Wall clock time and date at job start Tue Mar 31 2020 03:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46907 * 109.46849 * 2 1 4 4 C 1.47009 * 111.00120 * 287.87107 * 3 2 1 5 5 C 1.53098 * 109.25826 * 177.60779 * 4 3 2 6 6 O 1.43014 * 109.25696 * 56.85029 * 5 4 3 7 7 C 1.43019 * 113.73788 * 301.32451 * 6 5 4 8 8 C 1.47021 * 110.99716 * 164.23544 * 3 2 1 9 9 H 1.08999 * 109.54096 * 62.43869 * 8 3 2 10 10 C 1.50700 * 109.50667 * 302.32645 * 8 3 2 11 11 O 1.21277 * 119.99943 * 332.19333 * 10 8 3 12 12 N 1.34774 * 119.99431 * 152.19514 * 10 8 3 13 13 C 1.46504 * 119.99591 * 180.02562 * 12 10 8 14 14 C 1.52999 * 109.47031 * 179.97438 * 13 12 10 15 15 H 1.08999 * 109.47336 * 294.99826 * 14 13 12 16 16 C 1.52997 * 109.47135 * 174.99842 * 14 13 12 17 17 O 1.42901 * 109.47384 * 305.00127 * 16 14 13 18 18 N 1.46501 * 109.46949 * 55.00223 * 14 13 12 19 19 C 1.36938 * 120.00100 * 204.99788 * 18 14 13 20 20 H 1.08003 * 119.99683 * 0.02562 * 19 18 14 21 21 C 1.38810 * 120.00309 * 179.97438 * 19 18 14 22 22 N 1.31615 * 120.00094 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00126 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47330 * 90.00372 * 23 21 19 25 25 H 1.48509 * 109.47175 * 330.00267 * 23 21 19 26 26 H 1.48500 * 109.47405 * 210.00440 * 23 21 19 27 27 H 1.09000 * 109.46799 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47003 * 299.99784 * 1 2 3 29 29 H 1.08998 * 109.47429 * 59.99781 * 1 2 3 30 30 H 1.08996 * 109.47264 * 240.00845 * 2 1 3 31 31 H 1.08998 * 109.47429 * 120.00219 * 2 1 3 32 32 H 1.09006 * 109.50448 * 57.67692 * 4 3 2 33 33 H 1.09001 * 109.54371 * 297.56263 * 4 3 2 34 34 H 1.09001 * 109.50887 * 296.91744 * 5 4 3 35 35 H 1.08999 * 109.50813 * 176.78498 * 5 4 3 36 36 H 1.08994 * 109.51164 * 298.74124 * 7 6 5 37 37 H 1.09007 * 109.50718 * 178.60522 * 7 6 5 38 38 H 0.96995 * 120.00193 * 359.97438 * 12 10 8 39 39 H 1.09000 * 109.47104 * 59.99946 * 13 12 10 40 40 H 1.08999 * 109.47197 * 299.99724 * 13 12 10 41 41 H 1.08998 * 109.47508 * 64.99949 * 16 14 13 42 42 H 1.09000 * 109.47297 * 185.00488 * 16 14 13 43 43 H 0.96698 * 114.00466 * 180.02562 * 17 16 14 44 44 H 0.97001 * 120.00110 * 24.99781 * 18 14 13 45 45 H 0.97006 * 119.99559 * 0.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.7981 2.0222 -1.3062 5 6 2.2669 3.4783 -1.2438 6 8 3.6412 3.5148 -0.8497 7 6 3.8929 2.9035 0.4185 8 6 3.4406 1.4415 0.3729 9 1 4.0329 0.9001 -0.3647 10 6 3.6301 0.8136 1.7297 11 8 2.7223 0.8217 2.5338 12 7 4.8085 0.2431 2.0494 13 6 4.9926 -0.3679 3.3682 14 6 6.4082 -0.9389 3.4726 15 1 6.5248 -1.7540 2.7584 16 6 6.6426 -1.4653 4.8899 17 8 6.3763 -0.4262 5.8341 18 7 7.3826 0.1139 3.1754 19 6 8.6259 -0.2164 2.7059 20 1 8.8879 -1.2532 2.5544 21 6 9.5490 0.7811 2.4238 22 7 9.2295 2.0446 2.6080 23 14 11.2447 0.3304 1.7828 24 1 11.2161 0.2817 0.2989 25 1 11.6374 -0.9995 2.3142 26 1 12.2286 1.3507 2.2257 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 0.7362 1.9919 -1.5505 33 1 2.3631 1.4904 -2.0718 34 1 1.6652 4.0236 -0.5167 35 1 2.1576 3.9383 -2.2259 36 1 3.3384 3.4320 1.1939 37 1 4.9596 2.9477 0.6386 38 1 5.5345 0.2363 1.4061 39 1 4.2669 -1.1701 3.5015 40 1 4.8468 0.3863 4.1416 41 1 5.9772 -2.3076 5.0794 42 1 7.6781 -1.7905 4.9901 43 1 6.5051 -0.6895 6.7556 44 1 7.1471 1.0451 3.3111 45 1 8.3490 2.2785 2.9412 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486010224.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:37 Heat of formation + Delta-G solvation = -106.268218 kcal Electronic energy + Delta-G solvation = -26094.363718 eV Core-core repulsion = 22340.668791 eV Total energy + Delta-G solvation = -3753.694927 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 301.183 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.46915 -38.65552 -37.22637 -36.10152 -35.00289 -33.72666 -32.06400 -31.12717 -30.98171 -28.13203 -26.82518 -25.69803 -24.28626 -23.43622 -22.18253 -21.09863 -20.33467 -19.70958 -17.77848 -17.28228 -16.76407 -16.58557 -16.41179 -15.88136 -15.21103 -15.08972 -14.79660 -14.59478 -14.27417 -14.00248 -13.85351 -13.70847 -13.59304 -13.36291 -13.03028 -12.76425 -12.35768 -12.07774 -11.90615 -11.79536 -11.52141 -11.46748 -10.97519 -10.88490 -10.77383 -10.66172 -10.45316 -10.07727 -9.94697 -9.56131 -9.41603 -9.21644 -9.00711 -8.70358 -8.51257 -7.13193 -6.16169 -3.18125 2.76519 3.20067 3.47113 3.51299 3.62032 3.65654 3.91754 4.59026 4.67426 4.77464 4.81958 4.83208 4.94933 5.01651 5.05841 5.21434 5.27913 5.30227 5.38349 5.41463 5.42391 5.51899 5.58200 5.64305 5.75150 5.78983 5.82278 5.90356 5.92146 5.92925 6.11936 6.23202 6.37205 6.61956 6.70196 6.79914 6.82229 6.99940 7.71274 7.83021 8.10623 8.47619 8.69606 9.13601 10.00402 10.15694 11.31373 Molecular weight = 301.18amu Principal moments of inertia in cm(-1) A = 0.014253 B = 0.004314 C = 0.003593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.086467 B = 6488.515966 C = 7791.775554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.048 3.952 3 N -0.514 5.514 4 C 0.018 3.982 5 C 0.060 3.940 6 O -0.377 6.377 7 C 0.077 3.923 8 C 0.033 3.967 9 H 0.068 0.932 10 C 0.516 3.484 11 O -0.528 6.528 12 N -0.714 5.714 13 C 0.119 3.881 14 C 0.172 3.828 15 H 0.066 0.934 16 C 0.060 3.940 17 O -0.562 6.562 18 N -0.724 5.724 19 C -0.341 4.341 20 H 0.064 0.936 21 C -0.038 4.038 22 N -0.937 5.937 23 Si 1.081 2.919 24 H -0.295 1.295 25 H -0.296 1.296 26 H -0.288 1.288 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.051 0.949 30 H 0.032 0.968 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.043 0.957 34 H 0.061 0.939 35 H 0.099 0.901 36 H 0.068 0.932 37 H 0.110 0.890 38 H 0.408 0.592 39 H 0.061 0.939 40 H 0.076 0.924 41 H 0.027 0.973 42 H 0.049 0.951 43 H 0.365 0.635 44 H 0.372 0.628 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.623 -4.158 -5.593 16.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.080 4.080 3 N -0.240 5.240 4 C -0.110 4.110 5 C -0.017 4.017 6 O -0.295 6.295 7 C -0.001 4.001 8 C -0.079 4.079 9 H 0.086 0.914 10 C 0.300 3.700 11 O -0.405 6.405 12 N -0.366 5.366 13 C -0.006 4.006 14 C 0.060 3.940 15 H 0.084 0.916 16 C -0.022 4.022 17 O -0.365 6.365 18 N -0.367 5.367 19 C -0.472 4.472 20 H 0.082 0.918 21 C -0.237 4.237 22 N -0.581 5.581 23 Si 0.912 3.088 24 H -0.223 1.223 25 H -0.223 1.223 26 H -0.214 1.214 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.070 0.930 30 H 0.050 0.950 31 H 0.099 0.901 32 H 0.109 0.891 33 H 0.062 0.938 34 H 0.080 0.920 35 H 0.117 0.883 36 H 0.086 0.914 37 H 0.128 0.872 38 H 0.245 0.755 39 H 0.079 0.921 40 H 0.094 0.906 41 H 0.046 0.954 42 H 0.068 0.932 43 H 0.210 0.790 44 H 0.205 0.795 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.969 -3.076 -5.874 15.463 hybrid contribution -0.694 -1.535 0.401 1.732 sum -14.663 -4.611 -5.474 16.316 Atomic orbital electron populations 1.21701 0.94455 1.01362 1.02355 1.22171 0.96693 0.88074 1.01050 1.62009 1.15023 1.18461 1.28520 1.22876 1.02209 0.96124 0.89822 1.22711 0.83107 0.94928 1.00995 1.88049 1.25769 1.78817 1.36817 1.22582 1.02327 0.88944 0.86200 1.22298 0.90718 0.99267 0.95648 0.91377 1.20058 0.82733 0.78684 0.88500 1.90684 1.41267 1.57846 1.50658 1.46075 1.14725 1.57861 1.17969 1.21563 0.96987 0.97908 0.84101 1.20519 0.87912 0.92909 0.92622 0.91625 1.23014 0.98742 0.88781 0.91627 1.86545 1.91983 1.39899 1.18118 1.42362 1.12150 1.03461 1.78719 1.20032 0.91477 0.94398 1.41275 0.91791 1.25729 1.03838 0.93298 1.00826 1.70840 1.22901 1.16716 1.47684 0.83219 0.75290 0.74383 0.75883 1.22280 1.22269 1.21390 0.92410 0.91515 0.93024 0.95010 0.90060 0.89134 0.93830 0.92042 0.88303 0.91404 0.87187 0.75548 0.92083 0.90593 0.95443 0.93242 0.79012 0.79453 0.93120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.96 37.16 0.37 -1.08 16 2 C 0.05 0.59 5.36 -3.82 -0.02 0.56 16 3 N -0.51 -6.79 4.23 -227.72 -0.96 -7.76 16 4 C 0.02 0.19 5.46 -3.71 -0.02 0.17 16 5 C 0.06 0.65 7.01 37.21 0.26 0.91 16 6 O -0.38 -5.32 10.83 -35.23 -0.38 -5.70 16 7 C 0.08 1.12 6.27 37.21 0.23 1.36 16 8 C 0.03 0.47 2.38 -68.75 -0.16 0.31 16 9 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 10 C 0.52 8.60 5.75 -10.99 -0.06 8.53 16 11 O -0.53 -10.28 15.58 5.56 0.09 -10.19 16 12 N -0.71 -11.89 5.39 -60.29 -0.32 -12.22 16 13 C 0.12 2.07 5.12 -4.04 -0.02 2.05 16 14 C 0.17 3.22 2.84 -67.93 -0.19 3.03 16 15 H 0.07 1.20 8.08 -51.93 -0.42 0.78 16 16 C 0.06 1.03 6.86 37.16 0.25 1.29 16 17 O -0.56 -9.92 12.64 -35.23 -0.45 -10.37 16 18 N -0.72 -16.89 4.51 -53.43 -0.24 -17.13 16 19 C -0.34 -8.96 9.93 -15.06 -0.15 -9.11 16 20 H 0.06 1.65 7.83 -52.48 -0.41 1.24 16 21 C -0.04 -1.06 5.50 -17.43 -0.10 -1.15 16 22 N -0.94 -28.00 13.70 55.49 0.76 -27.24 16 23 Si 1.08 25.04 29.92 -169.99 -5.09 19.96 16 24 H -0.30 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.30 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.05 0.46 6.73 -51.93 -0.35 0.11 16 30 H 0.03 0.36 8.05 -51.93 -0.42 -0.06 16 31 H 0.08 1.17 5.96 -51.93 -0.31 0.86 16 32 H 0.09 0.80 6.63 -51.93 -0.34 0.45 16 33 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.11 1.64 8.14 -51.92 -0.42 1.22 16 38 H 0.41 6.90 8.14 -40.82 -0.33 6.57 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.08 1.50 7.39 -51.93 -0.38 1.11 16 41 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.37 4.65 9.12 45.56 0.42 5.06 16 44 H 0.37 9.37 6.63 -40.82 -0.27 9.10 16 45 H 0.26 7.66 6.77 -40.82 -0.28 7.39 16 LS Contribution 361.43 15.07 5.45 5.45 Total: -1.00 -32.67 361.43 -7.30 -39.97 By element: Atomic # 1 Polarization: 24.90 SS G_CDS: -6.55 Total: 18.36 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: 0.39 Total: 6.87 kcal Atomic # 7 Polarization: -63.57 SS G_CDS: -0.77 Total: -64.34 kcal Atomic # 8 Polarization: -25.52 SS G_CDS: -0.74 Total: -26.26 kcal Atomic # 14 Polarization: 25.04 SS G_CDS: -5.09 Total: 19.96 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.67 -7.30 -39.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486010224.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.295 kcal (2) G-P(sol) polarization free energy of solvation -32.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds