Wall clock time and date at job start Tue Mar 31 2020 03:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52989 * 109.46916 * 2 1 4 4 F 1.39899 * 109.46996 * 239.99921 * 2 1 3 5 5 C 1.50700 * 109.47138 * 120.00004 * 2 1 3 6 6 O 1.21278 * 120.00416 * 250.00155 * 5 2 1 7 7 N 1.34780 * 120.00154 * 69.99824 * 5 2 1 8 8 C 1.46497 * 120.00131 * 179.97438 * 7 5 2 9 9 H 1.08996 * 110.90514 * 322.58739 * 8 7 5 10 10 C 1.55142 * 110.98974 * 86.45815 * 8 7 5 11 11 C 1.54312 * 103.17714 * 153.83170 * 10 8 7 12 12 N 1.47443 * 107.23612 * 337.62814 * 11 10 8 13 13 C 1.46900 * 111.00227 * 236.74273 * 12 11 10 14 14 C 1.50699 * 109.47247 * 290.12346 * 13 12 11 15 15 O 1.21293 * 119.99699 * 359.97438 * 14 13 12 16 16 N 1.34778 * 120.00264 * 180.02562 * 14 13 12 17 17 C 1.37090 * 120.00118 * 180.02562 * 16 14 13 18 18 H 1.08009 * 120.00174 * 359.97438 * 17 16 14 19 19 C 1.38954 * 120.00130 * 179.97438 * 17 16 14 20 20 N 1.31410 * 119.99704 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99915 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47328 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.47111 * 120.00180 * 21 19 17 24 24 H 1.48505 * 109.46945 * 239.99746 * 21 19 17 25 25 C 1.47844 * 108.56494 * 359.01050 * 12 11 10 26 26 H 1.09000 * 109.47051 * 299.99839 * 1 2 3 27 27 H 1.09003 * 109.47341 * 60.00008 * 1 2 3 28 28 H 1.09009 * 109.47346 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.47110 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47431 * 299.99840 * 3 2 1 31 31 H 1.08995 * 109.47547 * 60.00040 * 3 2 1 32 32 H 0.97008 * 119.99898 * 0.02562 * 7 5 2 33 33 H 1.09002 * 110.70816 * 35.36018 * 10 8 7 34 34 H 1.09005 * 110.70106 * 272.30158 * 10 8 7 35 35 H 1.08997 * 109.89327 * 97.03090 * 11 10 8 36 36 H 1.09001 * 109.89155 * 218.05905 * 11 10 8 37 37 H 1.08998 * 109.46669 * 50.12444 * 13 12 11 38 38 H 1.08999 * 109.47032 * 170.11876 * 13 12 11 39 39 H 0.96997 * 119.99233 * 359.97438 * 16 14 13 40 40 H 0.96997 * 119.99797 * 180.02562 * 20 19 17 41 41 H 1.08999 * 110.37744 * 142.93014 * 25 12 11 42 42 H 1.09007 * 110.37325 * 265.15824 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0323 -0.7104 1.2305 6 8 2.5731 -0.0817 2.1154 7 7 1.8806 -2.0445 1.3476 8 6 2.3694 -2.7352 2.5435 9 1 3.3081 -2.3007 2.8871 10 6 1.3032 -2.7174 3.6703 11 6 1.6493 -3.9704 4.5018 12 7 2.4067 -4.8816 3.6244 13 6 1.7539 -6.1948 3.5398 14 6 1.8876 -6.9083 4.8604 15 8 2.4700 -6.3754 5.7813 16 7 1.3610 -8.1389 5.0179 17 6 1.4822 -8.7878 6.2194 18 1 2.0001 -8.3130 7.0397 19 6 0.9389 -10.0563 6.3819 20 7 0.3093 -10.6342 5.3837 21 14 1.1047 -10.9406 8.0189 22 1 1.8520 -10.0816 8.9722 23 1 -0.2459 -11.2273 8.5657 24 1 1.8393 -12.2160 7.8204 25 6 2.5221 -4.2602 2.2878 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1300 1.4424 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.4483 -2.5475 0.6396 33 1 0.2996 -2.7972 3.2526 34 1 1.3968 -1.8154 4.2752 35 1 2.2599 -3.6891 5.3598 36 1 0.7337 -4.4547 4.8414 37 1 0.6980 -6.0610 3.3043 38 1 2.2285 -6.7867 2.7572 39 1 0.8957 -8.5651 4.2812 40 1 -0.0703 -11.5195 5.4972 41 1 3.4977 -4.4757 1.8521 42 1 1.7275 -4.6180 1.6330 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692386015.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:11 Heat of formation + Delta-G solvation = -116.906353 kcal Electronic energy + Delta-G solvation = -24555.558416 eV Core-core repulsion = 20677.941880 eV Total energy + Delta-G solvation = -3877.616536 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 301.159 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.30991 -40.29581 -38.97722 -37.54289 -34.68611 -34.07218 -33.80622 -31.36696 -30.83687 -28.69630 -27.89799 -26.63265 -24.46397 -23.82301 -21.22533 -21.13769 -20.30099 -19.08913 -18.30694 -17.86223 -16.87197 -16.28665 -16.03483 -15.79875 -15.54857 -15.18556 -14.62228 -14.50388 -14.20541 -13.92570 -13.62045 -13.40870 -13.37477 -13.10685 -12.97833 -12.81362 -12.54963 -12.47480 -12.29668 -11.93044 -11.72441 -11.52579 -11.47211 -11.42361 -11.24760 -11.04453 -10.64998 -10.34059 -10.22163 -10.09298 -9.50994 -9.37251 -8.47252 -7.97557 -7.93367 -6.41489 -3.82007 2.09589 2.58676 3.16518 3.27084 3.34509 3.83064 3.91142 3.95957 4.05798 4.19636 4.26505 4.35273 4.45212 4.65645 4.97946 4.99519 5.05288 5.12921 5.19583 5.24454 5.25147 5.36032 5.43071 5.50892 5.57152 5.67355 5.70938 5.75771 5.87740 5.91486 6.04224 6.16850 6.28620 6.44025 7.04309 7.17206 7.19508 7.55883 7.74003 8.06903 8.62451 9.19011 9.55013 10.07066 10.76503 Molecular weight = 301.16amu Principal moments of inertia in cm(-1) A = 0.042932 B = 0.002423 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.044825 B =11554.312289 C =11802.155553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.102 3.898 3 C -0.158 4.158 4 F -0.196 7.196 5 C 0.502 3.498 6 O -0.519 6.519 7 N -0.710 5.710 8 C 0.134 3.866 9 H 0.106 0.894 10 C -0.154 4.154 11 C 0.058 3.942 12 N -0.501 5.501 13 C 0.041 3.959 14 C 0.444 3.556 15 O -0.575 6.575 16 N -0.567 5.567 17 C -0.296 4.296 18 H 0.103 0.897 19 C 0.021 3.979 20 N -0.903 5.903 21 Si 0.929 3.071 22 H -0.268 1.268 23 H -0.282 1.282 24 H -0.281 1.281 25 C 0.038 3.962 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.403 0.597 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.059 0.941 37 H 0.050 0.950 38 H 0.089 0.911 39 H 0.391 0.609 40 H 0.270 0.730 41 H 0.088 0.912 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.270 18.838 -14.578 23.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.081 3.919 3 C -0.216 4.216 4 F -0.176 7.176 5 C 0.285 3.715 6 O -0.394 6.394 7 N -0.361 5.361 8 C 0.029 3.971 9 H 0.124 0.876 10 C -0.193 4.193 11 C -0.070 4.070 12 N -0.225 5.225 13 C -0.091 4.091 14 C 0.229 3.771 15 O -0.458 6.458 16 N -0.204 5.204 17 C -0.426 4.426 18 H 0.121 0.879 19 C -0.180 4.180 20 N -0.545 5.545 21 Si 0.756 3.244 22 H -0.192 1.192 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.090 4.090 26 H 0.102 0.898 27 H 0.101 0.899 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.104 0.896 32 H 0.238 0.762 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.107 0.893 39 H 0.224 0.776 40 H 0.080 0.920 41 H 0.106 0.894 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.053 19.345 -13.110 23.393 hybrid contribution -1.338 -1.156 -0.517 1.842 sum -2.391 18.190 -13.627 22.854 Atomic orbital electron populations 1.22394 0.91365 1.04413 1.04835 1.21225 0.96459 0.93627 0.80615 1.22176 1.03239 0.92157 1.04049 1.92922 1.90262 1.82663 1.51792 1.20792 0.79443 0.82768 0.88518 1.90752 1.41583 1.65699 1.41362 1.45918 1.60603 1.07498 1.22075 1.22270 0.98415 0.92097 0.84281 0.87569 1.23241 0.98485 1.00020 0.97575 1.22699 0.97490 0.90496 0.96269 1.63241 1.49892 1.01841 1.07535 1.22100 0.97224 0.91116 0.98646 1.19711 0.84797 0.83320 0.89264 1.90530 1.45929 1.66967 1.42400 1.41864 1.49854 1.14305 1.14356 1.19744 1.33635 0.98318 0.90911 0.87877 1.25256 0.96731 0.96931 0.99126 1.69618 1.37197 1.16232 1.31428 0.85806 0.77941 0.79105 0.81536 1.19216 1.20809 1.20753 1.23336 1.02133 0.91558 0.91991 0.89844 0.89894 0.90790 0.90714 0.90604 0.89639 0.76195 0.91448 0.90242 0.89530 0.92266 0.93239 0.89303 0.77556 0.91968 0.89396 0.93181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.95 8.91 37.16 0.33 -0.62 16 2 C 0.10 0.82 1.53 -91.78 -0.14 0.68 16 3 C -0.16 -1.13 8.28 37.15 0.31 -0.83 16 4 F -0.20 -1.76 16.74 2.25 0.04 -1.72 16 5 C 0.50 5.33 6.79 -10.98 -0.07 5.26 16 6 O -0.52 -7.28 15.72 5.56 0.09 -7.19 16 7 N -0.71 -6.76 5.21 -51.49 -0.27 -7.03 16 8 C 0.13 1.56 3.33 -65.54 -0.22 1.34 16 9 H 0.11 1.42 7.73 -51.93 -0.40 1.02 16 10 C -0.15 -1.89 6.62 -24.91 -0.16 -2.05 16 11 C 0.06 0.92 5.64 -2.84 -0.02 0.90 16 12 N -0.50 -8.14 4.85 -232.38 -1.13 -9.27 16 13 C 0.04 0.71 5.03 -4.98 -0.03 0.68 16 14 C 0.44 10.42 7.43 -10.99 -0.08 10.34 16 15 O -0.57 -15.56 15.12 5.55 0.08 -15.47 16 16 N -0.57 -14.28 5.29 -10.96 -0.06 -14.34 16 17 C -0.30 -8.25 9.68 -14.94 -0.14 -8.40 16 18 H 0.10 3.03 7.16 -52.48 -0.38 2.65 16 19 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 20 N -0.90 -24.51 13.05 55.50 0.72 -23.79 16 21 Si 0.93 21.07 29.55 -169.99 -5.02 16.05 16 22 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 25 C 0.04 0.46 6.33 -2.04 -0.01 0.45 16 26 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.37 8.14 -51.92 -0.42 -0.05 16 29 H 0.07 0.61 8.14 -51.92 -0.42 0.18 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.61 7.99 -51.93 -0.41 0.19 16 32 H 0.40 2.94 8.50 -40.82 -0.35 2.59 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 36 H 0.06 1.00 7.32 -51.93 -0.38 0.62 16 37 H 0.05 0.77 7.96 -51.93 -0.41 0.36 16 38 H 0.09 1.39 8.07 -51.93 -0.42 0.97 16 39 H 0.39 9.40 7.90 -40.82 -0.32 9.08 16 40 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 41 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.05 0.51 7.68 -51.93 -0.40 0.11 16 LS Contribution 353.84 15.07 5.33 5.33 Total: -1.00 -32.92 353.84 -6.96 -39.88 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -6.41 Total: 9.35 kcal Atomic # 6 Polarization: 8.54 SS G_CDS: -0.34 Total: 8.21 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: -0.73 Total: -54.43 kcal Atomic # 8 Polarization: -22.83 SS G_CDS: 0.17 Total: -22.66 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.04 Total: -1.72 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.92 -6.96 -39.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692386015.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.027 kcal (2) G-P(sol) polarization free energy of solvation -32.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds