Wall clock time and date at job start Tue Mar 31 2020 04:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31293 * 1 3 3 Si 1.86798 * 120.00216 * 2 1 4 4 H 1.48501 * 109.47238 * 270.00739 * 3 2 1 5 5 H 1.48510 * 109.46837 * 30.00185 * 3 2 1 6 6 H 1.48494 * 109.47474 * 150.00253 * 3 2 1 7 7 C 1.38991 * 119.99945 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00252 * 179.97438 * 7 2 1 9 9 N 1.37313 * 120.00080 * 0.02562 * 7 2 1 10 10 C 1.36477 * 126.06623 * 180.31187 * 9 7 2 11 11 C 1.35722 * 107.50496 * 180.13765 * 10 9 7 12 12 N 1.40456 * 126.09110 * 179.84427 * 11 10 9 13 13 C 1.34777 * 120.00000 * 179.71223 * 12 11 10 14 14 O 1.21526 * 119.99874 * 359.97438 * 13 12 11 15 15 C 1.48252 * 119.99941 * 179.97438 * 13 12 11 16 16 N 1.32913 * 120.14478 * 76.79992 * 15 13 12 17 17 C 1.31841 * 119.99190 * 180.29738 * 16 15 13 18 18 C 1.39004 * 120.29148 * 359.70997 * 17 16 15 19 19 N 1.31829 * 120.30042 * 0.02562 * 18 17 16 20 20 C 1.32894 * 120.00134 * 359.97438 * 19 18 17 21 21 C 1.48283 * 120.14794 * 180.02562 * 20 19 18 22 22 N 1.34777 * 120.00339 * 355.15573 * 21 20 19 23 23 O 1.21502 * 120.00222 * 175.15612 * 21 20 19 24 24 C 1.40687 * 107.82018 * 359.57359 * 11 10 9 25 25 N 1.30892 * 108.37911 * 0.26738 * 24 11 10 26 26 H 0.97001 * 119.99626 * 359.97438 * 1 2 3 27 27 H 1.08001 * 126.24653 * 359.96834 * 10 9 7 28 28 H 0.96998 * 119.99935 * 359.70818 * 12 11 10 29 29 H 1.07999 * 119.85299 * 179.68823 * 17 16 15 30 30 H 1.08000 * 119.84902 * 180.02562 * 18 17 16 31 31 H 0.96998 * 119.99352 * 0.02562 * 22 21 20 32 32 H 0.96996 * 120.00165 * 179.72064 * 22 21 20 33 33 H 1.08002 * 125.80734 * 180.30484 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 2.4944 2.0465 -1.4001 5 1 1.4444 2.6526 0.7001 6 1 3.5445 1.4401 0.6999 7 6 2.0079 -1.2037 -0.0005 8 1 3.0878 -1.2038 -0.0010 9 7 1.3213 -2.3929 -0.0016 10 6 1.8750 -3.6403 0.0038 11 6 0.8575 -4.5385 -0.0027 12 7 0.9885 -5.9370 -0.0033 13 6 -0.1109 -6.7167 -0.0042 14 8 -1.2153 -6.2098 -0.0041 15 6 0.0274 -8.1928 -0.0055 16 7 0.3506 -8.8338 1.1131 17 6 0.4785 -10.1460 1.1072 18 6 0.2707 -10.8655 -0.0639 19 7 -0.0554 -10.2419 -1.1786 20 6 -0.1875 -8.9196 -1.1861 21 6 -0.5548 -8.2149 -2.4380 22 7 -0.6600 -8.9024 -3.5924 23 8 -0.7609 -7.0176 -2.4232 24 6 -0.3517 -3.8194 -0.0023 25 7 -0.0715 -2.5408 -0.0017 26 1 -0.4850 0.8401 0.0004 27 1 2.9301 -3.8706 0.0092 28 1 1.8700 -6.3415 -0.0031 29 1 0.7462 -10.6641 2.0162 30 1 0.3769 -11.9403 -0.0605 31 1 -0.4957 -9.8583 -3.6042 32 1 -0.9042 -8.4421 -4.4105 33 1 -1.3425 -4.2493 -0.0019 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361688325.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:01:27 Heat of formation + Delta-G solvation = 77.239600 kcal Electronic energy + Delta-G solvation = -23473.872973 eV Core-core repulsion = 19730.645113 eV Total energy + Delta-G solvation = -3743.227860 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 302.091 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.71911 -39.70695 -39.14572 -38.25889 -34.94505 -34.14873 -33.57593 -33.07771 -32.04699 -30.13593 -27.84852 -25.96856 -25.77234 -24.50973 -21.61397 -21.36828 -20.63309 -19.37111 -18.48423 -18.30722 -17.87735 -17.12100 -16.52731 -15.82665 -15.63853 -15.37988 -15.01544 -14.96529 -14.24583 -14.08501 -14.00833 -13.73347 -13.28696 -12.94966 -12.79688 -12.14974 -11.71785 -11.60884 -11.34453 -11.20559 -10.89366 -10.56382 -10.48338 -10.09524 -9.87186 -9.82408 -9.73719 -9.12414 -9.08702 -8.70968 -7.95351 -6.60567 -6.47599 -4.13891 -0.05647 0.53905 2.49847 2.74524 2.95218 3.04763 3.09587 3.14949 3.25511 3.39647 3.64058 3.71694 3.89097 4.06197 4.22211 4.52954 4.54838 4.76644 4.82810 4.88901 5.10345 5.18280 5.74471 6.33193 6.52453 6.56613 6.65157 6.96306 7.03325 7.04678 7.18460 7.25899 7.32047 7.94013 8.06019 8.21109 8.35945 8.67999 8.88158 9.47250 9.77045 10.48474 Molecular weight = 302.09amu Principal moments of inertia in cm(-1) A = 0.030145 B = 0.003361 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.615420 B = 8328.809348 C = 8735.186752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.046 3.954 3 Si 0.934 3.066 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.323 4.323 8 H 0.116 0.884 9 N -0.143 5.143 10 C -0.082 4.082 11 C -0.053 4.053 12 N -0.604 5.604 13 C 0.572 3.428 14 O -0.498 6.498 15 C 0.115 3.885 16 N -0.411 5.411 17 C 0.077 3.923 18 C 0.055 3.945 19 N -0.412 5.412 20 C 0.058 3.942 21 C 0.565 3.435 22 N -0.836 5.836 23 O -0.481 6.481 24 C -0.025 4.025 25 N -0.260 5.260 26 H 0.274 0.726 27 H 0.145 0.855 28 H 0.395 0.605 29 H 0.184 0.816 30 H 0.183 0.817 31 H 0.408 0.592 32 H 0.409 0.591 33 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.109 -22.013 -2.385 22.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.171 4.171 3 Si 0.758 3.242 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.189 1.189 7 C -0.455 4.455 8 H 0.133 0.867 9 N 0.089 4.911 10 C -0.233 4.233 11 C -0.159 4.159 12 N -0.246 5.246 13 C 0.354 3.646 14 O -0.371 6.371 15 C -0.028 4.028 16 N -0.127 5.127 17 C -0.085 4.085 18 C -0.108 4.108 19 N -0.129 5.129 20 C -0.084 4.084 21 C 0.345 3.655 22 N -0.402 5.402 23 O -0.352 6.352 24 C -0.201 4.201 25 N -0.091 5.091 26 H 0.085 0.915 27 H 0.163 0.837 28 H 0.228 0.772 29 H 0.201 0.799 30 H 0.200 0.800 31 H 0.237 0.763 32 H 0.240 0.760 33 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 2.492 -19.390 -2.227 19.676 hybrid contribution 1.273 -1.091 -0.268 1.698 sum 3.765 -20.481 -2.495 20.974 Atomic orbital electron populations 1.70227 1.06099 1.27863 1.35450 1.25634 0.95690 1.00203 0.95578 0.85837 0.79363 0.80068 0.78899 1.19650 1.20135 1.18858 1.19848 0.91620 0.80576 1.53499 0.86683 1.44518 1.04057 1.03216 1.39279 1.21213 0.96716 0.85364 1.19993 1.17170 0.94470 0.80536 1.23703 1.42113 1.07316 1.04634 1.70501 1.16984 0.85406 0.82963 0.79268 1.90718 1.25494 1.71909 1.49026 1.22423 0.93701 0.97476 0.89247 1.68724 1.07950 1.09835 1.26166 1.24240 0.93926 0.90314 1.00061 1.24028 0.95667 1.02297 0.88825 1.68353 1.07638 1.07717 1.29196 1.22128 1.00399 0.90658 0.95217 1.17668 0.78257 0.86562 0.82984 1.43519 1.73126 1.13476 1.10045 1.91096 1.46671 1.12921 1.84506 1.24084 0.97988 0.90635 1.07379 1.78242 0.90060 1.15030 1.25760 0.91530 0.83724 0.77230 0.79934 0.80037 0.76283 0.75957 0.80765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.18 11.81 55.50 0.66 -21.53 16 2 C 0.05 1.22 5.50 -17.50 -0.10 1.13 16 3 Si 0.93 19.46 29.55 -169.99 -5.02 14.44 16 4 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 5 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 6 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 7 C -0.32 -8.84 10.25 -14.82 -0.15 -8.99 16 8 H 0.12 2.80 7.83 -52.49 -0.41 2.39 16 9 N -0.14 -4.09 3.74 -11.41 -0.04 -4.14 16 10 C -0.08 -2.03 11.49 -16.38 -0.19 -2.22 16 11 C -0.05 -1.33 6.90 -83.88 -0.58 -1.91 16 12 N -0.60 -12.23 5.46 -10.74 -0.06 -12.29 16 13 C 0.57 11.71 5.33 -12.14 -0.06 11.64 16 14 O -0.50 -12.14 13.26 -14.94 -0.20 -12.34 16 15 C 0.11 1.81 6.55 -82.51 -0.54 1.27 16 16 N -0.41 -5.43 10.44 -9.32 -0.10 -5.52 16 17 C 0.08 0.62 11.23 -17.26 -0.19 0.42 16 18 C 0.06 0.38 11.23 -17.27 -0.19 0.18 16 19 N -0.41 -4.09 9.72 -9.31 -0.09 -4.18 16 20 C 0.06 0.79 6.78 -82.50 -0.56 0.23 16 21 C 0.57 8.36 8.06 -12.13 -0.10 8.26 16 22 N -0.84 -8.06 8.86 30.63 0.27 -7.79 16 23 O -0.48 -9.65 14.56 -14.92 -0.22 -9.86 16 24 C -0.03 -0.71 10.85 -17.03 -0.18 -0.89 16 25 N -0.26 -7.93 10.39 30.81 0.32 -7.61 16 26 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 27 H 0.15 2.99 8.06 -52.49 -0.42 2.57 16 28 H 0.40 6.48 8.81 -40.82 -0.36 6.12 16 29 H 0.18 0.66 8.06 -52.49 -0.42 0.24 16 30 H 0.18 0.39 8.06 -52.49 -0.42 -0.03 16 31 H 0.41 2.85 8.20 -40.82 -0.33 2.51 16 32 H 0.41 3.36 8.93 -40.82 -0.36 3.00 16 33 H 0.18 4.94 5.92 -52.49 -0.31 4.63 16 LS Contribution 305.44 15.07 4.60 4.60 Total: -1.00 -39.19 305.44 -4.91 -44.10 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -2.18 Total: 13.00 kcal Atomic # 6 Polarization: 11.96 SS G_CDS: -2.85 Total: 9.12 kcal Atomic # 7 Polarization: -64.01 SS G_CDS: 0.96 Total: -63.06 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: -0.42 Total: -22.20 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.02 Total: 14.44 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -39.19 -4.91 -44.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361688325.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.338 kcal (2) G-P(sol) polarization free energy of solvation -39.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds