Wall clock time and date at job start Tue Mar 31 2020 03:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.46951 * 2 1 4 4 H 1.08999 * 109.46834 * 55.00160 * 3 2 1 5 5 F 1.39905 * 109.47042 * 295.00171 * 3 2 1 6 6 C 1.50694 * 109.47130 * 175.00382 * 3 2 1 7 7 O 1.21282 * 120.00385 * 44.04496 * 6 3 2 8 8 N 1.34777 * 119.99917 * 224.32478 * 6 3 2 9 9 C 1.47074 * 120.88445 * 173.98262 * 8 6 3 10 10 C 1.53694 * 108.28222 * 128.74933 * 9 8 6 11 11 N 1.46906 * 109.25384 * 54.08358 * 10 9 8 12 12 C 1.46903 * 110.99676 * 172.61204 * 11 10 9 13 13 C 1.50700 * 109.46948 * 294.29354 * 12 11 10 14 14 O 1.21290 * 120.00104 * 0.02562 * 13 12 11 15 15 N 1.34780 * 120.00209 * 179.97438 * 13 12 11 16 16 C 1.37091 * 119.99927 * 180.02562 * 15 13 12 17 17 H 1.07990 * 120.00731 * 0.02562 * 16 15 13 18 18 C 1.38956 * 119.99380 * 180.02562 * 16 15 13 19 19 N 1.31405 * 120.00445 * 0.02562 * 18 16 15 20 20 Si 1.86810 * 119.99621 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46773 * 90.00193 * 20 18 16 22 22 H 1.48499 * 109.46659 * 210.00025 * 20 18 16 23 23 H 1.48493 * 109.47000 * 329.99856 * 20 18 16 24 24 C 1.46896 * 111.26627 * 296.75442 * 11 10 9 25 25 C 1.47078 * 120.88004 * 354.25408 * 8 6 3 26 26 H 1.09006 * 109.47486 * 299.99688 * 1 2 3 27 27 H 1.09000 * 109.47741 * 59.99841 * 1 2 3 28 28 H 1.09002 * 109.47111 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47165 * 240.00398 * 2 1 3 30 30 H 1.08998 * 109.47305 * 119.99860 * 2 1 3 31 31 H 1.09005 * 109.62939 * 248.52287 * 9 8 6 32 32 H 1.09006 * 109.62883 * 9.09706 * 9 8 6 33 33 H 1.08998 * 109.64738 * 294.08202 * 10 9 8 34 34 H 1.09005 * 109.42594 * 173.94629 * 10 9 8 35 35 H 1.08998 * 109.47440 * 54.30015 * 12 11 10 36 36 H 1.09001 * 109.46734 * 174.30403 * 12 11 10 37 37 H 0.96998 * 119.99204 * 0.02562 * 15 13 12 38 38 H 0.97001 * 119.99938 * 180.02562 * 19 18 16 39 39 H 1.08996 * 109.49883 * 303.14812 * 24 11 10 40 40 H 1.09000 * 109.49253 * 183.06721 * 24 11 10 41 41 H 1.09000 * 109.62899 * 350.89815 * 25 8 6 42 42 H 1.08998 * 109.63382 * 111.48139 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 0.8418 5 9 1.6697 2.0680 -1.1954 6 6 3.5418 1.4444 0.1237 7 8 4.2053 0.6693 -0.5320 8 7 4.1474 2.3036 0.9673 9 6 5.5976 2.2350 1.2022 10 6 6.1863 3.6397 0.9967 11 7 5.4646 4.5965 1.8464 12 6 6.1063 5.9176 1.8139 13 6 7.4727 5.8279 2.4431 14 8 7.8729 4.7677 2.8755 15 7 8.2506 6.9256 2.5243 16 6 9.4938 6.8438 3.0962 17 1 9.8502 5.8999 3.4813 18 6 10.2955 7.9757 3.1804 19 7 9.8618 9.1244 2.7124 20 14 11.9893 7.8645 3.9604 21 1 12.9937 7.5346 2.9175 22 1 12.3333 9.1674 4.5843 23 1 11.9873 6.8034 4.9991 24 6 4.0499 4.6888 1.4620 25 6 3.3746 3.3309 1.6819 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 5.7879 1.9004 2.2220 32 1 6.0506 1.5397 0.4953 33 1 6.0826 3.9313 -0.0484 34 1 7.2414 3.6342 1.2703 35 1 6.2032 6.2491 0.7801 36 1 5.4970 6.6311 2.3687 37 1 7.9306 7.7733 2.1781 38 1 10.4216 9.9144 2.7709 39 1 3.9759 4.9657 0.4104 40 1 3.5555 5.4441 2.0729 41 1 2.3570 3.3606 1.2923 42 1 3.3552 3.0998 2.7469 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113201748.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:16 Heat of formation + Delta-G solvation = -131.274121 kcal Electronic energy + Delta-G solvation = -24906.098773 eV Core-core repulsion = 21027.859204 eV Total energy + Delta-G solvation = -3878.239569 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 301.159 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.98679 -41.36243 -40.27415 -38.72566 -36.12793 -35.50048 -34.97604 -33.27758 -32.33004 -30.47263 -28.66601 -27.22436 -25.50388 -24.87824 -23.24263 -22.08370 -21.05615 -20.23049 -19.87682 -18.95376 -17.96219 -17.59152 -17.24129 -16.67548 -16.59932 -16.44751 -16.06627 -15.89309 -15.57686 -15.37694 -15.26587 -15.24329 -14.75465 -14.22584 -13.96167 -13.90074 -13.57197 -13.38782 -13.17723 -13.00844 -12.87497 -12.78901 -12.49614 -12.41119 -12.31944 -12.19670 -12.09880 -12.02069 -11.73975 -11.45677 -10.86443 -10.35752 -10.00767 -9.88213 -9.27025 -8.46051 -5.94167 1.20279 1.37861 1.41930 1.54240 1.65906 2.06356 2.28204 2.68563 3.06628 3.20976 3.35233 3.44046 3.54541 3.77425 3.88632 3.93574 4.08360 4.16495 4.26477 4.38681 4.39851 4.47889 4.50582 4.51360 4.56572 4.66575 4.74294 4.78648 4.85343 5.00974 5.04526 5.14356 5.27084 5.35683 5.41871 5.76813 6.01006 6.10622 6.20336 6.61378 6.81235 7.14039 7.57799 8.13286 8.71295 Molecular weight = 301.16amu Principal moments of inertia in cm(-1) A = 0.043689 B = 0.002632 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.734111 B =10633.785974 C =10927.567162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.140 4.140 3 C 0.082 3.918 4 H 0.144 0.856 5 F -0.201 7.201 6 C 0.486 3.514 7 O -0.571 6.571 8 N -0.603 5.603 9 C 0.127 3.873 10 C 0.047 3.953 11 N -0.527 5.527 12 C 0.058 3.942 13 C 0.441 3.559 14 O -0.613 6.613 15 N -0.575 5.575 16 C -0.330 4.330 17 H 0.079 0.921 18 C -0.014 4.014 19 N -0.921 5.921 20 Si 0.991 3.009 21 H -0.273 1.273 22 H -0.271 1.271 23 H -0.273 1.273 24 C 0.036 3.964 25 C 0.104 3.896 26 H 0.077 0.923 27 H 0.056 0.944 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.025 0.975 34 H 0.078 0.922 35 H 0.062 0.938 36 H 0.121 0.879 37 H 0.396 0.604 38 H 0.277 0.723 39 H 0.039 0.961 40 H 0.119 0.881 41 H 0.124 0.876 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.034 -9.773 -3.047 23.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.178 4.178 3 C 0.044 3.956 4 H 0.161 0.839 5 F -0.182 7.182 6 C 0.273 3.727 7 O -0.449 6.449 8 N -0.335 5.335 9 C 0.004 3.996 10 C -0.081 4.081 11 N -0.253 5.253 12 C -0.072 4.072 13 C 0.228 3.772 14 O -0.499 6.499 15 N -0.212 5.212 16 C -0.459 4.459 17 H 0.097 0.903 18 C -0.214 4.214 19 N -0.562 5.562 20 Si 0.815 3.185 21 H -0.199 1.199 22 H -0.196 1.196 23 H -0.197 1.197 24 C -0.092 4.092 25 C -0.017 4.017 26 H 0.096 0.904 27 H 0.075 0.925 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.111 0.889 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.043 0.957 34 H 0.097 0.903 35 H 0.080 0.920 36 H 0.138 0.862 37 H 0.230 0.770 38 H 0.086 0.914 39 H 0.057 0.943 40 H 0.137 0.863 41 H 0.142 0.858 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -20.329 -10.838 -2.654 23.190 hybrid contribution 1.285 0.956 -0.892 1.833 sum -19.044 -9.882 -3.546 21.746 Atomic orbital electron populations 1.21765 0.92154 1.03514 1.03155 1.22008 0.98798 0.92554 1.04470 1.21983 0.89531 0.97767 0.86344 0.83854 1.92866 1.91873 1.84146 1.49335 1.21669 0.91809 0.80199 0.78982 1.90698 1.67390 1.41498 1.45349 1.48437 1.08866 1.32884 1.43358 1.21648 0.79599 0.96255 1.02131 1.22503 0.99790 0.92273 0.93571 1.61505 1.02585 1.07234 1.53928 1.21742 0.93004 0.92176 1.00325 1.20766 0.88120 0.84047 0.84230 1.90464 1.75819 1.29951 1.53640 1.41943 1.15165 1.10442 1.53697 1.19633 0.92949 0.96694 1.36648 0.90283 1.26013 1.03342 0.94193 0.97805 1.69665 1.39503 1.00337 1.46689 0.84955 0.77355 0.77852 0.78355 1.19863 1.19589 1.19733 1.22690 0.87504 0.98747 1.00235 1.22309 0.95509 0.85130 0.98746 0.90365 0.92490 0.90834 0.91671 0.88948 0.90198 0.90070 0.95662 0.90343 0.91974 0.86152 0.77040 0.91365 0.94295 0.86253 0.85829 0.88372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.83 71.98 0.71 -0.69 16 2 C -0.14 -2.03 5.40 30.59 0.17 -1.87 16 3 C 0.08 1.35 3.18 29.85 0.09 1.45 16 4 H 0.14 1.17 5.77 -2.39 -0.01 1.16 16 5 F -0.20 -4.19 16.75 44.97 0.75 -3.43 16 6 C 0.49 11.98 7.05 87.66 0.62 12.60 16 7 O -0.57 -19.07 16.04 -3.04 -0.05 -19.12 16 8 N -0.60 -13.93 3.00 -817.05 -2.45 -16.38 16 9 C 0.13 3.65 6.64 86.50 0.57 4.22 16 10 C 0.05 1.55 5.27 86.54 0.46 2.00 16 11 N -0.53 -15.59 4.37 -898.86 -3.93 -19.52 16 12 C 0.06 1.89 5.45 85.56 0.47 2.36 16 13 C 0.44 20.23 7.44 87.66 0.65 20.88 16 14 O -0.61 -32.55 13.91 -3.06 -0.04 -32.59 16 15 N -0.57 -28.86 5.29 -306.99 -1.62 -30.48 16 16 C -0.33 -18.45 9.68 84.04 0.81 -17.64 16 17 H 0.08 4.72 7.16 -2.92 -0.02 4.70 16 18 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 19 N -0.92 -49.29 13.05 21.66 0.28 -49.01 16 20 Si 0.99 42.74 29.55 68.60 2.03 44.76 16 21 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 22 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 23 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 24 C 0.04 0.70 5.62 86.39 0.49 1.18 16 25 C 0.10 1.62 6.31 86.35 0.54 2.16 16 26 H 0.08 0.46 8.14 -2.38 -0.02 0.44 16 27 H 0.06 0.62 7.94 -2.39 -0.02 0.60 16 28 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.06 1.23 8.04 -2.39 -0.02 1.22 16 30 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.08 2.33 8.14 -2.38 -0.02 2.31 16 32 H 0.08 2.52 7.04 -2.38 -0.02 2.51 16 33 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.08 3.18 5.76 -2.38 -0.01 3.17 16 35 H 0.06 1.87 8.12 -2.39 -0.02 1.85 16 36 H 0.12 3.22 7.97 -2.39 -0.02 3.20 16 37 H 0.40 18.86 7.90 -92.71 -0.73 18.13 16 38 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 39 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.12 1.67 7.99 -2.39 -0.02 1.65 16 41 H 0.12 1.01 5.57 -2.39 -0.01 1.00 16 42 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -73.28 345.21 1.32 -71.96 By element: Atomic # 1 Polarization: 27.12 SS G_CDS: 0.31 Total: 27.43 kcal Atomic # 6 Polarization: 20.34 SS G_CDS: 6.05 Total: 26.38 kcal Atomic # 7 Polarization: -107.67 SS G_CDS: -7.72 Total: -115.39 kcal Atomic # 8 Polarization: -51.63 SS G_CDS: -0.09 Total: -51.72 kcal Atomic # 9 Polarization: -4.19 SS G_CDS: 0.75 Total: -3.43 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.76 kcal Total: -73.28 1.32 -71.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113201748.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.312 kcal (2) G-P(sol) polarization free energy of solvation -73.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds