Wall clock time and date at job start Tue Mar 31 2020 03:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.28713 * 126.02733 * 2 1 4 4 N 1.28506 * 110.67365 * 180.02562 * 3 2 1 5 5 C 1.33389 * 109.45653 * 359.73022 * 4 3 2 6 6 Br 1.89097 * 126.83078 * 180.29567 * 5 4 3 7 7 C 1.37128 * 126.03732 * 180.02562 * 2 1 3 8 8 C 1.47118 * 127.20846 * 359.97438 * 7 2 1 9 9 O 1.21634 * 120.00061 * 92.87150 * 8 7 2 10 10 N 1.34776 * 120.00171 * 272.87659 * 8 7 2 11 11 C 1.46499 * 120.00531 * 185.28105 * 10 8 7 12 12 C 1.52996 * 109.47240 * 179.97438 * 11 10 8 13 13 C 1.50698 * 109.46910 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00524 * 0.02562 * 13 12 11 15 15 C 1.37887 * 120.00011 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99667 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99884 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46924 * 90.00218 * 17 15 13 19 19 H 1.48499 * 109.46837 * 209.99692 * 17 15 13 20 20 H 1.48492 * 109.47243 * 329.99835 * 17 15 13 21 21 H 1.09000 * 109.46898 * 274.78302 * 1 2 3 22 22 H 1.08998 * 109.47673 * 34.79015 * 1 2 3 23 23 H 1.09005 * 109.46482 * 154.78962 * 1 2 3 24 24 H 0.97007 * 119.99322 * 5.28328 * 10 8 7 25 25 H 1.09003 * 109.46725 * 300.00065 * 11 10 8 26 26 H 1.09002 * 109.46646 * 59.99678 * 11 10 8 27 27 H 1.08995 * 109.47486 * 300.00057 * 12 11 10 28 28 H 1.09002 * 109.47496 * 60.00281 * 12 11 10 29 29 H 0.96997 * 119.99819 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2221 1.0409 0.0000 4 7 3.4613 0.7007 -0.0005 5 6 3.5567 -0.6298 0.0050 6 35 5.1475 -1.6521 0.0146 7 6 2.2718 -1.1089 -0.0005 8 6 1.8477 -2.5176 -0.0006 9 8 1.7225 -3.1150 -1.0527 10 7 1.5977 -3.1462 1.1651 11 6 1.2883 -4.5782 1.1736 12 6 1.0483 -5.0395 2.6124 13 6 0.7294 -6.5124 2.6210 14 1 0.7011 -7.0643 1.6931 15 6 0.4746 -7.1557 3.8137 16 7 0.5094 -6.4837 4.9437 17 14 0.0800 -8.9815 3.8244 18 1 1.3380 -9.7590 3.9599 19 1 -0.8166 -9.2874 4.9679 20 1 -0.5950 -9.3495 2.5539 21 1 -0.3633 0.0857 1.0241 22 1 -0.3634 0.8439 -0.5863 23 1 -0.3632 -0.9299 -0.4378 24 1 1.6227 -2.6504 1.9985 25 1 0.3929 -4.7598 0.5791 26 1 2.1250 -5.1331 0.7492 27 1 1.9438 -4.8579 3.2065 28 1 0.2118 -4.4846 3.0372 29 1 0.3306 -6.9363 5.7827 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379773093.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:36:44 Heat of formation + Delta-G solvation = 35.642473 kcal Electronic energy + Delta-G solvation = -16431.098556 eV Core-core repulsion = 13436.913622 eV Total energy + Delta-G solvation = -2994.184933 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 302.012 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -44.64778 -40.76491 -36.74850 -36.09697 -34.90220 -33.76041 -31.96296 -31.00188 -29.17491 -27.10054 -24.95330 -23.55756 -22.87703 -21.80474 -19.41840 -18.54705 -18.16802 -17.84158 -16.90861 -16.61242 -16.47219 -15.62722 -15.25376 -14.70390 -14.56978 -14.30390 -14.01972 -13.51919 -13.23618 -12.95141 -12.78116 -12.62227 -12.53966 -12.26490 -11.87700 -11.61333 -11.51698 -11.35172 -11.26205 -10.59855 -10.48822 -10.23716 -8.22195 -6.31747 -0.21821 -0.13159 0.70718 0.79876 1.26424 1.44112 1.45226 1.55438 1.91783 2.43312 3.11448 3.13811 3.33538 3.43811 3.91470 4.14799 4.35998 4.43310 4.47249 4.50023 4.85961 5.02826 5.04542 5.46705 5.59799 5.79313 6.14860 6.23671 6.76905 6.84271 6.84889 7.37740 8.89397 Molecular weight = 302.01amu Principal moments of inertia in cm(-1) A = 0.020915 B = 0.004134 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.411988 B = 6771.715773 C = 7554.097271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.250 5.250 3 N -0.053 5.053 4 N -0.260 5.260 5 C 0.002 3.998 6 Br 0.064 6.936 7 C -0.024 4.024 8 C 0.595 3.405 9 O -0.542 6.542 10 N -0.689 5.689 11 C 0.139 3.861 12 C 0.021 3.979 13 C -0.543 4.543 14 H 0.063 0.937 15 C 0.009 3.991 16 N -0.926 5.926 17 Si 0.960 3.040 18 H -0.275 1.275 19 H -0.283 1.283 20 H -0.264 1.264 21 H 0.128 0.872 22 H 0.139 0.861 23 H 0.108 0.892 24 H 0.412 0.588 25 H 0.065 0.935 26 H 0.059 0.941 27 H 0.009 0.991 28 H 0.013 0.987 29 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.765 13.333 -8.547 16.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.047 5.047 3 N -0.034 5.034 4 N -0.125 5.125 5 C -0.218 4.218 6 Br 0.146 6.854 7 C -0.163 4.163 8 C 0.376 3.624 9 O -0.418 6.418 10 N -0.339 5.339 11 C 0.017 3.983 12 C -0.017 4.017 13 C -0.581 4.581 14 H 0.081 0.919 15 C -0.190 4.190 16 N -0.566 5.566 17 Si 0.785 3.215 18 H -0.201 1.201 19 H -0.209 1.209 20 H -0.188 1.188 21 H 0.146 0.854 22 H 0.157 0.843 23 H 0.126 0.874 24 H 0.249 0.751 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.027 0.973 28 H 0.031 0.969 29 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.188 14.045 -9.108 17.040 hybrid contribution -0.505 -1.493 0.681 1.717 sum 2.684 12.552 -8.426 15.354 Atomic orbital electron populations 1.23083 0.68250 1.08216 1.08391 1.48090 1.11174 1.02019 1.43381 1.78175 0.95753 1.11432 1.18048 1.74954 1.10301 1.10189 1.17074 1.23752 0.93386 0.92988 1.11629 1.96834 1.25665 1.65223 1.97708 1.21853 0.90907 0.90848 1.12714 1.16655 0.77921 0.83176 0.84635 1.90865 1.52165 1.66754 1.32060 1.46103 1.67737 1.11668 1.08368 1.21489 1.00117 0.77265 0.99445 1.19156 0.96448 0.95662 0.90405 1.21454 1.48075 0.95129 0.93454 0.91894 1.25813 0.95067 1.02904 0.95239 1.70049 1.50115 1.37998 0.98405 0.85513 0.78248 0.79740 0.77975 1.20064 1.20892 1.18844 0.85359 0.84319 0.87388 0.75147 0.91704 0.92280 0.97275 0.96869 0.92659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.69 11.30 127.77 1.44 2.14 15 2 N -0.25 -5.57 3.80 -356.70 -1.35 -6.93 15 3 N -0.05 -1.37 13.14 37.02 0.49 -0.89 15 4 N -0.26 -7.64 12.35 -53.39 -0.66 -8.30 15 5 C 0.00 0.05 7.79 84.20 0.66 0.71 15 6 Br 0.06 1.71 33.94 -20.37 -0.69 1.02 15 7 C -0.02 -0.66 6.74 40.39 0.27 -0.39 15 8 C 0.60 18.25 6.96 86.57 0.60 18.85 15 9 O -0.54 -20.03 17.12 -4.14 -0.07 -20.10 15 10 N -0.69 -20.97 5.55 -466.68 -2.59 -23.56 15 11 C 0.14 5.19 5.62 86.38 0.49 5.68 15 12 C 0.02 0.95 5.09 29.85 0.15 1.10 15 13 C -0.54 -28.21 9.11 25.60 0.23 -27.98 15 14 H 0.06 3.17 7.74 -2.91 -0.02 3.15 15 15 C 0.01 0.46 5.46 84.66 0.46 0.93 15 16 N -0.93 -52.08 13.29 21.45 0.28 -51.80 15 17 Si 0.96 41.71 29.54 68.60 2.03 43.74 15 18 H -0.27 -11.71 7.11 99.48 0.71 -11.00 15 19 H -0.28 -12.11 7.11 99.48 0.71 -11.40 15 20 H -0.26 -11.04 7.11 99.48 0.71 -10.33 15 21 H 0.13 0.97 8.14 -2.39 -0.02 0.95 15 22 H 0.14 0.91 8.14 -2.39 -0.02 0.89 15 23 H 0.11 1.31 7.76 -2.38 -0.02 1.29 15 24 H 0.41 11.07 8.46 -92.70 -0.78 10.28 15 25 H 0.06 2.43 8.14 -2.39 -0.02 2.41 15 26 H 0.06 2.29 8.14 -2.39 -0.02 2.27 15 27 H 0.01 0.44 8.14 -2.39 -0.02 0.42 15 28 H 0.01 0.62 8.14 -2.39 -0.02 0.60 15 29 H 0.26 14.10 8.31 -92.71 -0.77 13.33 15 Total: -1.00 -65.07 289.22 2.15 -62.92 By element: Atomic # 1 Polarization: 2.45 SS G_CDS: 0.41 Total: 2.85 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: 4.31 Total: 1.03 kcal Atomic # 7 Polarization: -87.63 SS G_CDS: -3.83 Total: -91.46 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -0.07 Total: -20.10 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Atomic # 35 Polarization: 1.71 SS G_CDS: -0.69 Total: 1.02 kcal Total: -65.07 2.15 -62.92 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379773093.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.562 kcal (2) G-P(sol) polarization free energy of solvation -65.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds