Wall clock time and date at job start Tue Mar 31 2020 03:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30624 * 1 3 3 Si 1.86803 * 119.99920 * 2 1 4 4 H 1.48498 * 109.47039 * 239.99360 * 3 2 1 5 5 H 1.48494 * 109.47228 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47130 * 120.00078 * 3 2 1 7 7 C 1.40155 * 120.00049 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99868 * 179.97438 * 7 2 1 9 9 C 1.41239 * 119.99742 * 0.02562 * 7 2 1 10 10 O 1.21853 * 120.00263 * 359.97438 * 9 7 2 11 11 N 1.34786 * 119.99790 * 180.27065 * 9 7 2 12 12 C 1.37918 * 119.99731 * 179.72566 * 11 9 7 13 13 N 1.29363 * 125.54488 * 359.69086 * 12 11 9 14 14 C 1.33283 * 118.44297 * 179.97438 * 13 12 11 15 15 C 1.34606 * 113.68446 * 0.21040 * 14 13 12 16 16 S 1.75857 * 125.54172 * 180.02562 * 12 11 9 17 17 C 1.51532 * 127.80434 * 180.23224 * 15 14 13 18 18 S 1.81599 * 108.91856 * 342.06996 * 17 15 14 19 19 O 1.42101 * 108.83632 * 159.55343 * 18 17 15 20 20 O 1.42103 * 108.83484 * 291.24466 * 18 17 15 21 21 C 1.81856 * 100.33635 * 45.41876 * 18 17 15 22 22 C 1.52022 * 119.81515 * 179.86021 * 14 13 12 23 23 H 0.97008 * 119.99603 * 0.02562 * 1 2 3 24 24 H 0.97000 * 119.99685 * 359.72937 * 11 9 7 25 25 H 1.09000 * 109.56114 * 101.90263 * 17 15 14 26 26 H 1.09004 * 109.56027 * 222.12944 * 17 15 14 27 27 H 1.08997 * 109.59871 * 53.74144 * 21 18 17 28 28 H 1.08993 * 109.60657 * 174.22593 * 21 18 17 29 29 H 1.08995 * 109.07466 * 39.68454 * 22 14 13 30 30 H 1.08990 * 109.07459 * 280.72093 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 3.0941 1.6964 -1.2124 5 1 1.2753 2.7465 -0.0006 6 1 3.0940 1.6965 1.2125 7 6 2.0070 -1.2138 0.0005 8 1 3.0870 -1.2137 0.0001 9 6 1.3008 -2.4369 0.0005 10 8 0.0823 -2.4369 0.0005 11 7 1.9747 -3.6042 0.0066 12 6 1.2850 -4.7985 0.0123 13 7 -0.0025 -4.9234 0.0182 14 6 -0.5212 -6.1512 0.0227 15 6 0.4039 -7.1290 0.0250 16 16 2.0130 -6.3993 0.0212 17 6 0.1726 -8.6265 0.0252 18 16 -1.5337 -8.9586 0.5509 19 8 -1.9044 -10.2582 0.1117 20 8 -1.6639 -8.6223 1.9254 21 6 -2.4273 -7.7258 -0.4434 22 6 -2.0303 -6.3342 0.0329 23 1 -0.4850 0.8401 -0.0004 24 1 2.9447 -3.6041 0.0070 25 1 0.3281 -9.0200 -0.9793 26 1 0.8683 -9.1032 0.7158 27 1 -2.1624 -7.8421 -1.4943 28 1 -3.5012 -7.8629 -0.3172 29 1 -2.4837 -5.5906 -0.6226 30 1 -2.4003 -6.1859 1.0473 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412224701.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:36:21 Heat of formation + Delta-G solvation = -50.823730 kcal Electronic energy + Delta-G solvation = -19829.083036 eV Core-core repulsion = 16458.080159 eV Total energy + Delta-G solvation = -3371.002877 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 302.023 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.57229 -37.82434 -37.07190 -36.14412 -34.61816 -33.07384 -32.46027 -31.64501 -27.66554 -26.24790 -24.53908 -23.04939 -20.73461 -19.26396 -18.89230 -18.17629 -17.05946 -16.66701 -16.32877 -15.94343 -15.52576 -15.18969 -15.03519 -14.41097 -14.17895 -13.69541 -13.40376 -13.25967 -12.79193 -12.59353 -12.41681 -12.22597 -12.12458 -11.86498 -11.59261 -11.44403 -11.17210 -10.94094 -10.80740 -10.48248 -10.28862 -9.71189 -9.06049 -9.03464 -8.78527 -7.77946 -7.42034 -6.51032 -5.07969 -0.14851 1.13771 1.41439 1.92957 2.54209 2.98707 3.05109 3.07219 3.24339 3.49155 3.68411 3.87312 4.03025 4.30841 4.36594 4.51347 4.64656 4.82578 4.99510 5.11110 5.39004 5.56345 5.64569 5.74754 5.93013 6.37590 7.07680 7.16286 7.62832 7.80833 8.31456 8.63402 9.00941 10.22207 10.40651 Molecular weight = 302.02amu Principal moments of inertia in cm(-1) A = 0.036798 B = 0.003719 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.726997 B = 7526.371423 C = 8075.090859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.741 5.741 2 C 0.086 3.914 3 Si 0.918 3.082 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.531 4.531 8 H 0.073 0.927 9 C 0.528 3.472 10 O -0.514 6.514 11 N -0.635 5.635 12 C 0.379 3.621 13 N -0.491 5.491 14 C 0.120 3.880 15 C -0.272 4.272 16 S 0.007 5.993 17 C -0.504 4.504 18 S 2.424 3.576 19 O -0.942 6.942 20 O -0.925 6.925 21 C -0.593 4.593 22 C -0.034 4.034 23 H 0.277 0.723 24 H 0.405 0.595 25 H 0.138 0.862 26 H 0.138 0.862 27 H 0.137 0.863 28 H 0.143 0.857 29 H 0.111 0.889 30 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.129 -12.652 -1.947 12.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.368 5.368 2 C -0.138 4.138 3 Si 0.742 3.258 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.567 4.567 8 H 0.091 0.909 9 C 0.335 3.665 10 O -0.390 6.390 11 N -0.285 5.285 12 C 0.006 3.994 13 N -0.213 5.213 14 C -0.014 4.014 15 C -0.395 4.395 16 S 0.257 5.743 17 C -0.635 4.635 18 S 2.605 3.395 19 O -0.940 6.940 20 O -0.923 6.923 21 C -0.723 4.723 22 C -0.074 4.074 23 H 0.088 0.912 24 H 0.241 0.759 25 H 0.156 0.844 26 H 0.156 0.844 27 H 0.155 0.845 28 H 0.161 0.839 29 H 0.129 0.871 30 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.543 -12.897 -1.328 12.976 hybrid contribution 0.731 1.147 -0.672 1.517 sum 1.274 -11.750 -2.000 11.987 Atomic orbital electron populations 1.69986 1.07338 1.28447 1.31018 1.25767 0.94740 1.00775 0.92486 0.86241 0.79794 0.79983 0.79777 1.18948 1.20196 1.18911 1.19851 0.94476 0.89415 1.52933 0.90874 1.17311 0.88278 0.81179 0.79781 1.90815 1.12693 1.83835 1.51699 1.44578 1.09758 1.02211 1.71913 1.24486 0.89551 0.90323 0.95049 1.66455 1.08874 1.21395 1.24555 1.20846 0.96128 0.86343 0.98045 1.23848 0.94874 0.95193 1.25630 1.84752 1.09549 1.02308 1.77689 1.28651 1.24911 0.97218 1.12680 1.07897 0.78564 0.76213 0.76836 1.93598 1.81175 1.35538 1.83641 1.93613 1.84629 1.84809 1.29211 1.29971 1.14369 1.12403 1.15587 1.19796 0.88562 0.94214 1.04862 0.91217 0.75948 0.84377 0.84406 0.84498 0.83916 0.87111 0.87676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -20.61 11.72 55.56 0.65 -19.96 16 2 C 0.09 2.21 5.50 -17.35 -0.10 2.12 16 3 Si 0.92 18.41 29.56 -169.99 -5.02 13.38 16 4 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 5 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 6 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 7 C -0.53 -13.69 9.29 -37.72 -0.35 -14.04 16 8 H 0.07 1.66 7.85 -52.49 -0.41 1.25 16 9 C 0.53 14.14 7.51 -15.12 -0.11 14.03 16 10 O -0.51 -15.83 13.52 5.05 0.07 -15.76 16 11 N -0.64 -13.67 5.35 -14.91 -0.08 -13.75 16 12 C 0.38 7.85 8.25 -88.61 -0.73 7.12 16 13 N -0.49 -10.89 8.55 -9.47 -0.08 -10.97 16 14 C 0.12 2.10 6.61 -82.59 -0.55 1.55 16 15 C -0.27 -4.11 6.35 -35.18 -0.22 -4.33 16 16 S 0.01 0.11 23.39 -107.50 -2.51 -2.40 16 17 C -0.50 -5.34 6.67 36.41 0.24 -5.10 16 18 S 2.42 26.55 5.39 -107.50 -0.58 25.97 16 19 O -0.94 -12.13 18.11 -57.79 -1.05 -13.17 16 20 O -0.93 -13.64 17.81 -57.79 -1.03 -14.67 16 21 C -0.59 -5.60 6.37 36.82 0.23 -5.36 16 22 C -0.03 -0.47 5.77 -27.56 -0.16 -0.62 16 23 H 0.28 6.95 8.29 -40.82 -0.34 6.61 16 24 H 0.41 7.05 8.77 -40.82 -0.36 6.69 16 25 H 0.14 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.14 1.26 8.14 -51.93 -0.42 0.83 16 27 H 0.14 1.01 8.14 -51.93 -0.42 0.58 16 28 H 0.14 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.11 1.56 8.14 -51.93 -0.42 1.13 16 30 H 0.11 1.43 8.09 -51.93 -0.42 1.01 16 LS Contribution 290.73 15.07 4.38 4.38 Total: -1.00 -37.41 290.73 -9.43 -46.84 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -2.44 Total: 4.75 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: -1.74 Total: -4.63 kcal Atomic # 7 Polarization: -45.18 SS G_CDS: 0.49 Total: -44.68 kcal Atomic # 8 Polarization: -41.60 SS G_CDS: -2.01 Total: -43.61 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -5.02 Total: 13.38 kcal Atomic # 16 Polarization: 26.66 SS G_CDS: -3.09 Total: 23.57 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -37.41 -9.43 -46.84 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412224701.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.985 kcal (2) G-P(sol) polarization free energy of solvation -37.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds