Wall clock time and date at job start Tue Mar 31 2020 03:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99923 * 2 1 4 4 H 1.48496 * 109.47237 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46786 * 299.99957 * 3 2 1 6 6 H 1.48502 * 109.47225 * 59.99420 * 3 2 1 7 7 C 1.37879 * 120.00502 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00139 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99824 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47138 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99665 * 180.28062 * 10 9 7 12 12 O 1.21563 * 120.00283 * 359.72077 * 11 10 9 13 13 C 1.47694 * 119.99643 * 179.72383 * 11 10 9 14 14 C 1.39654 * 120.16575 * 359.72541 * 13 11 10 15 15 C 1.37862 * 119.87856 * 179.71983 * 14 13 11 16 16 C 1.38465 * 120.21563 * 0.55417 * 15 14 13 17 17 S 1.76196 * 119.82998 * 179.69688 * 16 15 14 18 18 N 1.65592 * 107.21837 * 270.02165 * 17 16 15 19 19 O 1.42096 * 106.40084 * 23.56243 * 17 16 15 20 20 O 1.42102 * 106.40170 * 156.48329 * 17 16 15 21 21 C 1.38205 * 120.33612 * 359.71875 * 16 15 14 22 22 C 1.38321 * 120.11829 * 0.02562 * 21 16 15 23 23 F 1.35105 * 120.10712 * 179.97438 * 22 21 16 24 24 H 0.96997 * 120.00009 * 0.02562 * 1 2 3 25 25 H 1.09009 * 109.46601 * 59.99932 * 9 7 2 26 26 H 1.08998 * 109.47035 * 300.00439 * 9 7 2 27 27 H 0.97001 * 119.99790 * 359.97438 * 10 9 7 28 28 H 1.08003 * 120.06626 * 359.97438 * 14 13 11 29 29 H 1.07997 * 119.89823 * 180.27284 * 15 14 13 30 30 H 0.96999 * 120.00137 * 150.00613 * 18 17 16 31 31 H 0.97002 * 120.00464 * 329.99828 * 18 17 16 32 32 H 1.08004 * 119.93679 * 180.02562 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0018 11 6 1.7540 -4.8833 -0.0037 12 8 0.5588 -5.1055 -0.0046 13 6 2.7138 -6.0058 -0.0086 14 6 4.0876 -5.7545 -0.0134 15 6 4.9783 -6.8068 -0.0121 16 6 4.5152 -8.1117 -0.0177 17 16 5.6626 -9.4488 -0.0241 18 7 5.9816 -9.8134 -1.6076 19 8 6.8723 -8.9420 0.5225 20 8 4.9755 -10.5697 0.5151 21 6 3.1576 -8.3706 -0.0188 22 6 2.2517 -7.3254 -0.0148 23 9 0.9246 -7.5788 -0.0163 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8898 26 1 0.6241 -2.5567 0.8902 27 1 3.1569 -3.4353 0.0021 28 1 4.4516 -4.7377 -0.0139 29 1 6.0407 -6.6128 -0.0114 30 1 6.8463 -10.1751 -1.8573 31 1 5.3038 -9.6654 -2.2855 32 1 2.8035 -9.3910 -0.0227 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787619054.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:15 Heat of formation + Delta-G solvation = -130.633993 kcal Electronic energy + Delta-G solvation = -21568.038017 eV Core-core repulsion = 17763.194226 eV Total energy + Delta-G solvation = -3804.843791 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 302.057 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.91936 -39.90631 -38.22101 -37.54059 -36.21193 -34.46539 -33.62533 -32.72893 -31.73049 -30.95476 -27.51003 -24.84268 -23.34150 -22.39909 -20.40644 -19.91992 -19.00363 -18.07392 -17.79426 -17.05011 -16.84012 -16.24387 -15.89039 -15.80915 -15.42523 -15.10718 -14.83690 -14.43000 -14.33381 -13.75538 -13.26808 -12.92323 -12.78849 -12.55892 -12.48027 -12.39957 -12.14178 -12.00962 -11.97317 -11.36696 -11.05460 -10.99641 -10.90150 -10.41774 -9.79797 -9.52297 -9.43461 -9.16696 -8.86694 -8.09842 -6.26362 -4.34495 -0.15870 0.11709 0.75572 2.46330 2.80918 3.17759 3.24745 3.27212 3.27554 3.59509 3.64917 3.82571 4.09897 4.25658 4.42503 4.53976 4.80411 4.88124 5.10232 5.10242 5.38980 5.53474 5.54820 5.65875 5.73922 6.34028 6.59043 7.12210 7.15756 7.36167 7.50865 7.83523 8.35209 8.58668 8.81778 9.32215 10.83752 Molecular weight = 302.06amu Principal moments of inertia in cm(-1) A = 0.026320 B = 0.003186 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.573072 B = 8787.685702 C = 9662.664317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.547 4.547 8 H 0.065 0.935 9 C 0.248 3.752 10 N -0.696 5.696 11 C 0.529 3.471 12 O -0.529 6.529 13 C -0.098 4.098 14 C -0.082 4.082 15 C -0.036 4.036 16 C -0.643 4.643 17 S 2.709 3.291 18 N -1.247 6.247 19 O -0.957 6.957 20 O -0.956 6.956 21 C -0.068 4.068 22 C 0.135 3.865 23 F -0.107 7.107 24 H 0.267 0.733 25 H 0.032 0.968 26 H 0.032 0.968 27 H 0.391 0.609 28 H 0.151 0.849 29 H 0.155 0.845 30 H 0.422 0.578 31 H 0.419 0.581 32 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.794 -17.861 -3.973 22.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.139 4.139 3 Si 0.733 3.267 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.585 4.585 8 H 0.083 0.917 9 C 0.128 3.872 10 N -0.345 5.345 11 C 0.313 3.687 12 O -0.407 6.407 13 C -0.103 4.103 14 C -0.102 4.102 15 C -0.055 4.055 16 C -0.729 4.729 17 S 2.795 3.205 18 N -0.922 5.922 19 O -0.947 6.947 20 O -0.946 6.946 21 C -0.088 4.088 22 C 0.113 3.887 23 F -0.085 7.085 24 H 0.077 0.923 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.226 0.774 28 H 0.169 0.831 29 H 0.172 0.828 30 H 0.252 0.748 31 H 0.246 0.754 32 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 12.996 -18.205 -3.026 22.572 hybrid contribution 0.157 1.531 -0.696 1.689 sum 13.153 -16.674 -3.722 21.561 Atomic orbital electron populations 1.69976 1.06147 1.27420 1.48484 1.24956 0.94938 0.99557 0.94498 0.86326 0.79781 0.82754 0.77843 1.19578 1.20724 1.20715 1.21210 0.93309 0.90225 1.53789 0.91720 1.19248 0.88190 0.81562 0.98220 1.46463 1.11518 1.05661 1.70862 1.17988 0.87826 0.83265 0.79646 1.90836 1.15486 1.84528 1.49841 1.20932 0.95449 0.93744 1.00149 1.21500 0.90944 1.00760 0.96989 1.20930 1.01128 0.90175 0.93286 1.30731 1.09639 1.15636 1.16910 1.01485 0.73187 0.73448 0.72356 1.53099 1.26856 1.83588 1.28630 1.93615 1.44140 1.80525 1.76395 1.93633 1.75315 1.49239 1.76369 1.20882 0.91043 0.99973 0.96872 1.17694 0.78740 0.92259 0.99991 1.91642 1.29635 1.94454 1.92776 0.92337 0.95014 0.95011 0.77440 0.83129 0.82775 0.74767 0.75397 0.82292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.37 13.29 55.43 0.74 -24.63 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.91 20.21 29.54 -169.99 -5.02 15.19 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.55 -14.26 9.28 -34.44 -0.32 -14.58 16 8 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 9 C 0.25 6.33 5.43 -5.19 -0.03 6.30 16 10 N -0.70 -14.00 5.50 -62.48 -0.34 -14.35 16 11 C 0.53 10.53 7.77 -12.40 -0.10 10.43 16 12 O -0.53 -12.74 15.34 5.31 0.08 -12.66 16 13 C -0.10 -1.48 5.88 -104.92 -0.62 -2.10 16 14 C -0.08 -0.92 9.54 -39.19 -0.37 -1.30 16 15 C -0.04 -0.33 9.50 -39.64 -0.38 -0.71 16 16 C -0.64 -5.91 5.98 -39.51 -0.24 -6.15 16 17 S 2.71 21.12 6.28 -107.50 -0.67 20.44 16 18 N -1.25 -4.80 9.52 60.35 0.57 -4.22 16 19 O -0.96 -10.03 17.27 -57.17 -0.99 -11.02 16 20 O -0.96 -10.57 17.26 -57.17 -0.99 -11.56 16 21 C -0.07 -0.73 9.48 -39.56 -0.38 -1.10 16 22 C 0.13 1.94 7.29 -38.96 -0.28 1.65 16 23 F -0.11 -1.81 15.55 2.25 0.04 -1.78 16 24 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 25 H 0.03 0.90 8.14 -51.92 -0.42 0.47 16 26 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.39 6.46 6.35 -40.82 -0.26 6.20 16 28 H 0.15 1.38 6.41 -52.48 -0.34 1.05 16 29 H 0.15 1.03 7.60 -52.49 -0.40 0.63 16 30 H 0.42 0.92 8.96 -34.46 -0.31 0.61 16 31 H 0.42 0.84 8.96 -34.47 -0.31 0.53 16 32 H 0.16 1.38 7.60 -52.48 -0.40 0.98 16 LS Contribution 304.54 15.07 4.59 4.59 Total: -1.00 -36.91 304.54 -7.19 -44.10 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -2.39 Total: 1.80 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: -2.80 Total: -5.90 kcal Atomic # 7 Polarization: -44.17 SS G_CDS: 0.97 Total: -43.20 kcal Atomic # 8 Polarization: -33.35 SS G_CDS: -1.89 Total: -35.24 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.04 Total: -1.78 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Atomic # 16 Polarization: 21.12 SS G_CDS: -0.67 Total: 20.44 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -36.91 -7.19 -44.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787619054.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.538 kcal (2) G-P(sol) polarization free energy of solvation -36.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds