Wall clock time and date at job start Tue Mar 31 2020 03:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86806 * 120.00440 * 2 1 4 4 H 1.48498 * 109.47209 * 89.99105 * 3 2 1 5 5 H 1.48504 * 109.46570 * 329.99433 * 3 2 1 6 6 H 1.48495 * 109.47319 * 209.99681 * 3 2 1 7 7 C 1.38814 * 120.00175 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99742 * 15.17115 * 7 2 1 9 9 N 1.36932 * 120.00431 * 195.17932 * 7 2 1 10 10 C 1.47071 * 136.05774 * 7.44306 * 9 7 2 11 11 C 1.53748 * 87.88589 * 152.97163 * 10 9 7 12 12 N 1.46503 * 114.39573 * 272.67728 * 11 10 9 13 13 C 1.34778 * 119.99948 * 248.58600 * 12 11 10 14 14 O 1.21276 * 120.00261 * 0.02562 * 13 12 11 15 15 C 1.50704 * 119.99783 * 180.02562 * 13 12 11 16 16 C 1.53000 * 109.46871 * 180.02562 * 15 13 12 17 17 H 1.08998 * 110.01496 * 53.61516 * 16 15 13 18 18 C 1.53873 * 110.02617 * 174.99735 * 16 15 13 19 19 C 1.54174 * 108.70438 * 166.46757 * 18 16 15 20 20 S 1.82910 * 105.08547 * 332.09069 * 19 18 16 21 21 O 1.42103 * 109.35344 * 115.52123 * 20 19 18 22 22 O 1.42095 * 109.35490 * 248.59009 * 20 19 18 23 23 C 1.55054 * 110.02466 * 292.18650 * 16 15 13 24 24 C 1.47064 * 136.05908 * 187.82899 * 9 7 2 25 25 H 0.96991 * 120.00289 * 174.90671 * 1 2 3 26 26 H 1.09000 * 113.46667 * 267.70724 * 10 9 7 27 27 H 1.09001 * 113.46589 * 38.14337 * 10 9 7 28 28 H 1.09000 * 114.08516 * 139.78501 * 11 10 9 29 29 H 0.96992 * 119.99714 * 68.59117 * 12 11 10 30 30 H 1.09003 * 109.46606 * 299.99726 * 15 13 12 31 31 H 1.08998 * 109.47304 * 60.00081 * 15 13 12 32 32 H 1.08996 * 109.64900 * 286.32230 * 18 16 15 33 33 H 1.09001 * 109.64978 * 46.74735 * 18 16 15 34 34 H 1.08996 * 110.31567 * 90.99339 * 19 18 16 35 35 H 1.08998 * 110.31621 * 213.08912 * 19 18 16 36 36 H 1.08997 * 110.78818 * 316.54494 * 23 16 15 37 37 H 1.09005 * 110.78736 * 80.01106 * 23 16 15 38 38 H 1.08994 * 113.46675 * 321.85560 * 24 9 7 39 39 H 1.09003 * 113.46738 * 92.23717 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 1.4000 5 1 1.4478 2.6526 -0.7002 6 1 3.5479 1.4401 -0.6999 7 6 2.0103 -1.2021 0.0005 8 1 1.4985 -2.1213 -0.2438 9 7 3.3438 -1.2228 0.3110 10 6 4.3298 -0.2527 0.8108 11 6 5.1047 -1.4365 1.4126 12 7 4.6735 -1.8202 2.7591 13 6 5.4899 -1.6162 3.8119 14 8 6.5813 -1.1145 3.6447 15 6 5.0465 -2.0114 5.1969 16 6 6.1502 -1.6740 6.2014 17 1 6.4360 -0.6267 6.1038 18 6 5.6635 -1.9562 7.6336 19 6 6.8793 -1.9385 8.5814 20 16 8.3003 -2.4350 7.5423 21 8 9.2179 -1.3537 7.4516 22 8 8.7561 -3.7177 7.9496 23 6 7.3815 -2.5859 5.9635 24 6 4.4217 -2.2228 0.2851 25 1 -0.4850 -0.8366 -0.0746 26 1 4.8718 0.2629 0.0181 27 1 3.9267 0.4295 1.5592 28 1 6.1870 -1.3576 1.3105 29 1 3.8005 -2.2211 2.8929 30 1 4.1394 -1.4660 5.4575 31 1 4.8464 -3.0826 5.2226 32 1 4.9513 -1.1887 7.9366 33 1 5.1856 -2.9351 7.6721 34 1 7.0339 -0.9358 8.9800 35 1 6.7359 -2.6503 9.3943 36 1 7.0720 -3.6170 5.7931 37 1 7.9804 -2.2177 5.1305 38 1 4.0970 -3.2189 0.5855 39 1 4.9874 -2.2272 -0.6467 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030632613.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:14 Heat of formation + Delta-G solvation = -48.602181 kcal Electronic energy + Delta-G solvation = -22714.766896 eV Core-core repulsion = 19172.773671 eV Total energy + Delta-G solvation = -3541.993225 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 302.113 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -40.07180 -38.42912 -37.25780 -36.83672 -36.19125 -33.54380 -32.26118 -31.29796 -28.77889 -27.63008 -25.37804 -24.97525 -22.73168 -21.30229 -20.25403 -19.55789 -19.09603 -17.55105 -17.48206 -16.83563 -16.68760 -16.03353 -15.80306 -15.31140 -15.03061 -14.70651 -14.30120 -14.22441 -13.83280 -13.45781 -13.31156 -13.17758 -12.83494 -12.39200 -12.32006 -12.28616 -12.19270 -12.09455 -11.75043 -11.43507 -11.23989 -11.01726 -10.93883 -10.59675 -10.51458 -10.23729 -9.85040 -9.74095 -9.31723 -8.83213 -8.59458 -7.29136 -6.38965 -3.32596 -0.20725 2.27533 2.69758 3.19262 3.36383 3.36896 3.44232 3.57623 3.71286 4.01699 4.21381 4.25940 4.47615 4.51937 4.53754 4.67833 4.80808 4.98747 5.08111 5.15490 5.17701 5.27134 5.31021 5.35904 5.38132 5.67111 5.73646 5.82606 5.84188 6.13987 6.18094 6.29781 6.37854 6.90927 7.02136 7.73731 8.14755 8.35690 8.88049 9.41348 10.27476 11.10545 Molecular weight = 302.11amu Principal moments of inertia in cm(-1) A = 0.029814 B = 0.003094 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.931664 B = 9046.334577 C = 9208.170463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.021 4.021 3 Si 1.062 2.938 4 H -0.294 1.294 5 H -0.295 1.295 6 H -0.282 1.282 7 C -0.309 4.309 8 H 0.082 0.918 9 N -0.624 5.624 10 C 0.087 3.913 11 C 0.099 3.901 12 N -0.694 5.694 13 C 0.512 3.488 14 O -0.547 6.547 15 C -0.129 4.129 16 C -0.073 4.073 17 H 0.106 0.894 18 C -0.112 4.112 19 C -0.594 4.594 20 S 2.384 3.616 21 O -0.937 6.937 22 O -0.945 6.945 23 C -0.578 4.578 24 C 0.108 3.892 25 H 0.261 0.739 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.103 0.897 29 H 0.408 0.592 30 H 0.104 0.896 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.135 0.865 37 H 0.152 0.848 38 H 0.049 0.951 39 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.882 -6.135 16.239 21.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.221 4.221 3 Si 0.893 3.107 4 H -0.222 1.222 5 H -0.222 1.222 6 H -0.208 1.208 7 C -0.435 4.435 8 H 0.100 0.900 9 N -0.352 5.352 10 C -0.040 4.040 11 C -0.008 4.008 12 N -0.344 5.344 13 C 0.298 3.702 14 O -0.426 6.426 15 C -0.170 4.170 16 C -0.093 4.093 17 H 0.124 0.876 18 C -0.150 4.150 19 C -0.723 4.723 20 S 2.569 3.431 21 O -0.934 6.934 22 O -0.942 6.942 23 C -0.708 4.708 24 C -0.019 4.019 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.121 0.879 29 H 0.243 0.757 30 H 0.122 0.878 31 H 0.118 0.882 32 H 0.114 0.886 33 H 0.106 0.894 34 H 0.154 0.846 35 H 0.155 0.845 36 H 0.153 0.847 37 H 0.170 0.830 38 H 0.067 0.933 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 13.169 -4.294 16.351 21.430 hybrid contribution -1.238 -1.670 -0.478 2.134 sum 11.931 -5.964 15.873 20.733 Atomic orbital electron populations 1.70909 1.05454 1.29597 1.51244 1.25762 0.96455 1.00895 0.98956 0.83773 0.74549 0.75867 0.76466 1.22205 1.22249 1.20820 1.20135 0.80361 0.95921 1.47058 0.90048 1.46405 1.03515 1.07939 1.77378 1.23192 0.90489 0.94047 0.96233 1.22441 0.98304 0.98053 0.81981 1.45521 1.20081 1.62450 1.06300 1.20496 0.84852 0.78373 0.86465 1.90660 1.21769 1.44238 1.85903 1.21609 0.99547 1.04090 0.91743 1.21614 0.93191 1.01063 0.93471 0.87611 1.22003 0.96745 1.05103 0.91190 1.30492 1.16608 1.12838 1.12393 1.09177 0.78293 0.75519 0.80159 1.93628 1.59195 1.55002 1.85582 1.93601 1.79524 1.40181 1.80942 1.30745 1.10955 1.08345 1.20761 1.22743 0.89545 0.94698 0.94872 0.92829 0.92801 0.92737 0.87888 0.75714 0.87768 0.88164 0.88637 0.89448 0.84570 0.84503 0.84679 0.83004 0.93302 0.93371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.41 13.70 55.49 0.76 -27.65 16 2 C -0.02 -0.60 5.50 -17.43 -0.10 -0.70 16 3 Si 1.06 26.08 25.50 -169.99 -4.34 21.75 16 4 H -0.29 -6.98 6.97 56.52 0.39 -6.59 16 5 H -0.30 -7.38 7.11 56.52 0.40 -6.98 16 6 H -0.28 -6.47 5.66 56.52 0.32 -6.15 16 7 C -0.31 -8.41 11.03 -15.06 -0.17 -8.58 16 8 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 9 N -0.62 -14.27 3.62 -184.65 -0.67 -14.94 16 10 C 0.09 1.77 5.43 -8.38 -0.05 1.72 16 11 C 0.10 1.64 4.61 -67.68 -0.31 1.33 16 12 N -0.69 -9.96 5.40 -53.49 -0.29 -10.25 16 13 C 0.51 6.64 7.62 -10.98 -0.08 6.56 16 14 O -0.55 -8.69 14.03 5.56 0.08 -8.61 16 15 C -0.13 -1.05 5.18 -27.88 -0.14 -1.19 16 16 C -0.07 -0.54 2.21 -89.08 -0.20 -0.74 16 17 H 0.11 0.89 7.92 -51.93 -0.41 0.48 16 18 C -0.11 -0.53 5.75 -25.66 -0.15 -0.68 16 19 C -0.59 -2.93 7.26 37.77 0.27 -2.66 16 20 S 2.38 19.88 6.10 -107.50 -0.66 19.23 16 21 O -0.94 -11.75 18.15 -57.73 -1.05 -12.79 16 22 O -0.95 -10.99 18.15 -57.73 -1.05 -12.03 16 23 C -0.58 -4.52 6.11 38.24 0.23 -4.29 16 24 C 0.11 1.95 8.44 -8.52 -0.07 1.88 16 25 H 0.26 7.86 8.73 -40.82 -0.36 7.50 16 26 H 0.05 1.08 7.02 -51.93 -0.36 0.72 16 27 H 0.05 1.17 6.22 -51.93 -0.32 0.85 16 28 H 0.10 1.62 7.45 -51.93 -0.39 1.23 16 29 H 0.41 5.56 8.76 -40.82 -0.36 5.21 16 30 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.10 0.58 8.09 -51.93 -0.42 0.16 16 32 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.09 0.28 8.10 -51.93 -0.42 -0.14 16 34 H 0.14 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.14 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.13 0.80 8.06 -51.93 -0.42 0.38 16 37 H 0.15 1.47 6.92 -51.93 -0.36 1.11 16 38 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 327.72 15.07 4.94 4.94 Total: -1.00 -38.09 327.72 -8.69 -46.78 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -5.66 Total: 0.93 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: -0.76 Total: -7.36 kcal Atomic # 7 Polarization: -52.64 SS G_CDS: -0.20 Total: -52.84 kcal Atomic # 8 Polarization: -31.42 SS G_CDS: -2.02 Total: -33.43 kcal Atomic # 14 Polarization: 26.08 SS G_CDS: -4.34 Total: 21.75 kcal Atomic # 16 Polarization: 19.88 SS G_CDS: -0.66 Total: 19.23 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -38.09 -8.69 -46.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030632613.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.823 kcal (2) G-P(sol) polarization free energy of solvation -38.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds