Wall clock time and date at job start Tue Mar 31 2020 03:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47057 * 2 1 4 4 C 1.46496 * 119.99931 * 269.99770 * 3 2 1 5 5 C 1.50699 * 109.47350 * 269.99854 * 4 3 2 6 6 H 1.07993 * 120.00233 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00072 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99921 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00141 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47030 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46976 * 120.00041 * 9 7 5 12 12 H 1.48495 * 109.47041 * 239.99735 * 9 7 5 13 13 C 1.34773 * 120.00095 * 90.00224 * 3 2 1 14 14 S 1.71193 * 120.00322 * 179.72640 * 13 3 2 15 15 N 1.34784 * 119.99935 * 359.97438 * 13 3 2 16 16 C 1.46499 * 119.99893 * 179.72905 * 15 13 3 17 17 C 1.53003 * 109.46708 * 180.02562 * 16 15 13 18 18 N 1.46902 * 109.46852 * 180.02562 * 17 16 15 19 19 C 1.47019 * 110.99617 * 293.62965 * 18 17 16 20 20 C 1.53097 * 109.25542 * 177.60983 * 19 18 17 21 21 O 1.43015 * 109.25979 * 56.84977 * 20 19 18 22 22 C 1.43011 * 113.74017 * 301.32827 * 21 20 19 23 23 C 1.47014 * 111.00024 * 169.99752 * 18 17 16 24 24 H 1.09003 * 109.46985 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47015 * 299.99823 * 1 2 3 26 26 H 1.09006 * 109.47180 * 59.99911 * 1 2 3 27 27 H 1.09004 * 109.47454 * 240.00015 * 2 1 3 28 28 H 1.08998 * 109.47439 * 120.00096 * 2 1 3 29 29 H 1.09003 * 109.47023 * 30.00279 * 4 3 2 30 30 H 1.09002 * 109.46896 * 149.99872 * 4 3 2 31 31 H 0.96997 * 119.99945 * 180.02562 * 8 7 5 32 32 H 0.97005 * 119.99846 * 359.72693 * 15 13 3 33 33 H 1.08998 * 109.47134 * 299.99552 * 16 15 13 34 34 H 1.08994 * 109.47397 * 59.99843 * 16 15 13 35 35 H 1.09000 * 109.47195 * 299.99415 * 17 16 15 36 36 H 1.08994 * 109.47584 * 59.99634 * 17 16 15 37 37 H 1.08998 * 109.50588 * 297.54420 * 19 18 17 38 38 H 1.08999 * 109.50896 * 57.67699 * 19 18 17 39 39 H 1.08998 * 109.50889 * 296.91299 * 20 19 18 40 40 H 1.09008 * 109.54080 * 176.80693 * 20 19 18 41 41 H 1.09007 * 109.50370 * 298.73944 * 22 21 20 42 42 H 1.08993 * 109.54751 * 178.62589 * 22 21 20 43 43 H 1.09000 * 109.50773 * 302.32489 * 23 18 17 44 44 H 1.09008 * 109.50498 * 62.41010 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8351 -1.7037 6 1 4.3426 1.2304 -1.0962 7 6 4.1491 2.3897 -2.8779 8 7 3.3491 3.1257 -3.6181 9 14 5.9131 2.0957 -3.4175 10 1 6.6005 1.2397 -2.4175 11 1 5.9201 1.4164 -4.7381 12 1 6.6208 3.3966 -3.5264 13 6 2.2430 2.0166 1.1672 14 16 2.8203 3.6283 1.1672 15 7 2.0179 1.3814 2.3344 16 6 2.2678 2.0700 3.6031 17 6 1.9351 1.1330 4.7660 18 7 2.1851 1.8236 6.0382 19 6 3.6187 2.0965 6.2167 20 6 3.8271 2.8678 7.5227 21 8 3.2802 2.1140 8.6081 22 6 1.8855 1.8308 8.4673 23 6 1.6573 1.0490 7.1708 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.5817 1.6877 -2.0284 30 1 2.0955 3.1411 -1.1384 31 1 3.6749 3.5156 -4.4443 32 1 1.6904 0.4683 2.3344 33 1 3.3171 2.3593 3.6589 34 1 1.6417 2.9602 3.6628 35 1 0.8858 0.8432 4.7105 36 1 2.5614 0.2430 4.7061 37 1 4.1659 1.1548 6.2588 38 1 3.9827 2.6927 5.3799 39 1 3.3241 3.8327 7.4598 40 1 4.8932 3.0232 7.6882 41 1 1.3260 2.7657 8.4317 42 1 1.5467 1.2359 9.3154 43 1 0.5896 0.8805 7.0305 44 1 2.1728 0.0902 7.2277 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000920992819.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:29 Heat of formation + Delta-G solvation = -15.162249 kcal Electronic energy + Delta-G solvation = -22722.453423 eV Core-core repulsion = 19415.462019 eV Total energy + Delta-G solvation = -3306.991405 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.157 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.93221 -38.95344 -36.71928 -34.99533 -32.76839 -31.54202 -31.11525 -29.98405 -27.40963 -26.00455 -24.40845 -24.11558 -23.14394 -22.21587 -20.80361 -20.34398 -17.60906 -17.17245 -16.51658 -16.44179 -16.29636 -15.76257 -15.35424 -15.11914 -14.76860 -14.50908 -14.29891 -14.19673 -13.79920 -13.60119 -13.15812 -12.68554 -12.32461 -12.25437 -12.19589 -12.02757 -11.70175 -11.47876 -11.34167 -11.12036 -10.95724 -10.89131 -10.68272 -10.63066 -10.19634 -10.08332 -9.97738 -9.59783 -8.76703 -8.43107 -8.19275 -6.90951 -6.37041 -6.03063 -4.06312 2.23168 2.68127 3.16472 3.31941 3.40794 3.43243 3.55916 3.68427 3.91220 4.46288 4.47787 4.60189 4.64685 4.80626 4.86391 4.93476 4.98409 5.02914 5.18852 5.23252 5.23931 5.33021 5.34821 5.38898 5.45291 5.56308 5.66131 5.67674 5.84512 5.90643 5.96310 6.19826 6.41486 6.57796 6.58311 6.72050 6.83522 7.19556 7.51322 7.59760 7.92706 8.02392 8.18267 8.92403 9.56210 11.05618 Molecular weight = 301.16amu Principal moments of inertia in cm(-1) A = 0.020546 B = 0.003238 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.500199 B = 8644.639408 C = 9393.699047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.090 3.910 3 N -0.541 5.541 4 C 0.238 3.762 5 C -0.516 4.516 6 H 0.055 0.945 7 C 0.066 3.934 8 N -0.891 5.891 9 Si 0.899 3.101 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.281 1.281 13 C 0.563 3.437 14 S -0.656 6.656 15 N -0.707 5.707 16 C 0.135 3.865 17 C 0.045 3.955 18 N -0.529 5.529 19 C 0.011 3.989 20 C 0.064 3.936 21 O -0.388 6.388 22 C 0.064 3.936 23 C 0.019 3.981 24 H 0.066 0.934 25 H 0.052 0.948 26 H 0.068 0.932 27 H 0.097 0.903 28 H 0.062 0.938 29 H 0.036 0.964 30 H 0.078 0.922 31 H 0.263 0.737 32 H 0.387 0.613 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.039 0.961 37 H 0.044 0.956 38 H 0.098 0.902 39 H 0.063 0.937 40 H 0.100 0.900 41 H 0.061 0.939 42 H 0.097 0.903 43 H 0.087 0.913 44 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.260 -9.036 20.149 22.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.037 4.037 3 N -0.247 5.247 4 C 0.120 3.880 5 C -0.556 4.556 6 H 0.074 0.926 7 C -0.136 4.136 8 N -0.530 5.530 9 Si 0.727 3.273 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.207 1.207 13 C 0.204 3.796 14 S -0.528 6.528 15 N -0.343 5.343 16 C 0.010 3.990 17 C -0.084 4.084 18 N -0.255 5.255 19 C -0.117 4.117 20 C -0.013 4.013 21 O -0.306 6.306 22 C -0.013 4.013 23 C -0.110 4.110 24 H 0.085 0.915 25 H 0.071 0.929 26 H 0.087 0.913 27 H 0.115 0.885 28 H 0.080 0.920 29 H 0.054 0.946 30 H 0.096 0.904 31 H 0.073 0.927 32 H 0.225 0.775 33 H 0.098 0.902 34 H 0.108 0.892 35 H 0.099 0.901 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.116 0.884 39 H 0.081 0.919 40 H 0.118 0.882 41 H 0.079 0.921 42 H 0.115 0.885 43 H 0.105 0.895 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -6.033 -7.504 20.079 22.268 hybrid contribution 0.786 -2.238 -0.706 2.475 sum -5.247 -9.742 19.372 22.310 Atomic orbital electron populations 1.22199 0.95498 1.02078 1.02981 1.21716 0.94506 0.84118 1.03354 1.47848 1.57992 1.12196 1.06658 1.19918 0.97134 0.95719 0.75246 1.21167 0.96144 1.32138 1.06105 0.92639 1.24829 0.97704 0.94755 0.96321 1.69930 1.35550 1.33214 1.14268 0.86427 0.84732 0.78121 0.78019 1.19960 1.21177 1.20711 1.22088 0.82708 0.93767 0.81083 1.93154 1.65256 0.99687 1.94654 1.44821 1.68522 1.16380 1.04583 1.21379 1.03465 0.95264 0.78887 1.22266 1.01656 0.95312 0.89157 1.62038 1.15793 1.46289 1.01371 1.22944 0.88148 1.00649 0.99997 1.22696 0.99510 0.94236 0.84885 1.87979 1.23689 1.74653 1.44318 1.22649 0.82753 0.99545 0.96368 1.22798 1.01093 0.95618 0.91454 0.91512 0.92872 0.91317 0.88458 0.91958 0.94627 0.90405 0.92741 0.77549 0.90150 0.89153 0.90127 0.94230 0.93799 0.88404 0.91854 0.88229 0.92052 0.88498 0.89514 0.93919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.01 10.24 37.16 0.38 -1.63 16 2 C 0.09 1.30 5.89 -4.04 -0.02 1.27 16 3 N -0.54 -10.75 2.46 -177.08 -0.43 -11.19 16 4 C 0.24 5.98 4.92 -5.20 -0.03 5.95 16 5 C -0.52 -14.26 9.39 -34.44 -0.32 -14.59 16 6 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 7 C 0.07 1.88 5.46 -17.82 -0.10 1.78 16 8 N -0.89 -26.22 13.29 55.43 0.74 -25.48 16 9 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 10 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 13 C 0.56 11.14 7.70 -86.91 -0.67 10.48 16 14 S -0.66 -16.22 27.17 -107.50 -2.92 -19.14 16 15 N -0.71 -10.17 5.42 -62.03 -0.34 -10.50 16 16 C 0.13 1.75 5.07 -4.04 -0.02 1.73 16 17 C 0.04 0.42 5.07 -3.82 -0.02 0.40 16 18 N -0.53 -5.06 4.73 -234.30 -1.11 -6.17 16 19 C 0.01 0.10 5.44 -3.71 -0.02 0.08 16 20 C 0.06 0.57 7.01 37.21 0.26 0.83 16 21 O -0.39 -3.91 10.83 -35.23 -0.38 -4.29 16 22 C 0.06 0.50 7.01 37.21 0.26 0.76 16 23 C 0.02 0.15 5.64 -3.71 -0.02 0.12 16 24 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.10 1.47 8.07 -51.93 -0.42 1.05 16 28 H 0.06 0.73 6.37 -51.93 -0.33 0.40 16 29 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 30 H 0.08 2.24 6.59 -51.93 -0.34 1.89 16 31 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 32 H 0.39 4.41 6.21 -40.82 -0.25 4.15 16 33 H 0.08 1.18 6.37 -51.93 -0.33 0.85 16 34 H 0.09 1.33 7.99 -51.93 -0.41 0.92 16 35 H 0.08 0.66 8.04 -51.93 -0.42 0.25 16 36 H 0.04 0.36 8.12 -51.93 -0.42 -0.06 16 37 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.10 1.01 6.38 -51.93 -0.33 0.68 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.10 0.75 8.14 -51.92 -0.42 0.33 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.09 0.56 8.09 -51.93 -0.42 0.14 16 44 H 0.04 0.34 8.14 -51.92 -0.42 -0.08 16 LS Contribution 363.25 15.07 5.47 5.47 Total: -1.00 -34.23 363.25 -11.76 -45.98 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -7.45 Total: 1.18 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: -0.32 Total: 7.19 kcal Atomic # 7 Polarization: -52.20 SS G_CDS: -1.14 Total: -53.34 kcal Atomic # 8 Polarization: -3.91 SS G_CDS: -0.38 Total: -4.29 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Atomic # 16 Polarization: -16.22 SS G_CDS: -2.92 Total: -19.14 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.23 -11.76 -45.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000920992819.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.823 kcal (2) G-P(sol) polarization free energy of solvation -34.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds