Wall clock time and date at job start Tue Mar 31 2020 03:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81400 * 103.00148 * 2 1 4 4 C 1.52997 * 109.47257 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47078 * 179.97438 * 4 3 2 6 6 N 1.46503 * 109.46902 * 179.97438 * 5 4 3 7 7 C 1.34777 * 119.99698 * 179.97438 * 6 5 4 8 8 O 1.21577 * 120.00491 * 354.92447 * 7 6 5 9 9 N 1.34779 * 119.99724 * 174.91875 * 7 6 5 10 10 C 1.47077 * 120.88116 * 184.71934 * 9 7 6 11 11 C 1.53694 * 108.28002 * 128.75922 * 10 9 7 12 12 N 1.46902 * 109.25585 * 54.07963 * 11 10 9 13 13 C 1.46906 * 110.99796 * 172.61479 * 12 11 10 14 14 C 1.50705 * 109.46502 * 294.30051 * 13 12 11 15 15 H 1.07994 * 120.00387 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99140 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00555 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99592 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47538 * 89.99609 * 18 16 14 20 20 H 1.48504 * 109.47004 * 210.00132 * 18 16 14 21 21 H 1.48507 * 109.47060 * 329.99535 * 18 16 14 22 22 C 1.46894 * 111.26942 * 296.76144 * 12 11 10 23 23 C 1.47079 * 120.88359 * 5.00108 * 9 7 6 24 24 H 1.08998 * 109.46947 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46793 * 299.99925 * 1 2 3 26 26 H 1.08998 * 109.46943 * 59.99916 * 1 2 3 27 27 H 1.09001 * 109.46861 * 59.99770 * 3 2 1 28 28 H 1.08997 * 109.46584 * 300.00109 * 3 2 1 29 29 H 1.09001 * 109.47273 * 60.00145 * 4 3 2 30 30 H 1.09005 * 109.47083 * 300.00122 * 4 3 2 31 31 H 1.08992 * 109.47311 * 299.99807 * 5 4 3 32 32 H 1.08996 * 109.47284 * 60.00181 * 5 4 3 33 33 H 0.96995 * 119.99930 * 0.02562 * 6 5 4 34 34 H 1.09002 * 109.63307 * 248.52579 * 10 9 7 35 35 H 1.08998 * 109.62919 * 9.10886 * 10 9 7 36 36 H 1.09002 * 109.64637 * 294.08218 * 11 10 9 37 37 H 1.08993 * 109.42829 * 173.95100 * 11 10 9 38 38 H 1.08994 * 109.47151 * 54.29915 * 13 12 11 39 39 H 1.08999 * 109.46938 * 174.30879 * 13 12 11 40 40 H 0.97005 * 120.00001 * 180.02562 * 17 16 14 41 41 H 1.09007 * 109.49598 * 303.14255 * 22 12 11 42 42 H 1.09005 * 109.49388 * 183.06457 * 22 12 11 43 43 H 1.09000 * 109.62549 * 350.89650 * 23 9 7 44 44 H 1.09003 * 109.62960 * 111.47040 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7424 1.9399 0.0006 5 6 4.0865 3.4307 0.0000 6 7 5.5422 3.5958 0.0012 7 6 6.0802 4.8315 0.0004 8 8 5.3615 5.8075 -0.0945 9 7 7.4151 4.9853 0.1049 10 6 8.0149 6.3241 0.2097 11 6 8.9602 6.3355 1.4215 12 7 9.9224 5.2326 1.2956 13 6 10.9526 5.3110 2.3400 14 6 11.7859 6.5492 2.1315 15 1 11.5719 7.2114 1.3056 16 6 12.8221 6.8360 2.9946 17 7 13.0829 6.0294 4.0000 18 14 13.8546 8.3713 2.7367 19 1 13.2501 9.5052 3.4808 20 1 15.2326 8.1305 3.2351 21 1 13.9021 8.6984 1.2889 22 6 9.2453 3.9292 1.3208 23 6 8.3113 3.8190 0.1111 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8032 2.2371 0.8900 28 1 1.8032 2.2370 -0.8900 29 1 4.1617 1.4703 -0.8891 30 1 4.1609 1.4704 0.8909 31 1 3.6681 3.8998 -0.8904 32 1 3.6672 3.9008 0.8895 33 1 6.1187 2.8157 0.0019 34 1 8.5758 6.5462 -0.6981 35 1 7.2297 7.0672 0.3493 36 1 8.3829 6.2117 2.3378 37 1 9.4962 7.2839 1.4542 38 1 10.4750 5.3549 3.3188 39 1 11.5918 4.4297 2.2866 40 1 13.8117 6.2315 4.6075 41 1 8.6641 3.8389 2.2385 42 1 9.9882 3.1326 1.2805 43 1 7.7221 2.9050 0.1853 44 1 8.9001 3.8049 -0.8061 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601574451.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:33 Heat of formation + Delta-G solvation = -22.381491 kcal Electronic energy + Delta-G solvation = -22203.654736 eV Core-core repulsion = 18896.350281 eV Total energy + Delta-G solvation = -3307.304454 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.157 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.23946 -37.76671 -36.01488 -34.41868 -32.93699 -32.29707 -30.64332 -29.44214 -28.34082 -26.48402 -25.27368 -23.22545 -22.23801 -22.05674 -20.73364 -19.24402 -17.94091 -16.87599 -16.38573 -16.27970 -16.02120 -15.25715 -14.99637 -14.61981 -14.45213 -14.18400 -14.11501 -14.03046 -13.79737 -13.62996 -13.47792 -13.32066 -12.65651 -12.45015 -12.16103 -11.98699 -11.72265 -11.43952 -11.29108 -11.14161 -10.83111 -10.75096 -10.62563 -10.51517 -10.44703 -10.01424 -9.85651 -9.28208 -9.18941 -8.48968 -8.33301 -8.13847 -7.33058 -6.06471 -4.08242 1.17842 2.11842 2.71029 3.29106 3.30434 3.36825 3.40930 3.86925 4.38750 4.39361 4.47166 4.61395 4.66402 4.70166 4.78170 5.01975 5.07755 5.20776 5.23455 5.28355 5.31466 5.36562 5.43187 5.63124 5.66194 5.71889 5.83071 5.93466 6.03686 6.19164 6.38846 6.42208 6.55578 6.67932 7.03830 7.21549 7.27819 7.74063 7.98138 8.01160 8.11974 8.47280 8.65899 8.99096 9.56396 11.04311 Molecular weight = 301.16amu Principal moments of inertia in cm(-1) A = 0.036675 B = 0.002223 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.269856 B =12592.831777 C =13065.441335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.264 6.264 3 C -0.081 4.081 4 C -0.116 4.116 5 C 0.145 3.855 6 N -0.751 5.751 7 C 0.708 3.292 8 O -0.597 6.597 9 N -0.625 5.625 10 C 0.133 3.867 11 C 0.051 3.949 12 N -0.535 5.535 13 C 0.194 3.806 14 C -0.509 4.509 15 H 0.064 0.936 16 C 0.055 3.945 17 N -0.898 5.898 18 Si 0.898 3.102 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.272 1.272 22 C 0.040 3.960 23 C 0.118 3.882 24 H 0.101 0.899 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.396 0.604 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.024 0.976 37 H 0.097 0.903 38 H -0.009 1.009 39 H 0.032 0.968 40 H 0.262 0.738 41 H 0.026 0.974 42 H 0.081 0.919 43 H 0.069 0.931 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.443 -11.301 -8.468 25.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.038 6.038 3 C -0.230 4.230 4 C -0.155 4.155 5 C 0.019 3.981 6 N -0.410 5.410 7 C 0.409 3.591 8 O -0.476 6.476 9 N -0.362 5.362 10 C 0.010 3.990 11 C -0.079 4.079 12 N -0.260 5.260 13 C 0.069 3.931 14 C -0.548 4.548 15 H 0.083 0.917 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.726 3.274 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.197 1.197 22 C -0.089 4.089 23 C -0.005 4.005 24 H 0.120 0.880 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.233 0.767 34 H 0.089 0.911 35 H 0.106 0.894 36 H 0.043 0.957 37 H 0.115 0.885 38 H 0.009 0.991 39 H 0.050 0.950 40 H 0.071 0.929 41 H 0.045 0.955 42 H 0.099 0.901 43 H 0.087 0.913 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -20.959 -11.436 -8.815 25.452 hybrid contribution -0.297 1.191 0.860 1.499 sum -21.256 -10.246 -7.955 24.902 Atomic orbital electron populations 1.23383 0.93978 1.06605 1.05030 1.86981 1.07577 1.11154 1.98103 1.23263 0.99670 0.94479 1.05580 1.21507 0.93374 0.96360 1.04294 1.21062 0.79936 0.94610 1.02522 1.45211 1.07362 1.07027 1.81409 1.15799 0.82105 0.83365 0.77803 1.90884 1.60006 1.38299 1.58391 1.47416 1.03643 1.08625 1.76509 1.21838 0.95779 0.82221 0.99137 1.22456 0.93005 0.97609 0.94791 1.62078 1.12647 0.99709 1.51569 1.19731 0.88405 0.98179 0.86816 1.21144 1.14093 1.07553 1.11997 0.91746 1.24995 0.97419 0.97057 0.95130 1.69956 1.30715 1.37222 1.15860 0.86489 0.79428 0.82954 0.78502 1.20725 1.21271 1.19723 1.22384 0.96347 0.94755 0.95453 1.21773 0.91761 0.86906 1.00095 0.88025 0.90392 0.90410 0.89558 0.89569 0.90161 0.90115 0.91454 0.91606 0.76727 0.91122 0.89380 0.95741 0.88471 0.99122 0.95043 0.92888 0.95536 0.90092 0.91264 0.90580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.59 10.76 101.05 1.09 0.50 16 2 S -0.26 -1.99 22.38 -107.50 -2.41 -4.39 16 3 C -0.08 -0.51 5.94 37.16 0.22 -0.29 16 4 C -0.12 -0.80 5.34 -26.73 -0.14 -0.94 16 5 C 0.15 1.35 5.68 -4.04 -0.02 1.33 16 6 N -0.75 -8.47 5.47 -65.23 -0.36 -8.83 16 7 C 0.71 10.97 8.31 -86.92 -0.72 10.25 16 8 O -0.60 -11.30 15.83 5.30 0.08 -11.22 16 9 N -0.62 -9.58 3.00 -177.92 -0.53 -10.11 16 10 C 0.13 2.21 6.61 -3.37 -0.02 2.19 16 11 C 0.05 0.97 5.47 -3.46 -0.02 0.95 16 12 N -0.53 -11.02 4.62 -235.46 -1.09 -12.10 16 13 C 0.19 4.89 4.72 -4.97 -0.02 4.87 16 14 C -0.51 -13.93 8.41 -34.44 -0.29 -14.22 16 15 H 0.06 1.73 7.13 -52.49 -0.37 1.36 16 16 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 17 N -0.90 -26.29 13.29 55.43 0.74 -25.56 16 18 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 21 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 22 C 0.04 0.67 5.62 -3.71 -0.02 0.65 16 23 C 0.12 1.56 6.59 -3.61 -0.02 1.54 16 24 H 0.10 0.41 8.14 -51.92 -0.42 -0.01 16 25 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.08 0.32 8.14 -51.92 -0.42 -0.11 16 27 H 0.09 0.50 8.14 -51.92 -0.42 0.08 16 28 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.40 3.59 5.97 -40.82 -0.24 3.35 16 34 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.09 1.48 7.09 -51.93 -0.37 1.11 16 36 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.10 1.99 6.67 -51.93 -0.35 1.64 16 38 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 39 H 0.03 0.84 7.97 -51.93 -0.41 0.43 16 40 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 41 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.08 1.28 7.99 -51.93 -0.41 0.86 16 43 H 0.07 0.68 5.63 -51.93 -0.29 0.39 16 44 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 365.08 15.07 5.50 5.50 Total: -1.00 -32.57 365.08 -10.67 -43.23 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -7.51 Total: -1.10 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: -0.08 Total: 8.27 kcal Atomic # 7 Polarization: -55.37 SS G_CDS: -1.24 Total: -56.61 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.08 Total: -11.22 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -1.99 SS G_CDS: -2.41 Total: -4.39 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.57 -10.67 -43.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601574451.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.850 kcal (2) G-P(sol) polarization free energy of solvation -32.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds