Wall clock time and date at job start Tue Mar 31 2020 03:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47219 * 2 1 4 4 F 1.39902 * 109.46956 * 240.00610 * 2 1 3 5 5 C 1.50695 * 109.47531 * 120.00607 * 2 1 3 6 6 O 1.21284 * 119.99844 * 254.46240 * 5 2 1 7 7 N 1.34772 * 120.00327 * 74.45936 * 5 2 1 8 8 C 1.47023 * 125.64724 * 355.21791 * 7 5 2 9 9 C 1.54323 * 107.27397 * 181.02533 * 8 7 5 10 10 C 1.55163 * 102.94007 * 22.19486 * 9 8 7 11 11 H 1.08993 * 111.03557 * 82.58710 * 10 9 8 12 12 N 1.46903 * 111.00361 * 206.42588 * 10 9 8 13 13 C 1.46902 * 110.99896 * 267.19884 * 12 10 9 14 14 C 1.50695 * 109.46911 * 180.02562 * 13 12 10 15 15 O 1.21290 * 120.00373 * 359.97438 * 14 13 12 16 16 N 1.34783 * 119.99782 * 179.97438 * 14 13 12 17 17 C 1.37101 * 119.99824 * 179.97438 * 16 14 13 18 18 H 1.07997 * 120.00282 * 359.97438 * 17 16 14 19 19 C 1.38952 * 119.99728 * 179.97438 * 17 16 14 20 20 N 1.31409 * 120.00124 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99943 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47496 * 59.99591 * 21 19 17 23 23 H 1.48494 * 109.47232 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.46938 * 299.99752 * 21 19 17 25 25 C 1.47421 * 125.65255 * 175.17946 * 7 5 2 26 26 H 1.09003 * 109.46936 * 299.99264 * 1 2 3 27 27 H 1.09001 * 109.47565 * 59.99384 * 1 2 3 28 28 H 1.09003 * 109.47172 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47120 * 184.84594 * 3 2 1 30 30 H 1.08990 * 109.47579 * 304.85437 * 3 2 1 31 31 H 1.09004 * 109.46886 * 64.85477 * 3 2 1 32 32 H 1.09002 * 109.88117 * 300.44014 * 8 7 5 33 33 H 1.08995 * 109.88114 * 61.60877 * 8 7 5 34 34 H 1.08997 * 110.72019 * 263.83325 * 9 8 7 35 35 H 1.09004 * 110.72448 * 140.55275 * 9 8 7 36 36 H 1.00898 * 111.00299 * 143.23722 * 12 10 9 37 37 H 1.09002 * 109.46780 * 299.99582 * 13 12 10 38 38 H 1.08999 * 109.47603 * 59.99335 * 13 12 10 39 39 H 0.96995 * 119.99852 * 359.97438 * 16 14 13 40 40 H 0.97006 * 120.00301 * 180.02562 * 20 19 17 41 41 H 1.09004 * 110.36974 * 37.06542 * 25 7 5 42 42 H 1.08998 * 110.36893 * 274.74891 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 9 1.9962 -0.6594 -1.1424 5 6 2.0324 -0.7105 1.2303 6 8 2.4998 -0.0731 2.1502 7 7 1.9622 -2.0541 1.3085 8 6 1.3331 -2.9384 0.3167 9 6 1.4719 -4.3842 0.8383 10 6 1.6701 -4.1854 2.3644 11 1 0.7133 -4.0521 2.8691 12 7 2.4187 -5.3062 2.9485 13 6 1.5073 -6.3400 3.4570 14 6 2.3096 -7.4705 4.0478 15 8 3.5215 -7.4203 4.0451 16 7 1.6805 -8.5375 4.5793 17 6 2.4104 -9.5663 5.1163 18 1 3.4895 -9.5220 5.1132 19 6 1.7618 -10.6660 5.6647 20 7 0.4489 -10.7202 5.6681 21 14 2.7563 -12.0674 6.3971 22 1 3.5925 -11.5520 7.5107 23 1 1.8350 -13.1121 6.9117 24 1 3.6322 -12.6527 5.3503 25 6 2.5044 -2.8807 2.4022 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1266 1.4437 -0.0868 30 1 1.6075 1.9809 -0.8432 31 1 1.7494 1.9306 0.9303 32 1 0.2789 -2.6831 0.2082 33 1 1.8410 -2.8402 -0.6427 34 1 2.3410 -4.8717 0.3969 35 1 0.5651 -4.9551 0.6385 36 1 3.0426 -4.9855 3.6738 37 1 0.8641 -5.9111 4.2255 38 1 0.8938 -6.7178 2.6391 39 1 0.7114 -8.5774 4.5818 40 1 -0.0040 -11.4877 6.0513 41 1 2.3752 -2.3755 3.3594 42 1 3.5578 -3.0987 2.2266 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180641929.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:07 Heat of formation + Delta-G solvation = -114.760501 kcal Electronic energy + Delta-G solvation = -24486.066431 eV Core-core repulsion = 20608.542946 eV Total energy + Delta-G solvation = -3877.523485 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 301.159 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.28576 -40.33378 -38.53822 -37.78900 -34.84322 -34.03723 -33.78866 -31.28570 -30.78878 -29.20522 -27.89354 -26.33657 -24.71555 -23.74362 -22.40040 -20.73696 -19.72543 -19.26328 -17.92915 -17.89524 -16.87992 -16.37920 -16.17303 -15.80475 -15.37702 -15.21589 -14.91320 -14.44991 -14.02983 -13.98681 -13.70775 -13.51141 -13.32920 -13.21427 -12.86976 -12.78674 -12.64816 -12.53085 -12.42031 -12.26089 -11.77138 -11.69802 -11.49965 -11.31757 -11.24064 -11.04880 -10.86107 -10.45631 -10.23419 -10.06798 -9.52267 -8.95000 -8.52157 -8.18673 -7.98908 -6.43826 -3.84778 2.10177 2.47631 3.19021 3.24921 3.29349 3.74337 3.87422 3.99018 4.02861 4.13517 4.25231 4.32761 4.43618 4.54428 4.80483 4.99317 5.02058 5.07985 5.12907 5.19278 5.20821 5.27751 5.31812 5.50585 5.54644 5.59202 5.64173 5.68132 5.76978 5.81030 5.89467 5.94269 6.06372 6.24608 7.07269 7.14103 7.52296 7.53212 7.66839 8.03512 8.58469 9.15468 9.51361 10.02593 10.73751 Molecular weight = 301.16amu Principal moments of inertia in cm(-1) A = 0.046038 B = 0.002319 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.051595 B =12073.261917 C =12241.144062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.107 3.893 3 C -0.159 4.159 4 F -0.194 7.194 5 C 0.515 3.485 6 O -0.526 6.526 7 N -0.606 5.606 8 C 0.093 3.907 9 C -0.123 4.123 10 C 0.073 3.927 11 H 0.062 0.938 12 N -0.655 5.655 13 C 0.051 3.949 14 C 0.440 3.560 15 O -0.583 6.583 16 N -0.563 5.563 17 C -0.300 4.300 18 H 0.103 0.897 19 C 0.023 3.977 20 N -0.902 5.902 21 Si 0.931 3.069 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.273 1.273 25 C 0.102 3.898 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.354 0.646 37 H 0.045 0.955 38 H 0.087 0.913 39 H 0.392 0.608 40 H 0.272 0.728 41 H 0.080 0.920 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.003 20.143 -12.315 24.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.086 3.914 3 C -0.216 4.216 4 F -0.174 7.174 5 C 0.301 3.699 6 O -0.402 6.402 7 N -0.339 5.339 8 C -0.030 4.030 9 C -0.161 4.161 10 C -0.038 4.038 11 H 0.080 0.920 12 N -0.288 5.288 13 C -0.081 4.081 14 C 0.225 3.775 15 O -0.467 6.467 16 N -0.199 5.199 17 C -0.430 4.430 18 H 0.121 0.879 19 C -0.179 4.179 20 N -0.543 5.543 21 Si 0.758 3.242 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.199 1.199 25 C -0.020 4.020 26 H 0.101 0.899 27 H 0.102 0.898 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.105 0.895 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.110 0.890 35 H 0.101 0.899 36 H 0.174 0.826 37 H 0.063 0.937 38 H 0.106 0.894 39 H 0.225 0.775 40 H 0.082 0.918 41 H 0.099 0.901 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.943 20.101 -12.367 23.928 hybrid contribution -0.595 -0.536 1.038 1.312 sum -4.538 19.565 -11.328 23.059 Atomic orbital electron populations 1.22451 0.91457 1.04591 1.04780 1.21128 0.96476 0.93332 0.80492 1.22195 1.03007 0.92127 1.04317 1.92898 1.90251 1.82579 1.51721 1.20496 0.79368 0.81102 0.88972 1.90742 1.45262 1.64964 1.39223 1.48339 1.56758 1.04992 1.23842 1.22391 0.97861 0.90023 0.92740 1.22749 1.04006 0.94188 0.95169 1.22683 0.95913 0.89360 0.95878 0.91979 1.60089 1.19291 1.10016 1.39452 1.21733 0.94520 0.93032 0.98833 1.19761 0.88595 0.84681 0.84440 1.90532 1.13902 1.80429 1.61829 1.41854 1.09334 1.16786 1.51950 1.19657 0.93023 0.96077 1.34214 0.87943 1.25267 0.95827 0.99052 0.97772 1.69601 1.07209 1.31664 1.45836 0.85908 0.78950 0.79956 0.79359 1.19896 1.20978 1.19855 1.22440 0.98742 0.90089 0.90749 0.89914 0.89849 0.90537 0.90830 0.90532 0.89477 0.91176 0.90010 0.88951 0.89911 0.82597 0.93659 0.89444 0.77452 0.91794 0.90115 0.89831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.09 8.84 37.15 0.33 -0.76 16 2 C 0.11 0.95 1.24 -91.78 -0.11 0.84 16 3 C -0.16 -1.21 8.43 37.16 0.31 -0.90 16 4 F -0.19 -1.90 14.77 2.25 0.03 -1.87 16 5 C 0.51 6.11 6.84 -10.99 -0.08 6.03 16 6 O -0.53 -7.84 16.12 5.55 0.09 -7.75 16 7 N -0.61 -6.74 3.33 -170.53 -0.57 -7.31 16 8 C 0.09 0.83 5.82 -3.06 -0.02 0.81 16 9 C -0.12 -1.23 6.65 -24.89 -0.17 -1.39 16 10 C 0.07 0.85 3.38 -65.56 -0.22 0.63 16 11 H 0.06 0.69 7.83 -51.93 -0.41 0.28 16 12 N -0.66 -9.94 6.04 -105.72 -0.64 -10.58 16 13 C 0.05 0.86 6.03 -4.98 -0.03 0.83 16 14 C 0.44 10.15 7.82 -10.99 -0.09 10.06 16 15 O -0.58 -15.59 15.78 5.55 0.09 -15.50 16 16 N -0.56 -14.04 5.29 -10.96 -0.06 -14.10 16 17 C -0.30 -8.30 9.68 -14.93 -0.14 -8.45 16 18 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 19 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 20 N -0.90 -24.30 13.05 55.50 0.72 -23.58 16 21 Si 0.93 20.93 29.55 -169.99 -5.02 15.91 16 22 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 25 C 0.10 1.21 6.33 -2.53 -0.02 1.19 16 26 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.08 0.46 5.74 -51.93 -0.30 0.16 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.09 0.67 7.77 -51.93 -0.40 0.27 16 32 H 0.07 0.51 6.07 -51.93 -0.32 0.19 16 33 H 0.08 0.72 6.87 -51.93 -0.36 0.37 16 34 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.35 5.61 8.14 -39.29 -0.32 5.29 16 37 H 0.05 0.68 8.09 -51.93 -0.42 0.26 16 38 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.39 9.31 7.90 -40.82 -0.32 8.99 16 40 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 41 H 0.08 0.98 7.99 -51.93 -0.42 0.57 16 42 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 348.80 15.07 5.26 5.26 Total: -1.00 -32.55 348.80 -6.57 -39.12 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -6.15 Total: 11.01 kcal Atomic # 6 Polarization: 9.72 SS G_CDS: -0.33 Total: 9.39 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: -0.54 Total: -55.56 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: 0.18 Total: -23.25 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 0.03 Total: -1.87 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.55 -6.57 -39.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180641929.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.642 kcal (2) G-P(sol) polarization free energy of solvation -32.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds