Wall clock time and date at job start Tue Mar 31 2020 03:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 114.00265 * 2 1 4 4 C 1.52995 * 109.47316 * 179.97438 * 3 2 1 5 5 N 1.46903 * 109.46878 * 64.42451 * 4 3 2 6 6 C 1.46904 * 110.99794 * 199.83991 * 5 4 3 7 7 C 1.46902 * 111.00261 * 75.88872 * 5 4 3 8 8 C 1.52988 * 109.47313 * 189.99888 * 7 5 4 9 9 H 1.09002 * 109.47317 * 305.00314 * 8 7 5 10 10 O 1.42901 * 109.47240 * 64.99872 * 8 7 5 11 11 C 1.53004 * 109.47331 * 185.00189 * 8 7 5 12 12 N 1.46904 * 109.47045 * 180.02562 * 11 8 7 13 13 C 1.47842 * 110.99755 * 290.83691 * 12 11 8 14 14 C 1.54903 * 104.79531 * 213.64045 * 13 12 11 15 15 C 1.55140 * 101.65591 * 37.07058 * 14 13 12 16 16 O 1.42905 * 110.85246 * 82.80043 * 15 14 13 17 17 C 1.50696 * 110.70892 * 205.96210 * 15 14 13 18 18 H 1.07999 * 119.99799 * 113.59862 * 17 15 14 19 19 C 1.37875 * 120.00042 * 293.60062 * 17 15 14 20 20 N 1.31519 * 120.00185 * 359.97438 * 19 17 15 21 21 Si 1.86807 * 119.99841 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.46965 * 90.00366 * 21 19 17 23 23 H 1.48496 * 109.46950 * 210.00033 * 21 19 17 24 24 H 1.48493 * 109.46983 * 329.99993 * 21 19 17 25 25 C 1.47439 * 110.99834 * 169.99911 * 12 11 8 26 26 H 1.08995 * 109.46913 * 59.99982 * 1 2 3 27 27 H 1.08993 * 109.47391 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47063 * 300.00496 * 1 2 3 29 29 H 1.08999 * 109.47138 * 59.99636 * 3 2 1 30 30 H 1.09000 * 109.46742 * 300.00329 * 3 2 1 31 31 H 1.08998 * 109.47054 * 304.42573 * 4 3 2 32 32 H 1.09001 * 109.47099 * 184.42186 * 4 3 2 33 33 H 1.09000 * 109.47241 * 290.71375 * 6 5 4 34 34 H 1.09002 * 109.47052 * 50.71201 * 6 5 4 35 35 H 1.08998 * 109.47140 * 170.70985 * 6 5 4 36 36 H 1.09000 * 109.46737 * 69.99598 * 7 5 4 37 37 H 1.09002 * 109.46782 * 310.00461 * 7 5 4 38 38 H 0.96699 * 113.99733 * 59.99857 * 10 8 7 39 39 H 1.09001 * 109.46795 * 299.99804 * 11 8 7 40 40 H 1.08993 * 109.46895 * 59.99797 * 11 8 7 41 41 H 1.09001 * 110.37517 * 332.46810 * 13 12 11 42 42 H 1.08997 * 110.37402 * 94.80971 * 13 12 11 43 43 H 1.09000 * 110.99084 * 278.97518 * 14 13 12 44 44 H 1.09009 * 111.02546 * 155.17838 * 14 13 12 45 45 H 0.96695 * 114.00237 * 66.31400 * 16 15 14 46 46 H 0.96995 * 120.00011 * 180.02562 * 20 19 17 47 47 H 1.08996 * 109.89123 * 242.66151 * 25 12 11 48 48 H 1.09006 * 109.88727 * 3.84858 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9768 0.5497 -1.2484 6 6 5.3288 -0.0073 -1.1066 7 6 3.9120 1.4949 -2.3710 8 6 4.1353 0.7429 -3.6845 9 1 5.0750 0.1929 -3.6330 10 8 3.0590 -0.1725 -3.8983 11 6 4.1921 1.7426 -4.8414 12 7 4.4060 1.0203 -6.1026 13 6 5.7652 0.4413 -6.1576 14 6 6.1659 0.5138 -7.6521 15 6 5.5367 1.8657 -8.0801 16 8 6.3921 2.9570 -7.7344 17 6 5.2397 1.8714 -9.5575 18 1 4.2169 1.9071 -9.9025 19 6 6.2736 1.8308 -10.4686 20 7 7.5192 1.7877 -10.0485 21 14 5.9054 1.8370 -12.3000 22 1 5.8581 3.2378 -12.7906 23 1 6.9706 1.0955 -13.0216 24 1 4.5949 1.1827 -12.5436 25 6 4.2300 1.9158 -7.2606 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.6886 1.8464 0.8899 30 1 1.6886 1.8463 -0.8900 31 1 3.8514 0.5769 0.8485 32 1 3.9785 2.1774 0.0799 33 1 6.0494 0.8058 -1.0193 34 1 5.3734 -0.6298 -0.2130 35 1 5.5666 -0.6112 -1.9823 36 1 4.6844 2.2546 -2.2514 37 1 2.9323 1.9724 -2.3878 38 1 2.1902 0.2484 -3.9546 39 1 3.2524 2.2924 -4.8928 40 1 5.0131 2.4407 -4.6782 41 1 6.4534 1.0302 -5.5512 42 1 5.7504 -0.5945 -5.8185 43 1 5.7321 -0.3139 -8.2133 44 1 7.2498 0.5342 -7.7659 45 1 7.2273 2.9717 -8.2214 46 1 8.2465 1.7595 -10.6895 47 1 3.3956 1.5720 -7.8718 48 1 4.0463 2.9340 -6.9174 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594015805.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:58 Heat of formation + Delta-G solvation = -129.196568 kcal Electronic energy + Delta-G solvation = -26118.741905 eV Core-core repulsion = 22402.167163 eV Total energy + Delta-G solvation = -3716.574742 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 302.204 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.14538 -38.33115 -37.37600 -35.86076 -34.35833 -32.06142 -31.10216 -30.21458 -28.68259 -28.07475 -26.64964 -25.91389 -24.49056 -23.56970 -21.81616 -20.82394 -19.95784 -19.39432 -17.11680 -16.88243 -16.56955 -16.15448 -15.67665 -15.59417 -14.91272 -14.86789 -14.83547 -14.42872 -14.25117 -13.92808 -13.80259 -13.21645 -13.00422 -12.77422 -12.29644 -12.13498 -11.94892 -11.87209 -11.82796 -11.62750 -11.56573 -11.26857 -11.22953 -11.03937 -10.92629 -10.56957 -10.47024 -10.39429 -10.29397 -9.95828 -9.79365 -9.53555 -9.21625 -8.60084 -8.35362 -8.08466 -7.55968 -6.20242 -4.26999 3.23743 3.30771 3.34707 3.57843 3.72177 4.31445 4.49501 4.72689 4.80161 4.86879 5.00354 5.06249 5.07323 5.14706 5.18832 5.22350 5.26439 5.35064 5.44359 5.49445 5.51588 5.54607 5.59331 5.61872 5.75723 5.89617 5.98365 6.07001 6.16612 6.29667 6.34043 6.45353 6.58748 6.86130 6.91631 6.97200 7.09130 7.11020 7.44857 7.50305 7.70179 7.79933 7.85330 8.08666 8.16238 8.74308 9.40643 9.52687 10.87072 Molecular weight = 302.20amu Principal moments of inertia in cm(-1) A = 0.032151 B = 0.002788 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.692023 B =10042.417221 C =10413.125315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.371 6.371 3 C 0.068 3.932 4 C 0.054 3.946 5 N -0.521 5.521 6 C 0.023 3.977 7 C 0.021 3.979 8 C 0.121 3.879 9 H 0.094 0.906 10 O -0.532 6.532 11 C 0.021 3.979 12 N -0.517 5.517 13 C 0.042 3.958 14 C -0.131 4.131 15 C 0.236 3.764 16 O -0.594 6.594 17 C -0.530 4.530 18 H 0.062 0.938 19 C 0.068 3.932 20 N -0.900 5.900 21 Si 0.901 3.099 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.272 1.272 25 C 0.058 3.942 26 H 0.039 0.961 27 H 0.084 0.916 28 H 0.034 0.966 29 H 0.047 0.953 30 H 0.048 0.952 31 H 0.081 0.919 32 H 0.048 0.952 33 H 0.023 0.977 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.040 0.960 37 H 0.075 0.925 38 H 0.364 0.636 39 H 0.067 0.933 40 H 0.038 0.962 41 H 0.033 0.967 42 H 0.062 0.938 43 H 0.064 0.936 44 H 0.071 0.929 45 H 0.383 0.617 46 H 0.267 0.733 47 H 0.079 0.921 48 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.863 -0.272 19.268 20.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.290 6.290 3 C -0.009 4.009 4 C -0.075 4.075 5 N -0.245 5.245 6 C -0.125 4.125 7 C -0.108 4.108 8 C 0.061 3.939 9 H 0.112 0.888 10 O -0.335 6.335 11 C -0.109 4.109 12 N -0.240 5.240 13 C -0.085 4.085 14 C -0.169 4.169 15 C 0.195 3.805 16 O -0.404 6.404 17 C -0.568 4.568 18 H 0.080 0.920 19 C -0.133 4.133 20 N -0.541 5.541 21 Si 0.729 3.271 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.197 1.197 25 C -0.070 4.070 26 H 0.058 0.942 27 H 0.103 0.897 28 H 0.053 0.947 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.100 0.900 32 H 0.066 0.934 33 H 0.041 0.959 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.058 0.942 37 H 0.093 0.907 38 H 0.210 0.790 39 H 0.086 0.914 40 H 0.057 0.943 41 H 0.051 0.949 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.090 0.910 45 H 0.235 0.765 46 H 0.077 0.923 47 H 0.097 0.903 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -8.264 -1.534 19.505 21.239 hybrid contribution 0.915 1.995 -1.166 2.486 sum -7.349 0.461 18.340 19.763 Atomic orbital electron populations 1.22713 0.81727 1.02649 0.99464 1.88017 1.18818 1.26958 1.95183 1.22523 0.93533 0.85329 0.99553 1.22166 0.93898 0.98138 0.93258 1.61835 1.25016 1.34699 1.02964 1.22449 0.88004 0.99041 1.02972 1.22966 1.01430 0.93936 0.92473 1.21818 0.91903 0.90438 0.89762 0.88774 1.86627 1.16748 1.35148 1.94951 1.22935 1.00864 0.95315 0.91788 1.63612 1.27574 1.31991 1.00852 1.23071 0.88156 0.98177 0.99112 1.23157 1.01317 1.00652 0.91815 1.19719 0.85591 0.83030 0.92129 1.86061 1.34842 1.50993 1.68491 1.21617 0.93458 1.50876 0.90897 0.91959 1.25017 0.94953 0.93766 0.99562 1.69590 0.98564 1.51000 1.34924 0.86447 0.78180 0.78124 0.84387 1.20569 1.21111 1.19721 1.22854 0.99156 0.93846 0.91115 0.94193 0.89736 0.94724 0.93448 0.93393 0.90039 0.93370 0.95883 0.91443 0.90726 0.94226 0.90671 0.79004 0.91436 0.94345 0.94913 0.91954 0.91755 0.91008 0.76499 0.92315 0.90271 0.93830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.37 16 2 O -0.37 -4.18 10.64 -35.23 -0.37 -4.55 16 3 C 0.07 0.61 6.13 37.16 0.23 0.84 16 4 C 0.05 0.50 5.39 -3.83 -0.02 0.48 16 5 N -0.52 -5.98 4.58 -242.92 -1.11 -7.09 16 6 C 0.02 0.25 9.24 60.07 0.55 0.80 16 7 C 0.02 0.24 4.42 -3.83 -0.02 0.22 16 8 C 0.12 1.70 2.91 -26.74 -0.08 1.62 16 9 H 0.09 1.44 5.80 -51.93 -0.30 1.14 16 10 O -0.53 -8.13 13.15 -35.23 -0.46 -8.59 16 11 C 0.02 0.33 4.23 -3.82 -0.02 0.32 16 12 N -0.52 -10.12 5.03 -231.26 -1.16 -11.29 16 13 C 0.04 0.86 5.78 -2.30 -0.01 0.85 16 14 C -0.13 -3.09 5.67 -24.59 -0.14 -3.23 16 15 C 0.24 5.92 0.86 -89.95 -0.08 5.84 16 16 O -0.59 -15.59 13.09 -35.23 -0.46 -16.05 16 17 C -0.53 -14.34 8.21 -34.44 -0.28 -14.62 16 18 H 0.06 1.67 7.53 -52.49 -0.40 1.28 16 19 C 0.07 1.83 5.28 -17.82 -0.09 1.73 16 20 N -0.90 -24.22 10.69 55.43 0.59 -23.63 16 21 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 25 C 0.06 1.27 6.21 -2.84 -0.02 1.25 16 26 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.03 0.23 8.14 -51.93 -0.42 -0.20 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.43 6.68 -51.93 -0.35 0.08 16 31 H 0.08 0.73 7.74 -51.93 -0.40 0.33 16 32 H 0.05 0.39 8.00 -51.93 -0.42 -0.03 16 33 H 0.02 0.23 8.07 -51.93 -0.42 -0.19 16 34 H 0.07 0.65 7.85 -51.93 -0.41 0.24 16 35 H 0.07 0.88 6.62 -51.93 -0.34 0.54 16 36 H 0.04 0.44 8.07 -51.93 -0.42 0.02 16 37 H 0.07 0.79 6.58 -51.93 -0.34 0.44 16 38 H 0.36 4.51 9.05 45.56 0.41 4.92 16 39 H 0.07 0.99 8.03 -51.93 -0.42 0.57 16 40 H 0.04 0.65 7.85 -51.93 -0.41 0.24 16 41 H 0.03 0.66 7.62 -51.93 -0.40 0.26 16 42 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.06 1.57 8.04 -51.93 -0.42 1.16 16 44 H 0.07 1.78 7.76 -51.92 -0.40 1.38 16 45 H 0.38 10.29 6.98 45.56 0.32 10.61 16 46 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 47 H 0.08 1.76 7.63 -51.93 -0.40 1.36 16 48 H 0.04 0.95 7.47 -51.93 -0.39 0.56 16 LS Contribution 375.76 15.07 5.66 5.66 Total: -1.00 -29.95 375.76 -8.34 -38.29 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: -7.14 Total: 13.97 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: 1.14 Total: -2.52 kcal Atomic # 7 Polarization: -40.32 SS G_CDS: -1.68 Total: -42.01 kcal Atomic # 8 Polarization: -27.89 SS G_CDS: -1.30 Total: -29.19 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -29.95 -8.34 -38.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594015805.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.911 kcal (2) G-P(sol) polarization free energy of solvation -29.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds