Wall clock time and date at job start Tue Mar 31 2020 03:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.41389 * 126.79979 * 2 1 4 4 C 1.35451 * 103.98714 * 180.02562 * 3 2 1 5 5 C 1.50697 * 126.77537 * 179.97438 * 4 3 2 6 6 S 1.81401 * 109.47108 * 90.00211 * 5 4 3 7 7 O 1.42108 * 110.54209 * 68.37154 * 6 5 4 8 8 O 1.42099 * 110.54139 * 291.62257 * 6 5 4 9 9 N 1.65596 * 104.44796 * 179.97438 * 6 5 4 10 10 C 1.47580 * 134.49264 * 90.00430 * 9 6 5 11 11 C 1.53946 * 86.11983 * 155.35440 * 10 9 6 12 12 O 1.42904 * 113.73900 * 269.15677 * 11 10 9 13 13 C 1.50694 * 113.74528 * 137.94828 * 11 10 9 14 14 H 1.08003 * 120.00664 * 256.77090 * 13 11 10 15 15 C 1.37884 * 119.99828 * 77.04212 * 13 11 10 16 16 N 1.31511 * 119.99863 * 185.84088 * 15 13 11 17 17 Si 1.86797 * 119.99761 * 5.83622 * 15 13 11 18 18 H 1.48496 * 109.47234 * 84.67480 * 17 15 13 19 19 H 1.48506 * 109.47019 * 204.67158 * 17 15 13 20 20 H 1.48505 * 109.47283 * 324.66817 * 17 15 13 21 21 C 1.47810 * 134.45679 * 269.86449 * 9 6 5 22 22 O 1.34048 * 106.44426 * 0.24148 * 4 3 2 23 23 N 1.20920 * 111.56705 * 359.56657 * 22 4 3 24 24 H 1.09001 * 109.47306 * 90.00418 * 1 2 3 25 25 H 1.09004 * 109.46694 * 209.99544 * 1 2 3 26 26 H 1.08993 * 109.47548 * 329.99637 * 1 2 3 27 27 H 1.07996 * 128.00277 * 0.04063 * 3 2 1 28 28 H 1.08993 * 109.47414 * 329.99665 * 5 4 3 29 29 H 1.09002 * 109.46617 * 210.00195 * 5 4 3 30 30 H 1.09003 * 113.76823 * 41.05100 * 10 9 6 31 31 H 1.08999 * 113.76491 * 269.65392 * 10 9 6 32 32 H 0.96705 * 113.99471 * 172.51467 * 12 11 10 33 33 H 0.97002 * 119.99856 * 180.02562 * 16 15 13 34 34 H 1.09000 * 113.76976 * 90.38160 * 21 9 6 35 35 H 1.09007 * 113.83838 * 318.92125 * 21 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3539 1.1322 0.0000 4 6 3.6024 0.6070 -0.0006 5 6 4.9021 1.3698 -0.0014 6 16 5.4245 1.6761 1.7086 7 8 5.7956 0.4594 2.3421 8 8 4.5433 2.5931 2.3425 9 7 6.8474 2.5105 1.5627 10 6 7.2036 3.9398 1.4717 11 6 8.5777 3.5252 2.0283 12 8 8.6598 3.5752 3.4541 13 6 9.7380 4.2056 1.3488 14 1 10.3317 3.6667 0.6252 15 6 10.0452 5.5144 1.6550 16 7 10.9826 6.1446 0.9815 17 14 9.1299 6.3923 3.0264 18 1 9.7708 6.0793 4.3289 19 1 9.1748 7.8581 2.7923 20 1 7.7163 5.9376 3.0483 21 6 8.2708 2.1222 1.4740 22 8 3.4537 -0.7252 -0.0063 23 7 2.2869 -1.0423 -0.0006 24 1 -0.3634 -0.0001 -1.0277 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 2.0708 2.1743 0.0006 28 1 4.7647 2.3211 -0.5153 29 1 5.6656 0.7861 -0.5156 30 1 6.6316 4.5788 2.1445 31 1 7.2396 4.3194 0.4506 32 1 9.4790 3.2084 3.8140 33 1 11.1990 7.0653 1.1972 34 1 8.6210 1.9667 0.4535 35 1 8.5495 1.3126 2.1486 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000526041446.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:47:14 Heat of formation + Delta-G solvation = -40.042144 kcal Electronic energy + Delta-G solvation = -22762.737532 eV Core-core repulsion = 19085.282403 eV Total energy + Delta-G solvation = -3677.455129 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 302.081 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -46.16055 -40.40771 -38.30332 -37.15432 -35.97611 -35.89122 -34.83163 -34.44137 -29.93987 -29.70919 -29.31115 -27.14378 -26.30402 -24.32122 -21.69263 -21.26593 -19.97246 -19.52986 -19.03555 -18.68243 -18.38287 -17.35150 -17.28408 -16.90487 -16.22092 -15.89624 -15.50701 -15.15956 -14.96032 -14.89083 -14.26172 -14.24185 -14.15732 -13.90775 -13.76868 -13.51821 -13.33886 -13.31892 -13.27394 -12.89324 -12.70092 -12.53745 -12.27306 -12.25101 -11.85571 -11.14671 -10.91837 -10.72555 -10.65235 -10.45688 -9.79545 -8.30766 -6.44143 -1.12577 0.24867 1.05466 1.37680 1.49032 1.53935 1.70256 1.79038 2.43872 2.72695 2.86264 3.03993 3.08174 3.12730 3.43157 3.67967 3.75640 3.91391 4.02829 4.34986 4.36247 4.40957 4.64317 4.65285 4.65745 4.76361 4.79246 4.87645 4.99788 5.13978 5.15816 5.50981 5.71503 6.12504 6.69260 7.00250 7.16150 7.36332 8.81661 Molecular weight = 302.08amu Principal moments of inertia in cm(-1) A = 0.034768 B = 0.003773 C = 0.003715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.136115 B = 7419.082073 C = 7534.220479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.014 3.986 3 C -0.207 4.207 4 C -0.051 4.051 5 C -0.535 4.535 6 S 2.626 3.374 7 O -0.980 6.980 8 O -0.976 6.976 9 N -1.027 6.027 10 C 0.128 3.872 11 C 0.186 3.814 12 O -0.571 6.571 13 C -0.537 4.537 14 H 0.064 0.936 15 C 0.044 3.956 16 N -0.928 5.928 17 Si 0.952 3.048 18 H -0.283 1.283 19 H -0.315 1.315 20 H -0.249 1.249 21 C 0.112 3.888 22 O 0.085 5.915 23 N -0.386 5.386 24 H 0.101 0.899 25 H 0.080 0.920 26 H 0.106 0.894 27 H 0.210 0.790 28 H 0.197 0.803 29 H 0.183 0.817 30 H 0.068 0.932 31 H 0.118 0.882 32 H 0.386 0.614 33 H 0.268 0.732 34 H 0.112 0.888 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.362 -8.014 -4.959 18.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.144 4.144 3 C -0.230 4.230 4 C -0.116 4.116 5 C -0.664 4.664 6 S 2.724 3.276 7 O -0.971 6.971 8 O -0.966 6.966 9 N -0.867 5.867 10 C 0.003 3.997 11 C 0.143 3.857 12 O -0.380 6.380 13 C -0.576 4.576 14 H 0.082 0.918 15 C -0.158 4.158 16 N -0.566 5.566 17 Si 0.782 3.218 18 H -0.209 1.209 19 H -0.244 1.244 20 H -0.173 1.173 21 C -0.013 4.013 22 O 0.021 5.979 23 N -0.094 5.094 24 H 0.119 0.881 25 H 0.099 0.901 26 H 0.124 0.876 27 H 0.227 0.773 28 H 0.215 0.785 29 H 0.201 0.799 30 H 0.086 0.914 31 H 0.136 0.864 32 H 0.235 0.765 33 H 0.077 0.923 34 H 0.130 0.870 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -17.688 -9.301 -4.212 20.423 hybrid contribution 0.707 1.137 -0.046 1.339 sum -16.981 -8.164 -4.258 19.317 Atomic orbital electron populations 1.20427 0.82699 1.05297 1.05101 1.24402 1.01142 0.88010 1.00863 1.23133 0.90123 1.03228 1.06474 1.23481 0.97142 0.84208 1.06751 1.29391 1.00012 1.09998 1.27000 1.04518 0.72415 0.72779 0.77915 1.93543 1.82300 1.47669 1.73567 1.93539 1.65802 1.63958 1.73339 1.60061 1.19472 1.18179 1.88953 1.23464 0.93899 0.80258 1.02094 1.20647 0.92823 0.92992 0.79201 1.86230 1.45242 1.84670 1.21823 1.21397 1.14213 0.97310 1.24631 0.91805 1.25580 0.94876 0.98164 0.97175 1.70031 1.32808 1.12455 1.41318 0.85698 0.81370 0.74929 0.79825 1.20906 1.24389 1.17289 1.23644 0.75962 0.98800 1.02884 1.84842 1.22083 1.22758 1.68262 1.73863 0.89443 1.25362 1.20738 0.88064 0.90149 0.87561 0.77313 0.78534 0.79940 0.91398 0.86401 0.76473 0.92320 0.87029 0.89774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.95 10.47 71.23 0.75 -0.21 16 2 C 0.01 0.30 7.33 43.58 0.32 0.62 16 3 C -0.21 -4.14 11.06 22.40 0.25 -3.89 16 4 C -0.05 -1.18 6.75 25.04 0.17 -1.01 16 5 C -0.54 -9.98 6.74 71.24 0.48 -9.50 16 6 S 2.63 78.39 5.91 -56.49 -0.33 78.05 16 7 O -0.98 -35.82 18.02 -127.65 -2.30 -38.12 16 8 O -0.98 -34.76 18.02 -127.65 -2.30 -37.06 16 9 N -1.03 -32.49 4.00 -532.62 -2.13 -34.63 16 10 C 0.13 4.55 7.36 86.49 0.64 5.18 16 11 C 0.19 7.37 0.93 -10.88 -0.01 7.36 16 12 O -0.57 -23.05 10.55 -148.98 -1.57 -24.63 16 13 C -0.54 -25.45 9.16 25.60 0.23 -25.22 16 14 H 0.06 3.25 8.06 -2.91 -0.02 3.23 16 15 C 0.04 2.24 5.47 84.66 0.46 2.70 16 16 N -0.93 -51.87 13.96 21.45 0.30 -51.57 16 17 Si 0.95 43.27 25.58 68.60 1.75 45.02 16 18 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 19 H -0.31 -14.53 7.11 99.48 0.71 -13.83 16 20 H -0.25 -10.87 5.30 99.48 0.53 -10.34 16 21 C 0.11 3.57 8.32 86.44 0.72 4.29 16 22 O 0.09 2.35 11.20 71.56 0.80 3.15 16 23 N -0.39 -10.47 12.07 -49.55 -0.60 -11.07 16 24 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.08 0.97 8.14 -2.38 -0.02 0.96 16 26 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.21 2.77 8.06 -2.91 -0.02 2.75 16 28 H 0.20 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.18 2.48 8.14 -2.39 -0.02 2.46 16 30 H 0.07 2.58 6.82 -2.39 -0.02 2.57 16 31 H 0.12 3.63 8.09 -2.39 -0.02 3.61 16 32 H 0.39 13.13 9.10 -74.05 -0.67 12.46 16 33 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 34 H 0.11 3.03 8.09 -2.39 -0.02 3.01 16 35 H 0.08 2.56 8.14 -2.38 -0.02 2.54 16 Total: -1.00 -73.72 317.79 -2.10 -75.82 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: 0.28 Total: 14.69 kcal Atomic # 6 Polarization: -23.67 SS G_CDS: 4.00 Total: -19.67 kcal Atomic # 7 Polarization: -94.84 SS G_CDS: -2.43 Total: -97.27 kcal Atomic # 8 Polarization: -91.28 SS G_CDS: -5.37 Total: -96.65 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 1.75 Total: 45.02 kcal Atomic # 16 Polarization: 78.39 SS G_CDS: -0.33 Total: 78.05 kcal Total: -73.72 -2.10 -75.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526041446.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.776 kcal (2) G-P(sol) polarization free energy of solvation -73.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds