Wall clock time and date at job start Tue Mar 31 2020 04:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86800 * 119.99684 * 2 1 4 4 H 1.48505 * 109.46848 * 239.99590 * 3 2 1 5 5 H 1.48501 * 109.47327 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47297 * 119.99801 * 3 2 1 7 7 C 1.40043 * 119.99819 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99700 * 179.97438 * 7 2 1 9 9 C 1.46375 * 120.00483 * 0.02562 * 7 2 1 10 10 O 1.21683 * 119.99868 * 359.97438 * 9 7 2 11 11 N 1.34777 * 120.00032 * 179.97438 * 9 7 2 12 12 N 1.40105 * 119.99838 * 180.02562 * 11 9 7 13 13 C 1.34777 * 119.99838 * 180.02562 * 12 11 9 14 14 O 1.21571 * 119.99716 * 359.97438 * 13 12 11 15 15 C 1.47695 * 119.99725 * 180.02562 * 13 12 11 16 16 C 1.39689 * 120.07828 * 180.02562 * 15 13 12 17 17 C 1.37750 * 119.91816 * 180.02562 * 16 15 13 18 18 C 1.39013 * 120.08097 * 359.97438 * 17 16 15 19 19 N 1.39975 * 119.91865 * 179.97438 * 18 17 16 20 20 C 1.35136 * 127.39187 * 179.70416 * 19 18 17 21 21 N 1.30714 * 107.26137 * 179.90064 * 20 19 18 22 22 N 1.28417 * 110.65603 * 0.38282 * 21 20 19 23 23 N 1.28941 * 110.21937 * 359.76009 * 22 21 20 24 24 C 1.39021 * 120.15913 * 0.25669 * 18 17 16 25 25 C 1.37744 * 120.08060 * 359.48633 * 24 18 17 26 26 H 0.96998 * 120.00189 * 0.02562 * 1 2 3 27 27 H 0.96997 * 119.99903 * 359.97438 * 11 9 7 28 28 H 0.97000 * 119.99449 * 359.97438 * 12 11 9 29 29 H 1.07998 * 120.04149 * 359.97438 * 16 15 13 30 30 H 1.08001 * 119.95908 * 180.02562 * 17 16 15 31 31 H 1.08001 * 126.36534 * 0.02562 * 20 19 18 32 32 H 1.08003 * 119.95341 * 179.72529 * 24 18 17 33 33 H 1.07998 * 120.03909 * 180.25758 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0945 1.6964 -1.2125 5 1 1.2757 2.7465 -0.0006 6 1 3.0944 1.6966 1.2125 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2128 0.0001 9 6 1.2751 -2.4805 0.0005 10 8 0.0583 -2.4805 0.0005 11 7 1.9491 -3.6477 0.0005 12 7 1.2486 -4.8610 0.0000 13 6 1.9225 -6.0282 0.0005 14 8 3.1382 -6.0281 0.0010 15 6 1.1840 -7.3073 -0.0006 16 6 1.8808 -8.5180 0.0005 17 6 1.1888 -9.7090 -0.0011 18 6 -0.2014 -9.7071 -0.0033 19 7 -0.9012 -10.9193 -0.0055 20 6 -2.2413 -11.0932 -0.0022 21 7 -2.4653 -12.3810 -0.0082 22 7 -1.3591 -13.0333 -0.0070 23 7 -0.3607 -12.2173 -0.0053 24 6 -0.8982 -8.5041 -0.0092 25 6 -0.2128 -7.3093 -0.0023 26 1 -0.4850 0.8400 -0.0004 27 1 2.9191 -3.6476 0.0002 28 1 0.2786 -4.8610 0.0000 29 1 2.9608 -8.5202 0.0017 30 1 1.7268 -10.6454 0.0001 31 1 -2.9883 -10.3132 0.0023 32 1 -1.9782 -8.5065 -0.0154 33 1 -0.7548 -6.3751 -0.0027 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771894690.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:00:58 Heat of formation + Delta-G solvation = 89.026867 kcal Electronic energy + Delta-G solvation = -22361.065223 eV Core-core repulsion = 18618.348498 eV Total energy + Delta-G solvation = -3742.716726 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 302.091 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.35708 -41.51498 -40.11200 -39.01873 -36.24344 -36.04409 -34.63473 -33.55971 -32.82910 -32.07893 -30.91483 -28.28169 -26.58919 -25.10906 -24.10505 -22.93354 -22.41634 -22.12220 -19.97512 -19.74580 -18.55887 -18.17838 -17.77270 -17.32042 -17.22033 -16.52316 -16.34394 -16.01535 -15.66136 -15.30526 -14.84346 -14.80017 -14.57254 -14.42686 -14.34500 -14.22246 -13.40693 -13.29311 -12.81897 -12.72666 -12.66150 -12.33915 -12.20303 -12.07526 -11.98173 -11.69031 -11.35781 -10.94363 -10.32751 -10.13851 -9.94575 -9.02663 -8.39831 -6.94936 -1.03931 0.07767 0.18438 0.62059 1.11685 1.17735 1.44342 1.46354 1.59425 1.63177 2.27521 2.37053 2.59108 2.92836 3.17331 3.26273 3.50779 3.58753 3.66872 3.76649 3.87181 3.97756 4.17704 4.26699 4.38847 4.74301 4.79826 4.92509 5.10765 5.19151 5.27049 5.46842 5.56276 5.96053 6.07990 6.30440 6.77241 7.12087 7.20914 7.23345 8.30288 8.54655 Molecular weight = 302.09amu Principal moments of inertia in cm(-1) A = 0.040634 B = 0.002444 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.905461 B =11455.240972 C =12134.301188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.036 3.964 3 Si 1.001 2.999 4 H -0.255 1.255 5 H -0.272 1.272 6 H -0.255 1.255 7 C -0.560 4.560 8 H 0.092 0.908 9 C 0.543 3.457 10 O -0.617 6.617 11 N -0.559 5.559 12 N -0.503 5.503 13 C 0.543 3.457 14 O -0.582 6.582 15 C -0.122 4.122 16 C -0.038 4.038 17 C -0.109 4.109 18 C 0.147 3.853 19 N -0.331 5.331 20 C 0.251 3.749 21 N -0.358 5.358 22 N -0.058 5.058 23 N -0.097 5.097 24 C -0.103 4.103 25 C -0.058 4.058 26 H 0.280 0.720 27 H 0.419 0.581 28 H 0.429 0.571 29 H 0.149 0.851 30 H 0.153 0.847 31 H 0.297 0.703 32 H 0.190 0.810 33 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.424 -14.906 0.005 15.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.182 4.182 3 Si 0.820 3.180 4 H -0.179 1.179 5 H -0.196 1.196 6 H -0.179 1.179 7 C -0.597 4.597 8 H 0.110 0.890 9 C 0.349 3.651 10 O -0.502 6.502 11 N -0.311 5.311 12 N -0.247 5.247 13 C 0.331 3.669 14 O -0.463 6.463 15 C -0.127 4.127 16 C -0.058 4.058 17 C -0.129 4.129 18 C 0.054 3.946 19 N -0.121 5.121 20 C -0.045 4.045 21 N -0.206 5.206 22 N -0.053 5.053 23 N -0.082 5.082 24 C -0.123 4.123 25 C -0.078 4.078 26 H 0.090 0.910 27 H 0.260 0.740 28 H 0.272 0.728 29 H 0.166 0.834 30 H 0.171 0.829 31 H 0.312 0.688 32 H 0.207 0.793 33 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -3.315 -16.238 -0.002 16.573 hybrid contribution 0.401 1.541 0.003 1.592 sum -2.914 -14.697 0.000 14.983 Atomic orbital electron populations 1.70112 1.09253 1.29607 1.34900 1.26891 0.95641 1.04557 0.91062 0.85009 0.78209 0.74495 0.80312 1.17948 1.19641 1.17938 1.21197 0.95062 0.88647 1.54814 0.89007 1.18838 0.87330 0.82065 0.76828 1.90561 1.15117 1.86720 1.57828 1.45494 1.07948 0.95210 1.82405 1.44706 1.09422 0.97854 1.72674 1.18686 0.87378 0.83127 0.77686 1.90751 1.14459 1.87565 1.53537 1.19809 0.94615 0.91623 1.06616 1.21144 1.01558 0.89327 0.93737 1.20950 0.91650 0.99559 1.00727 1.17905 0.91845 0.81330 1.03488 1.49092 1.06938 1.06452 1.49571 1.28594 0.85506 0.97352 0.93027 1.74444 1.19953 1.03603 1.22630 1.78096 0.93307 1.23552 1.10335 1.82652 1.19403 0.84304 1.21844 1.21133 1.02775 0.87809 1.00602 1.21432 0.91844 0.99668 0.94856 0.91006 0.74042 0.72823 0.83372 0.82940 0.68839 0.79263 0.82565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -45.36 11.83 21.83 0.26 -45.10 16 2 C 0.04 1.83 5.50 85.30 0.47 2.30 16 3 Si 1.00 37.87 29.56 68.60 2.03 39.90 16 4 H -0.26 -9.19 7.11 99.48 0.71 -8.48 16 5 H -0.27 -9.87 7.11 99.48 0.71 -9.17 16 6 H -0.26 -9.18 7.11 99.48 0.71 -8.48 16 7 C -0.56 -29.50 9.54 24.83 0.24 -29.26 16 8 H 0.09 4.36 7.85 -2.91 -0.02 4.34 16 9 C 0.54 29.05 7.86 86.36 0.68 29.73 16 10 O -0.62 -36.63 14.86 -4.29 -0.06 -36.69 16 11 N -0.56 -24.70 6.26 -176.63 -1.10 -25.81 16 12 N -0.50 -18.20 6.21 -175.70 -1.09 -19.29 16 13 C 0.54 17.43 7.89 86.74 0.68 18.12 16 14 O -0.58 -22.24 16.18 -3.94 -0.06 -22.31 16 15 C -0.12 -2.69 5.88 -20.08 -0.12 -2.81 16 16 C -0.04 -0.74 9.59 22.50 0.22 -0.52 16 17 C -0.11 -1.75 9.68 22.34 0.22 -1.54 16 18 C 0.15 2.01 6.71 38.21 0.26 2.27 16 19 N -0.33 -4.98 3.85 -190.95 -0.73 -5.71 16 20 C 0.25 2.63 12.15 180.17 2.19 4.82 16 21 N -0.36 -6.79 12.15 -60.10 -0.73 -7.52 16 22 N -0.06 -1.36 13.39 37.02 0.50 -0.86 16 23 N -0.10 -2.09 13.31 37.02 0.49 -1.59 16 24 C -0.10 -0.98 9.47 22.34 0.21 -0.77 16 25 C -0.06 -0.89 9.53 22.50 0.21 -0.68 16 26 H 0.28 14.14 8.29 -92.71 -0.77 13.38 16 27 H 0.42 17.64 7.98 -213.32 -1.70 15.94 16 28 H 0.43 14.25 6.02 -213.32 -1.28 12.96 16 29 H 0.15 2.97 7.64 -2.91 -0.02 2.94 16 30 H 0.15 2.30 7.75 -2.91 -0.02 2.28 16 31 H 0.30 -0.84 7.17 -2.91 -0.02 -0.86 16 32 H 0.19 0.01 6.86 -2.91 -0.02 -0.01 16 33 H 0.16 2.14 6.39 -2.91 -0.02 2.12 16 Total: -1.00 -79.37 308.65 2.98 -76.39 By element: Atomic # 1 Polarization: 28.72 SS G_CDS: -1.76 Total: 26.96 kcal Atomic # 6 Polarization: 16.40 SS G_CDS: 5.25 Total: 21.65 kcal Atomic # 7 Polarization: -103.49 SS G_CDS: -2.41 Total: -105.90 kcal Atomic # 8 Polarization: -58.87 SS G_CDS: -0.13 Total: -59.00 kcal Atomic # 14 Polarization: 37.87 SS G_CDS: 2.03 Total: 39.90 kcal Total: -79.37 2.98 -76.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771894690.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.415 kcal (2) G-P(sol) polarization free energy of solvation -79.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds