Wall clock time and date at job start Tue Mar 31 2020 03:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46907 * 109.46849 * 2 1 4 4 C 1.47009 * 111.00120 * 287.87107 * 3 2 1 5 5 C 1.53098 * 109.25826 * 177.60779 * 4 3 2 6 6 O 1.43014 * 109.25696 * 56.85029 * 5 4 3 7 7 C 1.43019 * 113.73788 * 301.32451 * 6 5 4 8 8 C 1.47021 * 110.99716 * 164.23544 * 3 2 1 9 9 H 1.08999 * 109.54096 * 62.43869 * 8 3 2 10 10 C 1.50700 * 109.50667 * 302.32645 * 8 3 2 11 11 O 1.21277 * 119.99943 * 332.19333 * 10 8 3 12 12 N 1.34774 * 119.99431 * 152.19514 * 10 8 3 13 13 C 1.46504 * 119.99591 * 180.02562 * 12 10 8 14 14 C 1.52999 * 109.47031 * 179.97438 * 13 12 10 15 15 H 1.08999 * 109.47336 * 294.99826 * 14 13 12 16 16 C 1.52997 * 109.47135 * 174.99842 * 14 13 12 17 17 O 1.42901 * 109.47384 * 305.00127 * 16 14 13 18 18 N 1.46501 * 109.46949 * 55.00223 * 14 13 12 19 19 C 1.36938 * 120.00100 * 204.99788 * 18 14 13 20 20 H 1.08003 * 119.99683 * 0.02562 * 19 18 14 21 21 C 1.38810 * 120.00309 * 179.97438 * 19 18 14 22 22 N 1.31615 * 120.00094 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00126 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47330 * 90.00372 * 23 21 19 25 25 H 1.48509 * 109.47175 * 330.00267 * 23 21 19 26 26 H 1.48500 * 109.47405 * 210.00440 * 23 21 19 27 27 H 1.09000 * 109.46799 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47003 * 299.99784 * 1 2 3 29 29 H 1.08998 * 109.47429 * 59.99781 * 1 2 3 30 30 H 1.08996 * 109.47264 * 240.00845 * 2 1 3 31 31 H 1.08998 * 109.47429 * 120.00219 * 2 1 3 32 32 H 1.09006 * 109.50448 * 57.67692 * 4 3 2 33 33 H 1.09001 * 109.54371 * 297.56263 * 4 3 2 34 34 H 1.09001 * 109.50887 * 296.91744 * 5 4 3 35 35 H 1.08999 * 109.50813 * 176.78498 * 5 4 3 36 36 H 1.08994 * 109.51164 * 298.74124 * 7 6 5 37 37 H 1.09007 * 109.50718 * 178.60522 * 7 6 5 38 38 H 0.96995 * 120.00193 * 359.97438 * 12 10 8 39 39 H 1.09000 * 109.47104 * 59.99946 * 13 12 10 40 40 H 1.08999 * 109.47197 * 299.99724 * 13 12 10 41 41 H 1.08998 * 109.47508 * 64.99949 * 16 14 13 42 42 H 1.09000 * 109.47297 * 185.00488 * 16 14 13 43 43 H 0.96698 * 114.00466 * 180.02562 * 17 16 14 44 44 H 0.97001 * 120.00110 * 24.99781 * 18 14 13 45 45 H 0.97006 * 119.99559 * 0.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.7981 2.0222 -1.3062 5 6 2.2669 3.4783 -1.2438 6 8 3.6412 3.5148 -0.8497 7 6 3.8929 2.9035 0.4185 8 6 3.4406 1.4415 0.3729 9 1 4.0329 0.9001 -0.3647 10 6 3.6301 0.8136 1.7297 11 8 2.7223 0.8217 2.5338 12 7 4.8085 0.2431 2.0494 13 6 4.9926 -0.3679 3.3682 14 6 6.4082 -0.9389 3.4726 15 1 6.5248 -1.7540 2.7584 16 6 6.6426 -1.4653 4.8899 17 8 6.3763 -0.4262 5.8341 18 7 7.3826 0.1139 3.1754 19 6 8.6259 -0.2164 2.7059 20 1 8.8879 -1.2532 2.5544 21 6 9.5490 0.7811 2.4238 22 7 9.2295 2.0446 2.6080 23 14 11.2447 0.3304 1.7828 24 1 11.2161 0.2817 0.2989 25 1 11.6374 -0.9995 2.3142 26 1 12.2286 1.3507 2.2257 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 0.7362 1.9919 -1.5505 33 1 2.3631 1.4904 -2.0718 34 1 1.6652 4.0236 -0.5167 35 1 2.1576 3.9383 -2.2259 36 1 3.3384 3.4320 1.1939 37 1 4.9596 2.9477 0.6386 38 1 5.5345 0.2363 1.4061 39 1 4.2669 -1.1701 3.5015 40 1 4.8468 0.3863 4.1416 41 1 5.9772 -2.3076 5.0794 42 1 7.6781 -1.7905 4.9901 43 1 6.5051 -0.6895 6.7556 44 1 7.1471 1.0451 3.3111 45 1 8.3490 2.2785 2.9412 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486010224.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:37 Heat of formation + Delta-G solvation = -134.867071 kcal Electronic energy + Delta-G solvation = -26095.603857 eV Core-core repulsion = 22340.668791 eV Total energy + Delta-G solvation = -3754.935066 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 301.183 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.66033 -39.90217 -38.69645 -37.14529 -36.53152 -35.42199 -33.46902 -32.55685 -31.88468 -29.85795 -27.85888 -26.98713 -25.67061 -25.21300 -23.13758 -22.20331 -21.85371 -20.95728 -19.57562 -18.60091 -18.25784 -17.75392 -17.56995 -17.19373 -16.35543 -16.34221 -16.07619 -15.95469 -15.64662 -15.46471 -15.23338 -15.10946 -15.00218 -14.60842 -14.33428 -13.96229 -13.51944 -13.23722 -13.06946 -12.94071 -12.76359 -12.70428 -12.54772 -12.46722 -12.08857 -11.91714 -11.87323 -11.62979 -11.27711 -11.13198 -10.97152 -10.79325 -10.66501 -10.12641 -9.50491 -9.10684 -8.32118 -5.27772 1.43068 1.61532 1.71148 1.84468 1.95807 2.58312 2.73264 2.86255 3.43547 3.50495 3.59972 3.64818 3.73375 3.81107 3.85731 3.91147 4.02636 4.18511 4.29237 4.32321 4.36712 4.45517 4.48427 4.51314 4.55595 4.56239 4.70333 4.74681 4.86643 4.89497 4.91242 5.01874 5.11733 5.28115 5.37876 5.64274 5.70634 5.90062 5.98447 6.45628 6.54010 6.96267 7.10554 7.12379 8.00827 8.15002 9.18445 Molecular weight = 301.18amu Principal moments of inertia in cm(-1) A = 0.014253 B = 0.004314 C = 0.003593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.086467 B = 6488.515966 C = 7791.775554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.047 3.953 3 N -0.528 5.528 4 C 0.019 3.981 5 C 0.053 3.947 6 O -0.391 6.391 7 C 0.083 3.917 8 C 0.041 3.959 9 H 0.074 0.926 10 C 0.519 3.481 11 O -0.558 6.558 12 N -0.711 5.711 13 C 0.132 3.868 14 C 0.167 3.833 15 H 0.076 0.924 16 C 0.065 3.935 17 O -0.584 6.584 18 N -0.733 5.733 19 C -0.327 4.327 20 H 0.071 0.929 21 C -0.099 4.099 22 N -0.974 5.974 23 Si 1.127 2.873 24 H -0.285 1.285 25 H -0.274 1.274 26 H -0.301 1.301 27 H 0.071 0.929 28 H 0.048 0.952 29 H 0.070 0.930 30 H 0.044 0.956 31 H 0.055 0.945 32 H 0.115 0.885 33 H 0.048 0.952 34 H 0.061 0.939 35 H 0.129 0.871 36 H 0.057 0.943 37 H 0.098 0.902 38 H 0.408 0.592 39 H 0.078 0.922 40 H 0.052 0.948 41 H 0.067 0.933 42 H 0.034 0.966 43 H 0.386 0.614 44 H 0.359 0.641 45 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.519 -5.660 -6.806 17.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.080 4.080 3 N -0.254 5.254 4 C -0.108 4.108 5 C -0.023 4.023 6 O -0.309 6.309 7 C 0.005 3.995 8 C -0.072 4.072 9 H 0.092 0.908 10 C 0.305 3.695 11 O -0.436 6.436 12 N -0.363 5.363 13 C 0.007 3.993 14 C 0.058 3.942 15 H 0.094 0.906 16 C -0.016 4.016 17 O -0.391 6.391 18 N -0.375 5.375 19 C -0.458 4.458 20 H 0.089 0.911 21 C -0.291 4.291 22 N -0.621 5.621 23 Si 0.953 3.047 24 H -0.212 1.212 25 H -0.199 1.199 26 H -0.228 1.228 27 H 0.090 0.910 28 H 0.068 0.932 29 H 0.088 0.912 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.133 0.867 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.146 0.854 36 H 0.076 0.924 37 H 0.116 0.884 38 H 0.244 0.756 39 H 0.096 0.904 40 H 0.070 0.930 41 H 0.085 0.915 42 H 0.053 0.947 43 H 0.235 0.765 44 H 0.191 0.809 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -14.901 -4.639 -7.072 17.134 hybrid contribution -0.531 -1.117 0.813 1.479 sum -15.431 -5.755 -6.260 17.619 Atomic orbital electron populations 1.21659 0.92801 1.02356 1.02375 1.22184 0.98013 0.87482 1.00337 1.62051 1.13807 1.19274 1.30314 1.22978 1.03777 0.95527 0.88515 1.23001 0.81398 0.95505 1.02427 1.88029 1.27983 1.78762 1.36150 1.22403 1.01482 0.89142 0.86516 1.22177 0.92087 0.98717 0.94192 0.90781 1.20434 0.82040 0.77939 0.89112 1.90663 1.42123 1.58975 1.51805 1.46061 1.14789 1.57837 1.17644 1.21377 0.96538 0.97565 0.83815 1.20767 0.87393 0.92005 0.94068 0.90590 1.22846 0.98812 0.89551 0.90344 1.86500 1.92015 1.40762 1.19847 1.42466 1.12244 1.03838 1.78943 1.20350 0.92187 0.94453 1.38831 0.91103 1.26993 1.07232 0.92980 1.01860 1.70957 1.22442 1.18129 1.50612 0.82619 0.71467 0.74674 0.75965 1.21170 1.19949 1.22768 0.90992 0.93232 0.91156 0.93748 0.92636 0.86694 0.93358 0.92090 0.85356 0.92439 0.88385 0.75610 0.90364 0.92983 0.91522 0.94719 0.76533 0.80910 0.94624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 9.96 71.98 0.72 -1.78 16 2 C 0.05 1.10 5.36 86.30 0.46 1.56 16 3 N -0.53 -13.36 4.23 -874.37 -3.70 -17.06 16 4 C 0.02 0.37 5.46 86.32 0.47 0.84 16 5 C 0.05 1.05 7.01 72.01 0.50 1.55 16 6 O -0.39 -10.80 10.83 -148.98 -1.61 -12.41 16 7 C 0.08 2.45 6.27 72.02 0.45 2.90 16 8 C 0.04 1.16 2.38 44.18 0.11 1.27 16 9 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 10 C 0.52 17.47 5.75 87.66 0.50 17.98 16 11 O -0.56 -21.97 15.58 -3.02 -0.05 -22.02 16 12 N -0.71 -23.87 5.39 -463.06 -2.49 -26.36 16 13 C 0.13 4.54 5.12 86.38 0.44 4.98 16 14 C 0.17 6.11 2.84 44.99 0.13 6.24 16 15 H 0.08 2.64 8.08 -2.39 -0.02 2.62 16 16 C 0.07 2.14 6.86 71.98 0.49 2.63 16 17 O -0.58 -20.07 12.64 -148.98 -1.88 -21.95 16 18 N -0.73 -34.34 4.51 -322.94 -1.46 -35.79 16 19 C -0.33 -17.04 9.93 84.03 0.83 -16.21 16 20 H 0.07 3.55 7.83 -2.91 -0.02 3.53 16 21 C -0.10 -5.48 5.50 84.86 0.47 -5.01 16 22 N -0.97 -59.47 13.70 21.65 0.30 -59.17 16 23 Si 1.13 50.28 29.92 68.60 2.05 52.33 16 24 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 25 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 26 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 27 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.07 1.03 6.73 -2.39 -0.02 1.01 16 30 H 0.04 0.91 8.05 -2.39 -0.02 0.89 16 31 H 0.06 1.58 5.96 -2.39 -0.01 1.56 16 32 H 0.12 1.63 6.63 -2.38 -0.02 1.61 16 33 H 0.05 0.89 8.14 -2.39 -0.02 0.88 16 34 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.13 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.10 3.08 8.14 -2.38 -0.02 3.06 16 38 H 0.41 13.91 8.14 -92.71 -0.75 13.15 16 39 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 40 H 0.05 2.07 7.39 -2.39 -0.02 2.05 16 41 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.39 9.29 9.12 -74.06 -0.68 8.61 16 44 H 0.36 18.60 6.63 -92.71 -0.61 17.99 16 45 H 0.24 15.02 6.77 -92.70 -0.63 14.39 16 Total: -1.00 -70.82 361.43 -4.15 -74.97 By element: Atomic # 1 Polarization: 51.40 SS G_CDS: -0.89 Total: 50.51 kcal Atomic # 6 Polarization: 11.37 SS G_CDS: 5.58 Total: 16.95 kcal Atomic # 7 Polarization: -131.03 SS G_CDS: -7.35 Total: -138.38 kcal Atomic # 8 Polarization: -52.84 SS G_CDS: -3.54 Total: -56.38 kcal Atomic # 14 Polarization: 50.28 SS G_CDS: 2.05 Total: 52.33 kcal Total: -70.82 -4.15 -74.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486010224.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.899 kcal (2) G-P(sol) polarization free energy of solvation -70.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds