Wall clock time and date at job start Tue Mar 31 2020 03:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52989 * 109.46916 * 2 1 4 4 F 1.39899 * 109.46996 * 239.99921 * 2 1 3 5 5 C 1.50700 * 109.47138 * 120.00004 * 2 1 3 6 6 O 1.21278 * 120.00416 * 250.00155 * 5 2 1 7 7 N 1.34780 * 120.00154 * 69.99824 * 5 2 1 8 8 C 1.46497 * 120.00131 * 179.97438 * 7 5 2 9 9 H 1.08996 * 110.90514 * 322.58739 * 8 7 5 10 10 C 1.55142 * 110.98974 * 86.45815 * 8 7 5 11 11 C 1.54312 * 103.17714 * 153.83170 * 10 8 7 12 12 N 1.47443 * 107.23612 * 337.62814 * 11 10 8 13 13 C 1.46900 * 111.00227 * 236.74273 * 12 11 10 14 14 C 1.50699 * 109.47247 * 290.12346 * 13 12 11 15 15 O 1.21293 * 119.99699 * 359.97438 * 14 13 12 16 16 N 1.34778 * 120.00264 * 180.02562 * 14 13 12 17 17 C 1.37090 * 120.00118 * 180.02562 * 16 14 13 18 18 H 1.08009 * 120.00174 * 359.97438 * 17 16 14 19 19 C 1.38954 * 120.00130 * 179.97438 * 17 16 14 20 20 N 1.31410 * 119.99704 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99915 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47328 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.47111 * 120.00180 * 21 19 17 24 24 H 1.48505 * 109.46945 * 239.99746 * 21 19 17 25 25 C 1.47844 * 108.56494 * 359.01050 * 12 11 10 26 26 H 1.09000 * 109.47051 * 299.99839 * 1 2 3 27 27 H 1.09003 * 109.47341 * 60.00008 * 1 2 3 28 28 H 1.09009 * 109.47346 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.47110 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47431 * 299.99840 * 3 2 1 31 31 H 1.08995 * 109.47547 * 60.00040 * 3 2 1 32 32 H 0.97008 * 119.99898 * 0.02562 * 7 5 2 33 33 H 1.09002 * 110.70816 * 35.36018 * 10 8 7 34 34 H 1.09005 * 110.70106 * 272.30158 * 10 8 7 35 35 H 1.08997 * 109.89327 * 97.03090 * 11 10 8 36 36 H 1.09001 * 109.89155 * 218.05905 * 11 10 8 37 37 H 1.08998 * 109.46669 * 50.12444 * 13 12 11 38 38 H 1.08999 * 109.47032 * 170.11876 * 13 12 11 39 39 H 0.96997 * 119.99233 * 359.97438 * 16 14 13 40 40 H 0.96997 * 119.99797 * 180.02562 * 20 19 17 41 41 H 1.08999 * 110.37744 * 142.93014 * 25 12 11 42 42 H 1.09007 * 110.37325 * 265.15824 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0323 -0.7104 1.2305 6 8 2.5731 -0.0817 2.1154 7 7 1.8806 -2.0445 1.3476 8 6 2.3694 -2.7352 2.5435 9 1 3.3081 -2.3007 2.8871 10 6 1.3032 -2.7174 3.6703 11 6 1.6493 -3.9704 4.5018 12 7 2.4067 -4.8816 3.6244 13 6 1.7539 -6.1948 3.5398 14 6 1.8876 -6.9083 4.8604 15 8 2.4700 -6.3754 5.7813 16 7 1.3610 -8.1389 5.0179 17 6 1.4822 -8.7878 6.2194 18 1 2.0001 -8.3130 7.0397 19 6 0.9389 -10.0563 6.3819 20 7 0.3093 -10.6342 5.3837 21 14 1.1047 -10.9406 8.0189 22 1 1.8520 -10.0816 8.9722 23 1 -0.2459 -11.2273 8.5657 24 1 1.8393 -12.2160 7.8204 25 6 2.5221 -4.2602 2.2878 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1300 1.4424 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.4483 -2.5475 0.6396 33 1 0.2996 -2.7972 3.2526 34 1 1.3968 -1.8154 4.2752 35 1 2.2599 -3.6891 5.3598 36 1 0.7337 -4.4547 4.8414 37 1 0.6980 -6.0610 3.3043 38 1 2.2285 -6.7867 2.7572 39 1 0.8957 -8.5651 4.2812 40 1 -0.0703 -11.5195 5.4972 41 1 3.4977 -4.4757 1.8521 42 1 1.7275 -4.6180 1.6330 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692386015.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:10 Heat of formation + Delta-G solvation = -142.422389 kcal Electronic energy + Delta-G solvation = -24556.664874 eV Core-core repulsion = 20677.941880 eV Total energy + Delta-G solvation = -3878.722994 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 301.159 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.96575 -41.26269 -40.37883 -39.07841 -36.04766 -35.50719 -34.66836 -33.29355 -32.13182 -29.75981 -28.46215 -28.09859 -26.10958 -24.75141 -22.44717 -22.11067 -21.20754 -20.79367 -19.84798 -19.06482 -17.85323 -17.67139 -17.00029 -16.92881 -16.60097 -16.42512 -16.00534 -15.72061 -15.62760 -15.32368 -14.80377 -14.67045 -14.43387 -14.18542 -13.79895 -13.57334 -13.42623 -13.36541 -13.29830 -13.10457 -13.02982 -12.96844 -12.78505 -12.51863 -12.41835 -12.36285 -12.11804 -12.00736 -11.81066 -11.49737 -10.93109 -10.33929 -10.26505 -9.99647 -9.25909 -8.46279 -5.94360 1.27500 1.36369 1.41660 1.55562 1.76925 2.07079 2.29339 2.81341 3.20527 3.21671 3.30939 3.43264 3.48648 3.61241 3.72447 3.78489 3.99297 4.21740 4.25791 4.31098 4.42693 4.52143 4.59133 4.62310 4.63506 4.68471 4.80267 4.87686 4.94364 4.96812 5.08230 5.13254 5.15461 5.31112 5.41885 5.84038 5.97967 6.09067 6.29644 6.62074 6.96031 7.14474 7.57978 8.14472 8.71424 Molecular weight = 301.16amu Principal moments of inertia in cm(-1) A = 0.042932 B = 0.002423 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.044825 B =11554.312289 C =11802.155553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.106 3.894 3 C -0.159 4.159 4 F -0.200 7.200 5 C 0.497 3.503 6 O -0.558 6.558 7 N -0.697 5.697 8 C 0.143 3.857 9 H 0.085 0.915 10 C -0.139 4.139 11 C 0.061 3.939 12 N -0.526 5.526 13 C 0.055 3.945 14 C 0.440 3.560 15 O -0.617 6.617 16 N -0.575 5.575 17 C -0.330 4.330 18 H 0.076 0.924 19 C -0.013 4.013 20 N -0.920 5.920 21 Si 0.991 3.009 22 H -0.275 1.275 23 H -0.270 1.270 24 H -0.271 1.271 25 C 0.044 3.956 26 H 0.085 0.915 27 H 0.100 0.900 28 H 0.082 0.918 29 H 0.059 0.941 30 H 0.098 0.902 31 H 0.083 0.917 32 H 0.418 0.582 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.055 0.945 36 H 0.044 0.956 37 H 0.076 0.924 38 H 0.114 0.886 39 H 0.397 0.603 40 H 0.277 0.723 41 H 0.095 0.905 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.511 18.905 -16.582 25.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.084 3.916 3 C -0.217 4.217 4 F -0.181 7.181 5 C 0.282 3.718 6 O -0.436 6.436 7 N -0.349 5.349 8 C 0.037 3.963 9 H 0.103 0.897 10 C -0.179 4.179 11 C -0.067 4.067 12 N -0.251 5.251 13 C -0.076 4.076 14 C 0.227 3.773 15 O -0.503 6.503 16 N -0.213 5.213 17 C -0.460 4.460 18 H 0.094 0.906 19 C -0.213 4.213 20 N -0.562 5.562 21 Si 0.815 3.185 22 H -0.200 1.200 23 H -0.196 1.196 24 H -0.196 1.196 25 C -0.083 4.083 26 H 0.104 0.896 27 H 0.119 0.881 28 H 0.101 0.899 29 H 0.078 0.922 30 H 0.117 0.883 31 H 0.102 0.898 32 H 0.255 0.745 33 H 0.106 0.894 34 H 0.092 0.908 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.094 0.906 38 H 0.132 0.868 39 H 0.230 0.770 40 H 0.087 0.913 41 H 0.114 0.886 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.318 19.398 -15.175 24.737 hybrid contribution -0.910 -1.137 0.094 1.459 sum -3.228 18.262 -15.080 23.902 Atomic orbital electron populations 1.22429 0.89029 1.05368 1.05895 1.21278 0.98064 0.93242 0.78967 1.22211 1.02370 0.92000 1.05130 1.92917 1.90523 1.82813 1.51838 1.21368 0.78603 0.82826 0.88988 1.90740 1.43299 1.66535 1.43023 1.45773 1.60143 1.07327 1.21652 1.21973 0.97337 0.92109 0.84877 0.89692 1.23098 0.99672 0.97875 0.97212 1.22535 0.96082 0.91925 0.96150 1.63108 1.50211 1.01752 1.10068 1.21953 0.99272 0.91351 0.95072 1.20836 0.82782 0.82606 0.91058 1.90503 1.47367 1.67789 1.44657 1.41923 1.50527 1.15062 1.13821 1.19658 1.35198 0.99481 0.91640 0.90560 1.26001 0.95892 0.96980 1.02410 1.69668 1.37077 1.16674 1.32734 0.84900 0.78296 0.77892 0.77428 1.19991 1.19558 1.19602 1.23356 1.03711 0.91114 0.90154 0.89574 0.88085 0.89935 0.92187 0.88286 0.89790 0.74470 0.89426 0.90810 0.92610 0.93739 0.90646 0.86801 0.76954 0.91331 0.88630 0.90141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.37 8.91 71.98 0.64 -0.73 16 2 C 0.11 1.47 1.53 -11.54 -0.02 1.45 16 3 C -0.16 -2.05 8.28 71.98 0.60 -1.45 16 4 F -0.20 -3.13 16.74 44.97 0.75 -2.37 16 5 C 0.50 9.89 6.79 87.66 0.60 10.49 16 6 O -0.56 -15.54 15.72 -3.02 -0.05 -15.59 16 7 N -0.70 -11.74 5.21 -435.22 -2.27 -14.01 16 8 C 0.14 3.12 3.33 46.54 0.16 3.27 16 9 H 0.08 2.27 7.73 -2.39 -0.02 2.25 16 10 C -0.14 -3.28 6.62 31.77 0.21 -3.07 16 11 C 0.06 1.95 5.64 86.64 0.49 2.44 16 12 N -0.53 -16.62 4.85 -889.11 -4.31 -20.94 16 13 C 0.05 1.82 5.03 85.56 0.43 2.25 16 14 C 0.44 20.87 7.43 87.66 0.65 21.52 16 15 O -0.62 -34.58 15.12 -3.07 -0.05 -34.62 16 16 N -0.58 -29.37 5.29 -306.98 -1.62 -31.00 16 17 C -0.33 -18.80 9.68 84.04 0.81 -17.99 16 18 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 19 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 20 N -0.92 -49.40 13.05 21.66 0.28 -49.12 16 21 Si 0.99 43.12 29.55 68.60 2.03 45.15 16 22 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 23 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 24 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 25 C 0.04 0.95 6.33 86.94 0.55 1.50 16 26 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.08 0.54 8.14 -2.38 -0.02 0.52 16 29 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 30 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.08 1.10 7.99 -2.39 -0.02 1.08 16 32 H 0.42 4.70 8.50 -92.70 -0.79 3.91 16 33 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 35 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.04 1.52 7.32 -2.39 -0.02 1.50 16 37 H 0.08 2.15 7.96 -2.39 -0.02 2.13 16 38 H 0.11 3.24 8.07 -2.39 -0.02 3.22 16 39 H 0.40 19.03 7.90 -92.71 -0.73 18.30 16 40 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 41 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.08 1.29 7.68 -2.38 -0.02 1.27 16 Total: -1.00 -73.18 353.84 -0.13 -73.31 By element: Atomic # 1 Polarization: 30.22 SS G_CDS: -0.48 Total: 29.74 kcal Atomic # 6 Polarization: 13.87 SS G_CDS: 5.58 Total: 19.45 kcal Atomic # 7 Polarization: -107.14 SS G_CDS: -7.92 Total: -115.06 kcal Atomic # 8 Polarization: -50.12 SS G_CDS: -0.09 Total: -50.21 kcal Atomic # 9 Polarization: -3.13 SS G_CDS: 0.75 Total: -2.37 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -73.18 -0.13 -73.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692386015.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.111 kcal (2) G-P(sol) polarization free energy of solvation -73.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds