0.27 4.97 16 3 C 0.22 4.19 4.91 -6.83 -0.03 4.16 16 4 N -0.44 -10.12 2.60 -117.93 -0.31 -10.43 16 5 C -0.31 -7.99 9.31 -14.93 -0.14 -8.13 16 6 H 0.11 2.91 7.40 -52.49 -0.39 2.52 16 7 C 0.03 0.79 4.84 -17.46 -0.08 0.71 16 8 N -0.88 -21.88 9.55 55.50 0.53 -21.35 16 9 Si 0.92 19.50 29.61 -169.99 -5.03 14.47 16 10 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 11 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 12 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 13 C 0.46 10.16 7.56 -10.98 -0.08 10.07 16 14 O -0.56 -14.66 15.68 5.55 0.09 -14.57 16 15 C -0.10 -1.68 4.44 -29.03 -0.13 -1.81 16 16 C -0.04 -0.66 4.37 -104.63 -0.46 -1.11 16 17 C -0.10 -1.61 9.69 -39.59 -0.38 -2.00 16 18 C -0.11 -1.69 9.96 -39.43 -0.39 -2.09 16 19 C 0.04 0.59 6.49 -39.14 -0.25 0.33 16 20 C 0.05 0.77 6.49 -39.13 -0.25 0.51 16 21 C -0.10 -1.60 9.61 -39.42 -0.38 -1.98 16 22 O -0.31 -4.31 10.42 -32.83 -0.34 -4.66 16 23 C 0.02 0.20 7.26 37.40 0.27 0.47 16 24 C 0.02 0.19 7.26 37.40 0.27 0.47 16 25 O -0.31 -4.22 10.42 -32.85 -0.34 -4.57 16 26 H 0.09 1.19 6.67 -51.92 -0.35 0.84 16 27 H 0.13 2.46 6.51 -51.93 -0.34 2.12 16 28 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 29 H 0.09 1.26 7.35 -51.93 -0.38 0.88 16 30 H 0.09 1.46 7.46 -51.93 -0.39 1.07 16 31 H 0.13 1.98 8.06 -52.48 -0.42 1.55 16 32 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 33 H 0.13 1.98 8.06 -52.49 -0.42 1.55 16 34 H 0.12 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.12 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 323.72 15.07 4.88 4.88 Total: -1.00 -32.91 323.72 -6.00 -38.91 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -3.94 Total: 2.88 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: -2.32 Total: 4.58 kcal Atomic # 7 Polarization: -42.94 SS G_CDS: 1.01 Total: -41.93 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: -0.60 Total: -23.80 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.03 Total: 14.47 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.91 -6.00 -38.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345459049.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.275 kcal (2) G-P(sol) polarization free energy of solvation -32.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds