Wall clock time and date at job start Tue Mar 31 2020 03:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38674 * 119.27358 * 2 1 4 4 C 1.38015 * 119.62477 * 179.77017 * 3 2 1 5 5 C 1.41000 * 118.27771 * 0.49408 * 4 3 2 6 6 C 1.41024 * 120.70299 * 179.73087 * 5 4 3 7 7 H 1.08001 * 119.99456 * 204.91655 * 6 5 4 8 8 C 1.39944 * 119.99993 * 24.91680 * 6 5 4 9 9 N 1.30865 * 120.00097 * 14.47819 * 8 6 5 10 10 Si 1.86801 * 119.99824 * 194.48610 * 8 6 5 11 11 H 1.48500 * 109.47258 * 59.99518 * 10 8 6 12 12 H 1.48505 * 109.47266 * 179.97438 * 10 8 6 13 13 H 1.48495 * 109.46991 * 299.99689 * 10 8 6 14 14 C 1.41701 * 118.59215 * 359.74847 * 5 4 3 15 15 N 1.38095 * 119.90981 * 180.02562 * 14 5 4 16 16 C 1.46500 * 120.00392 * 179.97438 * 15 14 5 17 17 C 1.52993 * 109.47063 * 180.02562 * 16 15 14 18 18 O 1.42898 * 109.47584 * 65.00361 * 17 16 15 19 19 P 1.60998 * 122.99905 * 180.02562 * 18 17 16 20 20 O 1.47992 * 109.47333 * 304.99494 * 19 18 17 21 21 O 1.61002 * 109.47246 * 64.99988 * 19 18 17 22 22 O 1.61004 * 109.46962 * 184.99264 * 19 18 17 23 23 N 1.31966 * 119.27237 * 180.27316 * 2 1 3 24 24 H 1.09001 * 109.46825 * 269.72868 * 1 2 3 25 25 H 1.08995 * 109.47574 * 29.72523 * 1 2 3 26 26 H 1.09006 * 109.47183 * 149.72878 * 1 2 3 27 27 H 1.07994 * 120.19211 * 0.02562 * 3 2 1 28 28 H 1.07994 * 120.85839 * 180.22194 * 4 3 2 29 29 H 0.96999 * 119.99800 * 180.02562 * 9 8 6 30 30 H 0.96999 * 119.99493 * 359.97438 * 15 14 5 31 31 H 1.09005 * 109.46756 * 300.00257 * 16 15 14 32 32 H 1.08999 * 109.47306 * 59.99797 * 16 15 14 33 33 H 1.09006 * 109.46780 * 185.00052 * 17 16 15 34 34 H 1.08999 * 109.46930 * 304.99386 * 17 16 15 35 35 H 0.96697 * 114.00106 * 59.99495 * 21 19 18 36 36 H 0.96692 * 114.00152 * 179.97438 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1851 1.2096 0.0000 4 6 3.5652 1.2181 0.0048 5 6 4.2408 -0.0195 -0.0011 6 6 5.6502 -0.0705 -0.0023 7 1 6.1588 -0.9360 -0.4005 8 6 6.3895 1.0004 0.5125 9 7 5.7995 1.9113 1.2438 10 14 8.2186 1.1296 0.1557 11 1 8.4316 1.2188 -1.3113 12 1 8.7659 2.3454 0.8097 13 1 8.9122 -0.0722 0.6844 14 6 3.4737 -1.2109 -0.0062 15 7 4.1073 -2.4378 -0.0115 16 6 3.3162 -3.6709 -0.0163 17 6 4.2549 -4.8790 -0.0210 18 8 4.9968 -4.9107 1.1999 19 15 6.0833 -6.0501 1.5364 20 8 5.4538 -7.3838 1.4133 21 8 7.3138 -5.9401 0.5039 22 8 6.6244 -5.8486 3.0393 23 7 2.1523 -1.1511 -0.0055 24 1 -0.3633 -0.0049 1.0277 25 1 -0.3634 0.8924 -0.5095 26 1 -0.3634 -0.8876 -0.5181 27 1 1.6365 2.1398 0.0004 28 1 4.1134 2.1485 0.0085 29 1 6.3120 2.6537 1.6003 30 1 5.0763 -2.4832 -0.0121 31 1 2.6879 -3.7028 0.8739 32 1 2.6872 -3.6956 -0.9061 33 1 3.6693 -5.7937 -0.1141 34 1 4.9432 -4.8010 -0.8626 35 1 7.7742 -5.0902 0.5299 36 1 7.2836 -6.5018 3.3109 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). P: (AM1): M.J.S.DEWAR, C. JIE, J. MOL. STRUCT. (THEOCHEM) 187,1 (1989) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157795984.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:49 Heat of formation + Delta-G solvation = -272.167834 kcal Electronic energy + Delta-G solvation = -22251.001194 eV Core-core repulsion = 18616.722317 eV Total energy + Delta-G solvation = -3634.278877 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 302.091 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.43809 -38.71975 -37.62404 -36.90071 -36.26565 -35.89494 -34.21833 -32.76326 -32.01410 -29.92648 -28.98542 -25.74962 -24.09157 -22.55941 -22.25053 -20.76074 -19.83307 -19.11724 -18.62237 -17.93833 -17.49546 -16.71310 -16.50989 -16.43839 -15.89595 -15.57309 -15.49425 -15.12645 -14.70409 -14.22745 -14.15120 -14.05199 -13.78816 -13.73804 -13.41503 -13.33004 -13.16067 -12.99171 -12.74302 -12.54046 -12.37562 -12.13519 -11.89159 -11.69459 -11.65954 -11.57064 -11.08242 -10.59367 -9.94965 -9.74588 -8.60982 -8.28322 -6.11752 0.42075 0.92639 1.24015 1.40290 1.50830 1.55285 2.22165 2.70741 2.84463 2.91923 3.78219 3.80131 3.87518 4.03636 4.14611 4.41208 4.54435 4.74549 4.75369 4.85328 4.99171 5.03256 5.08467 5.20072 5.22296 5.27397 5.44624 5.60371 5.81995 5.92116 5.96412 6.14563 6.41982 6.76972 6.84663 6.87448 6.93269 7.15979 7.95537 8.41486 Molecular weight = 302.09amu Principal moments of inertia in cm(-1) A = 0.011623 B = 0.005186 C = 0.003788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.501233 B = 5398.274603 C = 7390.472770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.021 3.979 3 C -0.202 4.202 4 C -0.146 4.146 5 C -0.007 4.007 6 C -0.479 4.479 7 H 0.086 0.914 8 C 0.029 3.971 9 N -0.837 5.837 10 Si 0.981 3.019 11 H -0.262 1.262 12 H -0.278 1.278 13 H -0.250 1.250 14 C 0.299 3.701 15 N -0.721 5.721 16 C 0.140 3.860 17 C 0.108 3.892 18 O -0.758 6.758 19 P 2.358 2.642 20 O -1.076 7.076 21 O -0.860 6.860 22 O -0.869 6.869 23 N -0.542 5.542 24 H 0.061 0.939 25 H 0.075 0.925 26 H 0.062 0.938 27 H 0.115 0.885 28 H 0.111 0.889 29 H 0.284 0.716 30 H 0.405 0.595 31 H 0.046 0.954 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.446 0.554 36 H 0.455 0.545 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.224 -9.547 -0.897 10.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.113 4.113 3 C -0.224 4.224 4 C -0.173 4.173 5 C -0.014 4.014 6 C -0.510 4.510 7 H 0.104 0.896 8 C -0.184 4.184 9 N -0.464 5.464 10 Si 0.802 3.198 11 H -0.187 1.187 12 H -0.203 1.203 13 H -0.174 1.174 14 C 0.060 3.940 15 N -0.361 5.361 16 C 0.016 3.984 17 C 0.036 3.964 18 O -0.780 6.780 19 P 2.639 2.361 20 O -1.172 7.172 21 O -0.782 6.782 22 O -0.794 6.794 23 N -0.261 5.261 24 H 0.080 0.920 25 H 0.094 0.906 26 H 0.081 0.919 27 H 0.133 0.867 28 H 0.129 0.871 29 H 0.094 0.906 30 H 0.242 0.758 31 H 0.064 0.936 32 H 0.097 0.903 33 H 0.118 0.882 34 H 0.111 0.889 35 H 0.305 0.695 36 H 0.317 0.683 Dipole moment (debyes) X Y Z Total from point charges 3.987 -10.161 -0.817 10.946 hybrid contribution 2.146 1.585 0.357 2.692 sum 6.133 -8.576 -0.460 10.553 Atomic orbital electron populations 1.20344 0.88323 1.02317 1.01659 1.20769 0.96712 0.87510 1.06311 1.21486 0.94889 0.98052 1.07961 1.21434 0.93204 0.98003 1.04650 1.18282 0.94981 0.90799 0.97301 1.19387 0.90788 1.04016 1.36831 0.89627 1.26723 1.05515 0.94159 0.92008 1.69883 1.40332 1.11308 1.24875 0.85264 0.76156 0.78957 0.79418 1.18691 1.20318 1.17405 1.18713 0.88295 0.86589 1.00355 1.43657 1.07715 1.01015 1.83664 1.21202 0.93256 0.82340 1.01624 1.22730 0.94246 0.99467 0.79975 1.87863 1.66231 1.74909 1.49030 0.87581 0.50031 0.50214 0.48269 1.95152 1.81218 1.50172 1.90685 1.88078 1.63601 1.48673 1.77867 1.87633 1.67884 1.66688 1.57172 1.66511 1.08216 1.30323 1.21031 0.92009 0.90571 0.91859 0.86741 0.87090 0.90568 0.75787 0.93568 0.90284 0.88195 0.88920 0.69534 0.68346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.36 10.15 71.24 0.72 -1.64 16 2 C 0.02 0.96 6.79 42.64 0.29 1.25 16 3 C -0.20 -9.55 9.69 22.32 0.22 -9.33 16 4 C -0.15 -7.72 8.79 22.89 0.20 -7.52 16 5 C -0.01 -0.35 5.60 -21.06 -0.12 -0.47 16 6 C -0.48 -23.67 8.53 23.37 0.20 -23.47 16 7 H 0.09 3.80 6.67 -2.91 -0.02 3.78 16 8 C 0.03 1.38 5.23 85.25 0.45 1.83 16 9 N -0.84 -42.75 10.83 21.83 0.24 -42.51 16 10 Si 0.98 35.30 29.58 68.60 2.03 37.33 16 11 H -0.26 -9.26 7.11 99.48 0.71 -8.56 16 12 H -0.28 -9.90 7.11 99.48 0.71 -9.19 16 13 H -0.25 -8.19 7.11 99.48 0.71 -7.49 16 14 C 0.30 14.48 7.52 134.05 1.01 15.48 16 15 N -0.72 -28.36 5.56 -343.65 -1.91 -30.27 16 16 C 0.14 4.50 6.06 86.38 0.52 5.03 16 17 C 0.11 2.63 6.58 71.98 0.47 3.11 16 18 O -0.76 -19.46 10.14 -14.54 -0.15 -19.61 16 19 P 2.36 49.36 7.35 -40.88 -0.30 49.06 16 20 O -1.08 -34.43 18.58 -8.16 -0.15 -34.58 16 21 O -0.86 -12.49 14.06 -14.54 -0.20 -12.70 16 22 O -0.87 -14.99 14.06 -14.54 -0.20 -15.19 16 23 N -0.54 -25.77 9.44 -179.57 -1.70 -27.46 16 24 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 25 H 0.08 2.24 8.07 -2.39 -0.02 2.22 16 26 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 27 H 0.11 4.77 8.06 -2.91 -0.02 4.75 16 28 H 0.11 6.09 6.17 -2.91 -0.02 6.08 16 29 H 0.28 13.30 8.30 -92.71 -0.77 12.53 16 30 H 0.41 14.78 6.67 -92.71 -0.62 14.16 16 31 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 32 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 33 H 0.10 2.13 8.14 -2.38 -0.02 2.11 16 34 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.45 2.27 9.11 -74.06 -0.67 1.60 16 36 H 0.46 3.22 9.11 -74.06 -0.67 2.55 16 Total: -1.00 -78.17 326.88 0.80 -77.37 By element: Atomic # 1 Polarization: 35.10 SS G_CDS: -0.81 Total: 34.29 kcal Atomic # 6 Polarization: -19.69 SS G_CDS: 3.96 Total: -15.73 kcal Atomic # 7 Polarization: -96.87 SS G_CDS: -3.37 Total: -100.24 kcal Atomic # 8 Polarization: -81.37 SS G_CDS: -0.71 Total: -82.08 kcal Atomic # 14 Polarization: 35.30 SS G_CDS: 2.03 Total: 37.33 kcal Atomic # 15 Polarization: 49.36 SS G_CDS: -0.30 Total: 49.06 kcal Total: -78.17 0.80 -77.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157795984.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -194.797 kcal (2) G-P(sol) polarization free energy of solvation -78.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -272.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -272.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds