Wall clock time and date at job start Tue Mar 31 2020 03:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38674 * 119.27358 * 2 1 4 4 C 1.38015 * 119.62477 * 179.77017 * 3 2 1 5 5 C 1.41000 * 118.27771 * 0.49408 * 4 3 2 6 6 C 1.41024 * 120.70299 * 179.73087 * 5 4 3 7 7 H 1.08001 * 119.99456 * 204.91655 * 6 5 4 8 8 C 1.39944 * 119.99993 * 24.91680 * 6 5 4 9 9 N 1.30865 * 120.00097 * 14.47819 * 8 6 5 10 10 Si 1.86801 * 119.99824 * 194.48610 * 8 6 5 11 11 H 1.48500 * 109.47258 * 59.99518 * 10 8 6 12 12 H 1.48505 * 109.47266 * 179.97438 * 10 8 6 13 13 H 1.48495 * 109.46991 * 299.99689 * 10 8 6 14 14 C 1.41701 * 118.59215 * 359.74847 * 5 4 3 15 15 N 1.38095 * 119.90981 * 180.02562 * 14 5 4 16 16 C 1.46500 * 120.00392 * 179.97438 * 15 14 5 17 17 C 1.52993 * 109.47063 * 180.02562 * 16 15 14 18 18 O 1.42898 * 109.47584 * 65.00361 * 17 16 15 19 19 P 1.60998 * 122.99905 * 180.02562 * 18 17 16 20 20 O 1.47992 * 109.47333 * 304.99494 * 19 18 17 21 21 O 1.61002 * 109.47246 * 64.99988 * 19 18 17 22 22 O 1.61004 * 109.46962 * 184.99264 * 19 18 17 23 23 N 1.31966 * 119.27237 * 180.27316 * 2 1 3 24 24 H 1.09001 * 109.46825 * 269.72868 * 1 2 3 25 25 H 1.08995 * 109.47574 * 29.72523 * 1 2 3 26 26 H 1.09006 * 109.47183 * 149.72878 * 1 2 3 27 27 H 1.07994 * 120.19211 * 0.02562 * 3 2 1 28 28 H 1.07994 * 120.85839 * 180.22194 * 4 3 2 29 29 H 0.96999 * 119.99800 * 180.02562 * 9 8 6 30 30 H 0.96999 * 119.99493 * 359.97438 * 15 14 5 31 31 H 1.09005 * 109.46756 * 300.00257 * 16 15 14 32 32 H 1.08999 * 109.47306 * 59.99797 * 16 15 14 33 33 H 1.09006 * 109.46780 * 185.00052 * 17 16 15 34 34 H 1.08999 * 109.46930 * 304.99386 * 17 16 15 35 35 H 0.96697 * 114.00106 * 59.99495 * 21 19 18 36 36 H 0.96692 * 114.00152 * 179.97438 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1851 1.2096 0.0000 4 6 3.5652 1.2181 0.0048 5 6 4.2408 -0.0195 -0.0011 6 6 5.6502 -0.0705 -0.0023 7 1 6.1588 -0.9360 -0.4005 8 6 6.3895 1.0004 0.5125 9 7 5.7995 1.9113 1.2438 10 14 8.2186 1.1296 0.1557 11 1 8.4316 1.2188 -1.3113 12 1 8.7659 2.3454 0.8097 13 1 8.9122 -0.0722 0.6844 14 6 3.4737 -1.2109 -0.0062 15 7 4.1073 -2.4378 -0.0115 16 6 3.3162 -3.6709 -0.0163 17 6 4.2549 -4.8790 -0.0210 18 8 4.9968 -4.9107 1.1999 19 15 6.0833 -6.0501 1.5364 20 8 5.4538 -7.3838 1.4133 21 8 7.3138 -5.9401 0.5039 22 8 6.6244 -5.8486 3.0393 23 7 2.1523 -1.1511 -0.0055 24 1 -0.3633 -0.0049 1.0277 25 1 -0.3634 0.8924 -0.5095 26 1 -0.3634 -0.8876 -0.5181 27 1 1.6365 2.1398 0.0004 28 1 4.1134 2.1485 0.0085 29 1 6.3120 2.6537 1.6003 30 1 5.0763 -2.4832 -0.0121 31 1 2.6879 -3.7028 0.8739 32 1 2.6872 -3.6956 -0.9061 33 1 3.6693 -5.7937 -0.1141 34 1 4.9432 -4.8010 -0.8626 35 1 7.7742 -5.0902 0.5299 36 1 7.2836 -6.5018 3.3109 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). P: (AM1): M.J.S.DEWAR, C. JIE, J. MOL. STRUCT. (THEOCHEM) 187,1 (1989) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157795984.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:50 Heat of formation + Delta-G solvation = -244.549288 kcal Electronic energy + Delta-G solvation = -22249.803564 eV Core-core repulsion = 18616.722317 eV Total energy + Delta-G solvation = -3633.081247 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 302.091 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.70027 -37.62088 -36.84793 -36.15659 -34.73971 -34.13972 -33.12420 -31.10705 -30.32800 -28.43837 -27.33896 -24.05975 -22.70451 -20.81134 -20.56599 -19.91231 -19.07767 -17.70249 -17.29351 -16.43021 -16.02789 -15.71796 -15.29210 -15.14541 -14.77070 -14.23003 -13.89794 -13.59167 -13.41844 -13.09351 -12.95723 -12.72813 -12.65917 -12.48189 -11.98188 -11.68673 -11.54500 -11.48217 -11.24299 -11.16643 -10.88278 -10.82944 -10.59501 -10.57190 -10.48669 -9.83908 -9.33761 -8.90970 -8.11928 -7.90191 -6.83846 -6.53942 -4.27714 1.23604 2.66743 2.96983 2.98349 3.05613 3.18186 3.59853 3.83711 4.28768 4.57247 4.62214 4.92847 5.08624 5.33929 5.60079 5.65142 5.83104 6.05893 6.12447 6.25187 6.42577 6.42862 6.46082 6.55749 6.76212 6.76622 6.90814 7.06487 7.18712 7.59669 7.62206 7.74884 7.95593 8.23280 8.45815 8.60308 8.73628 8.94628 9.74817 10.16208 Molecular weight = 302.09amu Principal moments of inertia in cm(-1) A = 0.011623 B = 0.005186 C = 0.003788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.501233 B = 5398.274603 C = 7390.472770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.029 3.971 3 C -0.187 4.187 4 C -0.121 4.121 5 C 0.027 3.973 6 C -0.457 4.457 7 H 0.071 0.929 8 C 0.073 3.927 9 N -0.800 5.800 10 Si 0.908 3.092 11 H -0.265 1.265 12 H -0.278 1.278 13 H -0.269 1.269 14 C 0.308 3.692 15 N -0.727 5.727 16 C 0.141 3.859 17 C 0.109 3.891 18 O -0.737 6.737 19 P 2.312 2.688 20 O -1.021 7.021 21 O -0.862 6.862 22 O -0.861 6.861 23 N -0.529 5.529 24 H 0.049 0.951 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.094 0.906 28 H 0.128 0.872 29 H 0.280 0.720 30 H 0.401 0.599 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.065 0.935 35 H 0.427 0.573 36 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.212 -8.676 -0.478 9.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.105 4.105 3 C -0.210 4.210 4 C -0.147 4.147 5 C 0.021 3.979 6 C -0.488 4.488 7 H 0.089 0.911 8 C -0.143 4.143 9 N -0.426 5.426 10 Si 0.733 3.267 11 H -0.190 1.190 12 H -0.203 1.203 13 H -0.194 1.194 14 C 0.070 3.930 15 N -0.368 5.368 16 C 0.016 3.984 17 C 0.036 3.964 18 O -0.761 6.761 19 P 2.595 2.405 20 O -1.121 7.121 21 O -0.778 6.778 22 O -0.781 6.781 23 N -0.248 5.248 24 H 0.068 0.932 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.113 0.887 28 H 0.146 0.854 29 H 0.091 0.909 30 H 0.237 0.763 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.102 0.898 34 H 0.083 0.917 35 H 0.282 0.718 36 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges 2.995 -9.236 -0.401 9.718 hybrid contribution 2.500 1.311 0.197 2.829 sum 5.494 -7.925 -0.203 9.646 Atomic orbital electron populations 1.20297 0.91757 1.00709 1.00453 1.19979 0.94323 0.87995 1.08213 1.21244 0.95398 0.96660 1.07660 1.21408 0.92100 0.98318 1.02864 1.17901 0.93866 0.90097 0.96080 1.19054 0.90783 1.02785 1.36204 0.91069 1.25802 1.00719 0.94968 0.92848 1.69785 1.38331 1.10600 1.23902 0.86387 0.82187 0.78447 0.79694 1.18971 1.20336 1.19380 1.18392 0.87962 0.85446 1.01173 1.43552 1.07224 1.01170 1.84811 1.21096 0.92717 0.82368 1.02235 1.22707 0.93778 1.00731 0.79192 1.87891 1.65419 1.74146 1.48619 0.89068 0.50694 0.52137 0.48564 1.95199 1.79657 1.47513 1.89700 1.88113 1.64042 1.47108 1.78490 1.87645 1.66992 1.65842 1.57574 1.66341 1.08314 1.29899 1.20205 0.93171 0.92901 0.92719 0.88733 0.85421 0.90896 0.76311 0.91653 0.90944 0.89808 0.91724 0.71839 0.70579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.35 10.15 36.01 0.37 -0.98 16 2 C 0.03 0.67 6.79 -82.37 -0.56 0.11 16 3 C -0.19 -4.39 9.69 -39.50 -0.38 -4.77 16 4 C -0.12 -3.08 8.79 -38.62 -0.34 -3.42 16 5 C 0.03 0.70 5.60 -106.47 -0.60 0.11 16 6 C -0.46 -11.21 8.53 -37.89 -0.32 -11.53 16 7 H 0.07 1.60 6.67 -52.49 -0.35 1.25 16 8 C 0.07 1.74 5.23 -17.32 -0.09 1.65 16 9 N -0.80 -19.98 10.83 55.55 0.60 -19.38 16 10 Si 0.91 17.53 29.58 -169.99 -5.03 12.50 16 11 H -0.27 -5.10 7.11 56.52 0.40 -4.69 16 12 H -0.28 -5.35 7.11 56.52 0.40 -4.94 16 13 H -0.27 -4.98 7.11 56.52 0.40 -4.57 16 14 C 0.31 7.40 7.52 -155.02 -1.17 6.23 16 15 N -0.73 -14.49 5.56 -59.97 -0.33 -14.83 16 16 C 0.14 2.33 6.06 -4.05 -0.02 2.30 16 17 C 0.11 1.42 6.58 37.15 0.24 1.66 16 18 O -0.74 -10.04 10.14 -15.13 -0.15 -10.20 16 19 P 2.31 26.24 7.35 -42.89 -0.32 25.93 16 20 O -1.02 -16.90 18.58 -12.94 -0.24 -17.14 16 21 O -0.86 -7.38 14.06 -15.13 -0.21 -7.59 16 22 O -0.86 -8.20 14.06 -15.13 -0.21 -8.42 16 23 N -0.53 -12.62 9.44 -8.11 -0.08 -12.69 16 24 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 25 H 0.05 0.84 8.07 -51.93 -0.42 0.42 16 26 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.09 1.97 8.06 -52.49 -0.42 1.55 16 28 H 0.13 3.34 6.17 -52.49 -0.32 3.02 16 29 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16 30 H 0.40 7.49 6.67 -40.82 -0.27 7.21 16 31 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 33 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.43 1.73 9.11 45.56 0.42 2.14 16 36 H 0.44 1.96 9.11 45.56 0.42 2.38 16 LS Contribution 326.88 15.07 4.93 4.93 Total: -1.00 -35.86 326.88 -6.55 -42.41 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -2.63 Total: 13.12 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: -2.87 Total: -8.64 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: 0.19 Total: -46.90 kcal Atomic # 8 Polarization: -42.52 SS G_CDS: -0.82 Total: -43.34 kcal Atomic # 14 Polarization: 17.53 SS G_CDS: -5.03 Total: 12.50 kcal Atomic # 15 Polarization: 26.24 SS G_CDS: -0.32 Total: 25.93 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -35.86 -6.55 -42.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157795984.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -202.140 kcal (2) G-P(sol) polarization free energy of solvation -35.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -238.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -244.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds