Wall clock time and date at job start Tue Mar 31 2020 03:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46506 * 120.00054 * 2 1 4 4 S 1.65604 * 120.00221 * 179.97438 * 2 1 3 5 5 O 1.42100 * 106.40074 * 336.46148 * 4 2 1 6 6 O 1.42104 * 106.40403 * 203.54560 * 4 2 1 7 7 C 1.76195 * 107.21855 * 90.00324 * 4 2 1 8 8 C 1.35164 * 125.60772 * 89.99774 * 7 4 2 9 9 C 1.40332 * 107.12547 * 179.97438 * 8 7 4 10 10 C 1.36668 * 106.70474 * 0.02562 * 9 8 7 11 11 C 1.46512 * 125.99653 * 180.02562 * 10 9 8 12 12 O 1.21743 * 120.00269 * 354.86379 * 11 10 9 13 13 N 1.34781 * 120.00023 * 174.87322 * 11 10 9 14 14 C 1.46504 * 120.00027 * 4.90848 * 13 11 10 15 15 C 1.36850 * 119.99924 * 184.91375 * 13 11 10 16 16 H 1.07997 * 119.99733 * 37.54963 * 15 13 11 17 17 C 1.39023 * 120.00014 * 217.54877 * 15 13 11 18 18 N 1.31384 * 119.99829 * 9.32821 * 17 15 13 19 19 Si 1.86800 * 120.00037 * 189.32464 * 17 15 13 20 20 H 1.48494 * 109.47002 * 60.00273 * 19 17 15 21 21 H 1.48503 * 109.47125 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47048 * 299.99952 * 19 17 15 23 23 O 1.33966 * 125.61112 * 269.69451 * 7 4 2 24 24 H 1.08992 * 109.47384 * 270.00333 * 1 2 3 25 25 H 1.09000 * 109.46888 * 30.00633 * 1 2 3 26 26 H 1.09002 * 109.46675 * 150.00523 * 1 2 3 27 27 H 1.09005 * 109.46538 * 239.99363 * 3 2 1 28 28 H 1.08995 * 109.46643 * 359.97438 * 3 2 1 29 29 H 1.08995 * 109.47158 * 119.99604 * 3 2 1 30 30 H 1.08002 * 126.44085 * 359.96551 * 8 7 4 31 31 H 1.07998 * 126.64817 * 180.02562 * 9 8 7 32 32 H 1.08996 * 109.46767 * 58.24173 * 14 13 11 33 33 H 1.08993 * 109.46944 * 178.24302 * 14 13 11 34 34 H 1.08999 * 109.47021 * 298.24878 * 14 13 11 35 35 H 0.97005 * 120.00033 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 16 2.2930 -1.4341 0.0006 5 8 1.4114 -2.4063 0.5455 6 8 3.5760 -1.1565 0.5451 7 6 2.5539 -1.8865 -1.6821 8 6 3.6221 -1.5391 -2.4339 9 6 3.4342 -2.1037 -3.7048 10 6 2.2448 -2.7758 -3.6642 11 6 1.6396 -3.5227 -4.7698 12 8 2.1574 -3.5057 -5.8714 13 7 0.5094 -4.2285 -4.5672 14 6 -0.1730 -4.1631 -3.2725 15 6 -0.0007 -5.0064 -5.5710 16 1 0.6656 -5.5499 -6.2245 17 6 -1.3764 -5.0969 -5.7495 18 7 -2.1794 -4.3005 -5.0807 19 14 -2.0833 -6.3506 -6.9402 20 1 -1.6863 -7.7166 -6.5141 21 1 -3.5646 -6.2452 -6.9485 22 1 -1.5611 -6.0864 -8.3050 23 8 1.7290 -2.6362 -2.4252 24 1 -0.3634 0.0001 1.0276 25 1 -0.3633 0.8899 -0.5139 26 1 -0.3633 -0.8901 -0.5138 27 1 2.8242 1.3264 -0.8900 28 1 1.4892 2.0972 -0.0005 29 1 2.8241 1.3265 0.8900 30 1 4.4623 -0.9394 -2.1164 31 1 4.1003 -2.0229 -4.5510 32 1 -0.4377 -3.1287 -3.0532 33 1 -1.0777 -4.7700 -3.3076 34 1 0.4887 -4.5417 -2.4935 35 1 -3.1393 -4.3634 -5.2055 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701238607.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:30 Heat of formation + Delta-G solvation = -69.166263 kcal Electronic energy + Delta-G solvation = -23178.626760 eV Core-core repulsion = 19499.908714 eV Total energy + Delta-G solvation = -3678.718046 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 302.081 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.33019 -38.33490 -37.39019 -36.35361 -35.95822 -35.01574 -32.91237 -31.89814 -29.79333 -28.29954 -26.51061 -25.19236 -24.86498 -22.80495 -21.75873 -19.72500 -19.24157 -18.18347 -17.56595 -17.19147 -16.45619 -16.20857 -16.04573 -15.19687 -14.79380 -14.58679 -14.25562 -13.83493 -13.65025 -13.37300 -13.27275 -12.85272 -12.79299 -12.68168 -12.43277 -12.20721 -11.97775 -11.89087 -11.72527 -11.56671 -11.48294 -11.39810 -10.94942 -10.63846 -10.51580 -9.93089 -9.38700 -9.17290 -8.98877 -8.71716 -7.76621 -6.59314 -4.22882 0.14708 1.08831 2.31955 2.75939 3.10825 3.12933 3.15063 3.21155 3.60029 3.93826 4.04098 4.35275 4.54111 4.59057 4.90278 4.98326 5.15112 5.18275 5.35236 5.40038 5.51655 5.62952 5.65912 5.71885 5.87972 5.94438 6.24190 6.43456 6.50011 6.56225 6.93035 7.09816 7.30368 7.95220 8.21105 8.85490 9.03640 9.63763 10.44475 Molecular weight = 302.08amu Principal moments of inertia in cm(-1) A = 0.024085 B = 0.004397 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.283738 B = 6366.204276 C = 6969.123637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -1.002 6.002 3 C 0.088 3.912 4 S 2.727 3.273 5 O -0.937 6.937 6 O -0.941 6.941 7 C -0.605 4.605 8 C -0.086 4.086 9 C -0.193 4.193 10 C 0.040 3.960 11 C 0.497 3.503 12 O -0.562 6.562 13 N -0.407 5.407 14 C 0.088 3.912 15 C -0.307 4.307 16 H 0.100 0.900 17 C 0.039 3.961 18 N -0.860 5.860 19 Si 0.935 3.065 20 H -0.269 1.269 21 H -0.280 1.280 22 H -0.268 1.268 23 O -0.104 6.104 24 H 0.063 0.937 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.061 0.939 28 H 0.083 0.917 29 H 0.069 0.931 30 H 0.163 0.837 31 H 0.164 0.836 32 H 0.049 0.951 33 H 0.100 0.900 34 H 0.037 0.963 35 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.828 9.863 10.740 15.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.842 5.842 3 C -0.057 4.057 4 S 2.811 3.189 5 O -0.928 6.928 6 O -0.931 6.931 7 C -0.738 4.738 8 C -0.107 4.107 9 C -0.214 4.214 10 C -0.018 4.018 11 C 0.285 3.715 12 O -0.447 6.447 13 N -0.123 5.123 14 C -0.056 4.056 15 C -0.435 4.435 16 H 0.117 0.883 17 C -0.168 4.168 18 N -0.496 5.496 19 Si 0.760 3.240 20 H -0.194 1.194 21 H -0.206 1.206 22 H -0.193 1.193 23 O 0.003 5.997 24 H 0.081 0.919 25 H 0.094 0.906 26 H 0.098 0.902 27 H 0.079 0.921 28 H 0.102 0.898 29 H 0.088 0.912 30 H 0.181 0.819 31 H 0.181 0.819 32 H 0.067 0.933 33 H 0.119 0.881 34 H 0.056 0.944 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.767 9.297 11.032 14.911 hybrid contribution -0.244 -0.138 -1.357 1.386 sum 3.523 9.160 9.674 13.781 Atomic orbital electron populations 1.21636 0.77280 1.04051 1.02576 1.57399 1.15846 1.21552 1.89380 1.21609 0.96840 0.85034 1.02249 1.01438 0.73198 0.72403 0.71875 1.93603 1.65654 1.58113 1.75390 1.93611 1.40474 1.84792 1.74213 1.35723 1.02041 1.14337 1.21650 1.21756 0.97304 0.98618 0.93052 1.21964 0.97994 1.02727 0.98754 1.23832 0.94630 0.99509 0.83866 1.16736 0.86432 0.83285 0.85046 1.90729 1.65337 1.66437 1.22219 1.43552 1.20248 1.36280 1.12230 1.21811 0.98573 1.01973 0.83217 1.19643 0.90892 1.22230 1.10730 0.88257 1.25623 0.96280 0.97301 0.97586 1.69890 1.04832 1.34861 1.40059 0.85860 0.77586 0.80120 0.80422 1.19394 1.20560 1.19324 1.84483 1.41722 1.53326 1.20121 0.91865 0.90627 0.90201 0.92066 0.89828 0.91202 0.81903 0.81890 0.93277 0.88123 0.94442 0.91396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.86 10.26 59.85 0.61 1.47 16 2 N -1.00 -10.82 3.58 -129.21 -0.46 -11.28 16 3 C 0.09 0.69 10.30 59.85 0.62 1.31 16 4 S 2.73 38.62 5.80 -107.50 -0.62 38.00 16 5 O -0.94 -15.89 17.09 -57.27 -0.98 -16.87 16 6 O -0.94 -13.99 16.99 -57.17 -0.97 -14.96 16 7 C -0.61 -10.08 7.35 29.64 0.22 -9.86 16 8 C -0.09 -1.34 10.58 -39.89 -0.42 -1.76 16 9 C -0.19 -3.55 10.63 -39.36 -0.42 -3.97 16 10 C 0.04 0.87 6.84 -36.82 -0.25 0.62 16 11 C 0.50 12.80 7.58 -12.92 -0.10 12.70 16 12 O -0.56 -15.82 16.78 5.15 0.09 -15.73 16 13 N -0.41 -10.67 2.94 -123.75 -0.36 -11.03 16 14 C 0.09 2.04 7.97 59.85 0.48 2.51 16 15 C -0.31 -8.34 8.93 -15.02 -0.13 -8.47 16 16 H 0.10 2.73 7.75 -52.49 -0.41 2.33 16 17 C 0.04 0.99 5.03 -17.45 -0.09 0.90 16 18 N -0.86 -22.26 11.23 55.50 0.62 -21.63 16 19 Si 0.93 19.72 29.56 -169.99 -5.03 14.69 16 20 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 21 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 22 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 23 O -0.10 -2.08 7.42 4.87 0.04 -2.04 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.07 0.56 7.92 -51.93 -0.41 0.14 16 26 H 0.08 0.87 7.79 -51.93 -0.40 0.47 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.08 0.46 7.79 -51.93 -0.40 0.06 16 29 H 0.07 0.51 8.01 -51.93 -0.42 0.09 16 30 H 0.16 1.91 8.06 -52.49 -0.42 1.49 16 31 H 0.16 2.76 8.06 -52.49 -0.42 2.34 16 32 H 0.05 1.11 7.39 -51.93 -0.38 0.72 16 33 H 0.10 2.42 6.02 -51.93 -0.31 2.10 16 34 H 0.04 0.81 7.26 -51.93 -0.38 0.43 16 35 H 0.28 6.65 8.31 -40.82 -0.34 6.31 16 LS Contribution 318.82 15.07 4.80 4.80 Total: -1.00 -33.52 318.82 -6.31 -39.82 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -3.94 Total: 0.79 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: 0.51 Total: -4.56 kcal Atomic # 7 Polarization: -43.75 SS G_CDS: -0.20 Total: -43.95 kcal Atomic # 8 Polarization: -47.77 SS G_CDS: -1.83 Total: -49.60 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.03 Total: 14.69 kcal Atomic # 16 Polarization: 38.62 SS G_CDS: -0.62 Total: 38.00 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -33.52 -6.31 -39.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701238607.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.345 kcal (2) G-P(sol) polarization free energy of solvation -33.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds