Wall clock time and date at job start Tue Mar 31 2020 03:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36000 * 117.00115 * 2 1 4 4 C 1.38803 * 120.49007 * 0.02562 * 3 2 1 5 5 C 1.38777 * 118.43848 * 180.25783 * 4 3 2 6 6 C 1.38056 * 119.32694 * 359.44790 * 5 4 3 7 7 C 1.50706 * 119.52975 * 180.28238 * 6 5 4 8 8 N 1.46497 * 109.47242 * 95.27849 * 7 6 5 9 9 S 1.65596 * 119.99825 * 165.00235 * 8 7 6 10 10 O 1.42106 * 106.40248 * 178.54162 * 9 8 7 11 11 O 1.42107 * 106.40369 * 311.45852 * 9 8 7 12 12 C 1.76197 * 107.22147 * 65.00240 * 9 8 7 13 13 H 1.08000 * 119.99991 * 359.97438 * 12 9 8 14 14 C 1.37874 * 120.00158 * 180.02562 * 12 9 8 15 15 N 1.31516 * 120.00214 * 359.97438 * 14 12 9 16 16 Si 1.86800 * 119.99963 * 179.97438 * 14 12 9 17 17 H 1.48503 * 109.47155 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47214 * 119.99675 * 16 14 12 19 19 H 1.48493 * 109.47147 * 239.99530 * 16 14 12 20 20 N 1.31987 * 120.94077 * 0.56527 * 6 5 4 21 21 C 1.32167 * 121.70445 * 359.71439 * 20 6 5 22 22 O 1.35765 * 119.71683 * 180.02562 * 21 20 6 23 23 C 1.42894 * 116.99824 * 359.97438 * 22 21 20 24 24 H 1.08996 * 109.47342 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46828 * 300.00214 * 1 2 3 26 26 H 1.08998 * 109.47055 * 59.99200 * 1 2 3 27 27 H 1.08002 * 120.77839 * 359.97438 * 4 3 2 28 28 H 1.07990 * 120.33759 * 179.70347 * 5 4 3 29 29 H 1.09004 * 109.47229 * 215.28429 * 7 6 5 30 30 H 1.09007 * 109.46793 * 335.27927 * 7 6 5 31 31 H 0.97004 * 120.00141 * 345.00230 * 8 7 6 32 32 H 0.96995 * 120.00008 * 180.02562 * 15 14 12 33 33 H 1.09008 * 109.46968 * 179.97438 * 23 22 21 34 34 H 1.09000 * 109.47581 * 300.00116 * 23 22 21 35 35 H 1.08994 * 109.47268 * 60.00302 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.3005 2.3823 0.0005 5 6 1.9744 3.5954 -0.0050 6 6 3.3549 3.6021 0.0008 7 6 4.0914 4.9170 0.0013 8 7 4.4351 5.2836 1.3774 9 16 5.5550 6.4695 1.6631 10 8 5.6383 6.6112 3.0746 11 8 6.6769 6.1676 0.8447 12 6 4.8841 7.9792 1.0503 13 1 3.9060 7.9889 0.5924 14 6 5.6082 9.1479 1.1545 15 7 6.7994 9.1360 1.7116 16 14 4.8971 10.7482 0.5042 17 1 3.5523 10.4943 -0.0722 18 1 4.7832 11.7269 1.6152 19 1 5.7908 11.2955 -0.5479 20 7 4.0390 2.4733 0.0003 21 6 3.4374 1.2965 -0.0001 22 8 4.1809 0.1606 -0.0001 23 6 5.6014 0.3151 -0.0001 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 0.2210 2.3497 0.0005 28 1 1.4245 4.5249 -0.0096 29 1 5.0034 4.8229 -0.5883 30 1 3.4563 5.6893 -0.4327 31 1 4.0067 4.8318 2.1212 32 1 7.3086 9.9583 1.7852 33 1 6.0738 -0.6674 0.0003 34 1 5.9071 0.8651 -0.8901 35 1 5.9072 0.8651 0.8898 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193001068.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:42 Heat of formation + Delta-G solvation = -157.624945 kcal Electronic energy + Delta-G solvation = -22370.022959 eV Core-core repulsion = 18687.469057 eV Total energy + Delta-G solvation = -3682.553902 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 302.081 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.01371 -39.52440 -39.02043 -37.38832 -36.12365 -35.88277 -35.11737 -33.00601 -31.55027 -28.89364 -28.23188 -28.09709 -26.22279 -24.09605 -22.97249 -21.04775 -19.50190 -19.37204 -18.89112 -18.48418 -18.01566 -17.38885 -17.15869 -16.68944 -16.24185 -15.95332 -15.82443 -15.46787 -15.19041 -15.01722 -14.47966 -14.25887 -14.16105 -13.94850 -13.42001 -13.16100 -12.99214 -12.83287 -12.54637 -12.49311 -12.41005 -12.30285 -12.23977 -12.22188 -12.10575 -11.23311 -10.98436 -10.81839 -10.62888 -10.23289 -9.04074 -8.72006 -7.45288 -0.06368 0.17023 0.45681 1.38291 1.39350 1.57101 1.99047 2.24575 2.28932 2.56705 2.62410 3.09197 3.12877 3.66597 3.76168 3.83488 3.96083 4.18814 4.39933 4.40475 4.42925 4.44685 4.48406 4.62711 4.63678 4.74950 4.77124 4.92010 4.97042 5.07680 5.30018 5.33967 5.92696 5.94568 6.31540 6.36879 6.81421 6.81750 8.24886 Molecular weight = 302.08amu Principal moments of inertia in cm(-1) A = 0.024519 B = 0.003752 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.713720 B = 7460.061076 C = 8168.755459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.322 6.322 3 C 0.061 3.939 4 C -0.123 4.123 5 C -0.137 4.137 6 C 0.102 3.898 7 C 0.176 3.824 8 N -1.115 6.115 9 S 2.719 3.281 10 O -1.046 7.046 11 O -1.044 7.044 12 C -1.034 5.034 13 H 0.130 0.870 14 C 0.067 3.933 15 N -0.897 5.897 16 Si 0.995 3.005 17 H -0.240 1.240 18 H -0.263 1.263 19 H -0.262 1.262 20 N -0.515 5.515 21 C 0.270 3.730 22 O -0.314 6.314 23 C 0.038 3.962 24 H 0.119 0.881 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.189 0.811 28 H 0.177 0.823 29 H 0.070 0.930 30 H 0.110 0.890 31 H 0.412 0.588 32 H 0.298 0.702 33 H 0.126 0.874 34 H 0.053 0.947 35 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.403 -13.844 -6.517 22.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.235 6.235 3 C 0.012 3.988 4 C -0.149 4.149 5 C -0.158 4.158 6 C -0.034 4.034 7 C 0.049 3.951 8 N -0.874 5.874 9 S 2.820 3.180 10 O -1.036 7.036 11 O -1.034 7.034 12 C -1.168 5.168 13 H 0.148 0.852 14 C -0.146 4.146 15 N -0.529 5.529 16 Si 0.813 3.187 17 H -0.163 1.163 18 H -0.187 1.187 19 H -0.187 1.187 20 N -0.240 5.240 21 C 0.089 3.911 22 O -0.221 6.221 23 C -0.057 4.057 24 H 0.137 0.863 25 H 0.089 0.911 26 H 0.091 0.909 27 H 0.206 0.794 28 H 0.194 0.806 29 H 0.088 0.912 30 H 0.127 0.873 31 H 0.245 0.755 32 H 0.108 0.892 33 H 0.144 0.856 34 H 0.072 0.928 35 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -14.377 -14.307 -6.200 21.209 hybrid contribution -0.918 0.935 0.065 1.312 sum -15.295 -13.372 -6.135 21.222 Atomic orbital electron populations 1.23477 0.75814 1.06005 1.02813 1.86180 1.23819 1.24880 1.88638 1.19122 0.89350 0.87302 1.03026 1.21921 1.02428 0.89498 1.01029 1.22055 0.93059 1.00525 1.00140 1.20814 0.92101 0.91357 0.99131 1.20078 0.99998 0.92082 0.82902 1.55351 1.63034 1.56166 1.12828 0.99949 0.72127 0.74003 0.71926 1.93311 1.87143 1.87845 1.35297 1.93307 1.52814 1.86196 1.71036 1.30896 1.16381 1.13745 1.55796 0.85173 1.26089 0.93196 1.05142 0.90145 1.70016 1.12208 1.32864 1.37783 0.85037 0.80023 0.74888 0.78785 1.16250 1.18745 1.18673 1.67115 1.41478 0.97932 1.17519 1.19430 0.87324 0.85634 0.98736 1.86273 1.21032 1.26389 1.88421 1.22996 0.76537 1.04338 1.01831 0.86281 0.91139 0.90873 0.79376 0.80582 0.91176 0.87255 0.75468 0.89194 0.85601 0.92828 0.93536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.83 113.37 1.11 1.25 16 2 O -0.32 -6.94 10.29 -79.80 -0.82 -7.76 16 3 C 0.06 1.47 6.72 22.67 0.15 1.62 16 4 C -0.12 -2.22 9.14 22.53 0.21 -2.01 16 5 C -0.14 -2.87 9.70 22.36 0.22 -2.66 16 6 C 0.10 3.02 6.17 42.49 0.26 3.28 16 7 C 0.18 5.95 6.53 85.64 0.56 6.51 16 8 N -1.12 -44.60 5.99 -190.78 -1.14 -45.74 16 9 S 2.72 146.69 5.02 -56.49 -0.28 146.41 16 10 O -1.05 -63.32 18.02 -128.00 -2.31 -65.63 16 11 O -1.04 -63.37 17.49 -128.00 -2.24 -65.61 16 12 C -1.03 -55.19 9.72 67.73 0.66 -54.53 16 13 H 0.13 6.00 7.81 -2.91 -0.02 5.98 16 14 C 0.07 3.65 5.46 84.65 0.46 4.11 16 15 N -0.90 -53.49 13.19 21.45 0.28 -53.20 16 16 Si 0.99 40.12 29.54 68.60 2.03 42.14 16 17 H -0.24 -8.72 7.11 99.48 0.71 -8.02 16 18 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 19 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 20 N -0.52 -17.00 9.13 -296.60 -2.71 -19.70 16 21 C 0.27 8.20 7.50 84.91 0.64 8.84 16 22 O -0.31 -9.33 10.27 -77.16 -0.79 -10.12 16 23 C 0.04 0.95 10.38 113.37 1.18 2.13 16 24 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.07 0.52 7.70 -2.39 -0.02 0.50 16 26 H 0.07 0.50 7.70 -2.39 -0.02 0.48 16 27 H 0.19 1.71 6.44 -2.91 -0.02 1.69 16 28 H 0.18 2.57 8.06 -2.92 -0.02 2.54 16 29 H 0.07 2.67 7.75 -2.38 -0.02 2.66 16 30 H 0.11 3.01 8.04 -2.38 -0.02 2.99 16 31 H 0.41 14.77 8.65 -96.74 -0.84 13.93 16 32 H 0.30 15.92 8.31 -92.71 -0.77 15.15 16 33 H 0.13 2.24 8.14 -2.38 -0.02 2.22 16 34 H 0.05 1.39 8.11 -2.39 -0.02 1.37 16 35 H 0.05 1.28 8.10 -2.39 -0.02 1.26 16 Total: -1.00 -83.77 324.37 -2.24 -86.01 By element: Atomic # 1 Polarization: 24.38 SS G_CDS: 0.30 Total: 24.68 kcal Atomic # 6 Polarization: -36.91 SS G_CDS: 5.45 Total: -31.46 kcal Atomic # 7 Polarization: -115.08 SS G_CDS: -3.57 Total: -118.65 kcal Atomic # 8 Polarization: -142.97 SS G_CDS: -6.16 Total: -149.13 kcal Atomic # 14 Polarization: 40.12 SS G_CDS: 2.03 Total: 42.14 kcal Atomic # 16 Polarization: 146.69 SS G_CDS: -0.28 Total: 146.41 kcal Total: -83.77 -2.24 -86.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193001068.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.617 kcal (2) G-P(sol) polarization free energy of solvation -83.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds