Wall clock time and date at job start Tue Mar 31 2020 03:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46567 * 2 1 4 4 H 1.09000 * 109.47307 * 55.00379 * 3 2 1 5 5 F 1.39893 * 109.47563 * 295.00212 * 3 2 1 6 6 C 1.50698 * 109.46949 * 175.00093 * 3 2 1 7 7 O 1.21284 * 120.00072 * 45.00148 * 6 3 2 8 8 N 1.34782 * 120.00177 * 225.00043 * 6 3 2 9 9 C 1.47426 * 125.64566 * 359.97438 * 8 6 3 10 10 C 1.54913 * 104.82786 * 155.90543 * 9 8 6 11 11 C 1.55152 * 101.58291 * 37.01028 * 10 9 8 12 12 H 1.08997 * 110.72291 * 83.03753 * 11 10 9 13 13 N 1.46905 * 110.72015 * 206.13288 * 11 10 9 14 14 C 1.46901 * 110.99870 * 273.54749 * 13 11 10 15 15 C 1.50697 * 109.46943 * 180.02562 * 14 13 11 16 16 O 1.21292 * 120.00024 * 359.97438 * 15 14 13 17 17 N 1.34776 * 119.99767 * 180.02562 * 15 14 13 18 18 C 1.37102 * 120.00095 * 179.97438 * 17 15 14 19 19 H 1.08004 * 119.99386 * 359.97438 * 18 17 15 20 20 C 1.38941 * 120.00393 * 179.97438 * 18 17 15 21 21 N 1.31416 * 119.99786 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00292 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47100 * 90.00207 * 22 20 18 24 24 H 1.48501 * 109.47251 * 210.00227 * 22 20 18 25 25 H 1.48503 * 109.46881 * 330.00341 * 22 20 18 26 26 C 1.47017 * 125.64924 * 180.02562 * 8 6 3 27 27 H 1.09001 * 109.46391 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46908 * 299.99471 * 1 2 3 29 29 H 1.08992 * 109.47552 * 59.99815 * 1 2 3 30 30 H 1.08996 * 109.46908 * 240.00529 * 2 1 3 31 31 H 1.08992 * 109.47168 * 119.99807 * 2 1 3 32 32 H 1.08995 * 110.36666 * 37.06872 * 9 8 6 33 33 H 1.08993 * 110.36638 * 274.74318 * 9 8 6 34 34 H 1.09000 * 111.00381 * 278.93401 * 10 9 8 35 35 H 1.09002 * 111.00094 * 155.08781 * 10 9 8 36 36 H 1.00901 * 110.99869 * 149.59461 * 13 11 10 37 37 H 1.09004 * 109.47031 * 299.99620 * 14 13 11 38 38 H 1.08995 * 109.47111 * 59.99900 * 14 13 11 39 39 H 0.96997 * 120.00713 * 359.97438 * 17 15 14 40 40 H 0.97001 * 119.99428 * 179.97438 * 21 20 18 41 41 H 1.09003 * 109.88509 * 61.60827 * 26 8 6 42 42 H 1.09005 * 109.88482 * 300.44251 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 9 1.6698 2.0681 -1.1953 6 6 3.5418 1.4445 0.1238 7 8 4.2064 0.6813 -0.5447 8 7 4.1466 2.2943 0.9774 9 6 3.4638 3.2708 1.8456 10 6 4.4529 3.5252 3.0105 11 6 5.8182 3.4830 2.2747 12 1 6.0400 4.4474 1.8177 13 7 6.8925 3.0868 3.1950 14 6 7.4333 4.2529 3.9062 15 6 8.5308 3.8083 4.8382 16 8 8.8325 2.6353 4.9040 17 7 9.1764 4.7139 5.5995 18 6 10.1745 4.3094 6.4479 19 1 10.4431 3.2649 6.5064 20 6 10.8405 5.2430 7.2323 21 7 10.5132 6.5138 7.1614 22 14 12.1999 4.6918 8.3887 23 1 13.5021 4.7304 7.6759 24 1 12.2508 5.6008 9.5619 25 1 11.9277 3.3060 8.8477 26 6 5.5964 2.4017 1.1962 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 2.5306 2.8541 2.2245 33 1 3.2738 4.1953 1.3005 34 1 4.3874 2.7349 3.7583 35 1 4.2821 4.5027 3.4615 36 1 7.6227 2.5907 2.7062 37 1 7.8357 4.9640 3.1847 38 1 6.6386 4.7286 4.4808 39 1 8.9349 5.6519 5.5472 40 1 10.9779 7.1655 7.7094 41 1 6.0904 2.6952 0.2699 42 1 5.9909 1.4464 1.5425 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184890516.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:14 Heat of formation + Delta-G solvation = -144.673251 kcal Electronic energy + Delta-G solvation = -24099.789110 eV Core-core repulsion = 20220.968511 eV Total energy + Delta-G solvation = -3878.820599 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 301.159 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.99113 -41.21954 -40.15369 -38.89155 -36.24455 -35.61463 -34.97297 -33.27047 -31.87159 -30.38763 -28.79774 -27.44518 -25.60159 -24.49943 -22.91175 -21.56401 -21.14090 -20.58925 -19.90391 -18.87577 -18.06617 -17.80808 -17.15417 -16.99020 -16.82997 -16.41251 -16.21982 -15.85522 -15.38004 -15.29313 -14.95831 -14.73535 -14.46238 -14.28448 -14.01783 -13.81697 -13.62950 -13.48982 -13.20994 -13.17843 -12.89437 -12.84270 -12.61000 -12.41507 -12.17617 -12.11477 -12.05199 -11.92049 -11.74795 -11.50719 -10.96881 -10.35216 -10.01281 -9.88050 -9.41044 -8.46775 -5.95163 1.19829 1.37999 1.42250 1.54409 1.60316 2.05834 2.29281 2.88135 3.04900 3.20809 3.39989 3.48255 3.56009 3.59296 3.64750 3.84519 4.10345 4.25524 4.31742 4.33460 4.37835 4.47144 4.51084 4.57665 4.63921 4.69724 4.73303 4.75523 4.93929 5.02997 5.11004 5.14446 5.26764 5.33681 5.41436 5.87533 6.08689 6.21199 6.30430 6.60432 6.78925 7.13124 7.56838 8.12415 8.70419 Molecular weight = 301.16amu Principal moments of inertia in cm(-1) A = 0.043635 B = 0.002202 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.535658 B =12713.083102 C =12848.900888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.142 4.142 3 C 0.090 3.910 4 H 0.140 0.860 5 F -0.200 7.200 6 C 0.497 3.503 7 O -0.572 6.572 8 N -0.606 5.606 9 C 0.091 3.909 10 C -0.120 4.120 11 C 0.078 3.922 12 H 0.081 0.919 13 N -0.672 5.672 14 C 0.068 3.932 15 C 0.436 3.564 16 O -0.626 6.626 17 N -0.572 5.572 18 C -0.333 4.333 19 H 0.077 0.923 20 C -0.013 4.013 21 N -0.919 5.919 22 Si 0.991 3.009 23 H -0.272 1.272 24 H -0.270 1.270 25 H -0.274 1.274 26 C 0.106 3.894 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.090 0.910 32 H 0.110 0.890 33 H 0.098 0.902 34 H 0.075 0.925 35 H 0.108 0.892 36 H 0.345 0.655 37 H 0.071 0.929 38 H 0.112 0.888 39 H 0.398 0.602 40 H 0.278 0.722 41 H 0.068 0.932 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.524 -1.899 -11.366 24.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.181 4.181 3 C 0.051 3.949 4 H 0.158 0.842 5 F -0.181 7.181 6 C 0.285 3.715 7 O -0.451 6.451 8 N -0.339 5.339 9 C -0.030 4.030 10 C -0.158 4.158 11 C -0.032 4.032 12 H 0.099 0.901 13 N -0.305 5.305 14 C -0.064 4.064 15 C 0.224 3.776 16 O -0.512 6.512 17 N -0.210 5.210 18 C -0.463 4.463 19 H 0.095 0.905 20 C -0.212 4.212 21 N -0.559 5.559 22 Si 0.815 3.185 23 H -0.197 1.197 24 H -0.195 1.195 25 H -0.199 1.199 26 C -0.017 4.017 27 H 0.091 0.909 28 H 0.096 0.904 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.108 0.892 32 H 0.128 0.872 33 H 0.116 0.884 34 H 0.094 0.906 35 H 0.126 0.874 36 H 0.164 0.836 37 H 0.088 0.912 38 H 0.130 0.870 39 H 0.232 0.768 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -21.374 -3.098 -11.146 24.303 hybrid contribution 1.643 0.575 -0.297 1.766 sum -19.731 -2.523 -11.443 22.948 Atomic orbital electron populations 1.21761 0.92116 1.03510 1.03173 1.22026 0.98876 0.92737 1.04429 1.21829 0.89235 0.97517 0.86307 0.84224 1.92859 1.91813 1.84138 1.49267 1.21344 0.91586 0.79510 0.79110 1.90722 1.67456 1.41148 1.45774 1.48599 1.07952 1.36890 1.40500 1.22834 0.97108 0.92582 0.90448 1.22902 0.91550 1.04507 0.96861 1.22624 0.93020 0.96541 0.91057 0.90146 1.60176 1.14959 1.23823 1.31584 1.21573 0.95904 0.92574 0.96363 1.20929 0.85982 0.85988 0.84725 1.90507 1.69854 1.19472 1.71409 1.41920 1.32508 1.09778 1.36763 1.19639 1.12973 0.94929 1.18770 0.90481 1.26010 1.00846 0.94918 0.99467 1.69664 1.43098 1.01531 1.41647 0.84951 0.77846 0.78043 0.77646 1.19736 1.19483 1.19903 1.21983 0.81571 0.99737 0.98451 0.90888 0.90435 0.92351 0.91585 0.89174 0.87216 0.88370 0.90583 0.87361 0.83616 0.91163 0.86970 0.76834 0.91289 0.91406 0.92059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.83 71.98 0.71 -0.68 16 2 C -0.14 -2.06 5.41 30.60 0.17 -1.89 16 3 C 0.09 1.41 3.54 29.85 0.11 1.51 16 4 H 0.14 1.07 6.11 -2.39 -0.01 1.05 16 5 F -0.20 -3.93 16.75 44.97 0.75 -3.18 16 6 C 0.50 11.56 7.19 87.66 0.63 12.19 16 7 O -0.57 -18.69 16.93 -3.04 -0.05 -18.74 16 8 N -0.61 -11.91 3.33 -811.79 -2.70 -14.61 16 9 C 0.09 1.02 6.56 86.86 0.57 1.59 16 10 C -0.12 -1.79 6.71 31.99 0.21 -1.57 16 11 C 0.08 1.55 3.24 46.10 0.15 1.70 16 12 H 0.08 1.36 7.89 -2.39 -0.02 1.34 16 13 N -0.67 -19.36 5.93 -489.45 -2.90 -22.26 16 14 C 0.07 2.10 6.02 85.56 0.52 2.62 16 15 C 0.44 19.99 7.82 87.66 0.69 20.68 16 16 O -0.63 -34.18 15.78 -3.07 -0.05 -34.23 16 17 N -0.57 -28.52 5.29 -306.99 -1.62 -30.14 16 18 C -0.33 -18.69 9.68 84.04 0.81 -17.87 16 19 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 20 C -0.01 -0.66 5.50 84.92 0.47 -0.19 16 21 N -0.92 -48.60 13.05 21.66 0.28 -48.31 16 22 Si 0.99 42.50 29.55 68.60 2.03 44.52 16 23 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 24 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 25 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 26 C 0.11 2.39 6.39 86.73 0.55 2.95 16 27 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.06 0.61 7.93 -2.39 -0.02 0.59 16 30 H 0.07 1.24 8.05 -2.39 -0.02 1.22 16 31 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.11 0.63 6.73 -2.39 -0.02 0.61 16 33 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.34 10.94 8.15 -89.69 -0.73 10.21 16 37 H 0.07 1.87 8.09 -2.39 -0.02 1.85 16 38 H 0.11 2.96 8.13 -2.39 -0.02 2.94 16 39 H 0.40 18.59 7.90 -92.71 -0.73 17.86 16 40 H 0.28 13.76 8.31 -92.71 -0.77 12.99 16 41 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.06 1.67 7.97 -2.38 -0.02 1.65 16 Total: -1.00 -74.88 355.24 0.90 -73.97 By element: Atomic # 1 Polarization: 32.36 SS G_CDS: -0.41 Total: 31.95 kcal Atomic # 6 Polarization: 15.45 SS G_CDS: 5.58 Total: 21.03 kcal Atomic # 7 Polarization: -108.39 SS G_CDS: -6.94 Total: -115.33 kcal Atomic # 8 Polarization: -52.87 SS G_CDS: -0.10 Total: -52.97 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.75 Total: -3.18 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.52 kcal Total: -74.88 0.90 -73.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184890516.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.699 kcal (2) G-P(sol) polarization free energy of solvation -74.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds