Wall clock time and date at job start Tue Mar 31 2020 03:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 114.00265 * 2 1 4 4 C 1.52995 * 109.47316 * 179.97438 * 3 2 1 5 5 N 1.46903 * 109.46878 * 64.42451 * 4 3 2 6 6 C 1.46904 * 110.99794 * 199.83991 * 5 4 3 7 7 C 1.46902 * 111.00261 * 75.88872 * 5 4 3 8 8 C 1.52988 * 109.47313 * 189.99888 * 7 5 4 9 9 H 1.09002 * 109.47317 * 305.00314 * 8 7 5 10 10 O 1.42901 * 109.47240 * 64.99872 * 8 7 5 11 11 C 1.53004 * 109.47331 * 185.00189 * 8 7 5 12 12 N 1.46904 * 109.47045 * 180.02562 * 11 8 7 13 13 C 1.47842 * 110.99755 * 290.83691 * 12 11 8 14 14 C 1.54903 * 104.79531 * 213.64045 * 13 12 11 15 15 C 1.55140 * 101.65591 * 37.07058 * 14 13 12 16 16 O 1.42905 * 110.85246 * 82.80043 * 15 14 13 17 17 C 1.50696 * 110.70892 * 205.96210 * 15 14 13 18 18 H 1.07999 * 119.99799 * 113.59862 * 17 15 14 19 19 C 1.37875 * 120.00042 * 293.60062 * 17 15 14 20 20 N 1.31519 * 120.00185 * 359.97438 * 19 17 15 21 21 Si 1.86807 * 119.99841 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.46965 * 90.00366 * 21 19 17 23 23 H 1.48496 * 109.46950 * 210.00033 * 21 19 17 24 24 H 1.48493 * 109.46983 * 329.99993 * 21 19 17 25 25 C 1.47439 * 110.99834 * 169.99911 * 12 11 8 26 26 H 1.08995 * 109.46913 * 59.99982 * 1 2 3 27 27 H 1.08993 * 109.47391 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47063 * 300.00496 * 1 2 3 29 29 H 1.08999 * 109.47138 * 59.99636 * 3 2 1 30 30 H 1.09000 * 109.46742 * 300.00329 * 3 2 1 31 31 H 1.08998 * 109.47054 * 304.42573 * 4 3 2 32 32 H 1.09001 * 109.47099 * 184.42186 * 4 3 2 33 33 H 1.09000 * 109.47241 * 290.71375 * 6 5 4 34 34 H 1.09002 * 109.47052 * 50.71201 * 6 5 4 35 35 H 1.08998 * 109.47140 * 170.70985 * 6 5 4 36 36 H 1.09000 * 109.46737 * 69.99598 * 7 5 4 37 37 H 1.09002 * 109.46782 * 310.00461 * 7 5 4 38 38 H 0.96699 * 113.99733 * 59.99857 * 10 8 7 39 39 H 1.09001 * 109.46795 * 299.99804 * 11 8 7 40 40 H 1.08993 * 109.46895 * 59.99797 * 11 8 7 41 41 H 1.09001 * 110.37517 * 332.46810 * 13 12 11 42 42 H 1.08997 * 110.37402 * 94.80971 * 13 12 11 43 43 H 1.09000 * 110.99084 * 278.97518 * 14 13 12 44 44 H 1.09009 * 111.02546 * 155.17838 * 14 13 12 45 45 H 0.96695 * 114.00237 * 66.31400 * 16 15 14 46 46 H 0.96995 * 120.00011 * 180.02562 * 20 19 17 47 47 H 1.08996 * 109.89123 * 242.66151 * 25 12 11 48 48 H 1.09006 * 109.88727 * 3.84858 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9768 0.5497 -1.2484 6 6 5.3288 -0.0073 -1.1066 7 6 3.9120 1.4949 -2.3710 8 6 4.1353 0.7429 -3.6845 9 1 5.0750 0.1929 -3.6330 10 8 3.0590 -0.1725 -3.8983 11 6 4.1921 1.7426 -4.8414 12 7 4.4060 1.0203 -6.1026 13 6 5.7652 0.4413 -6.1576 14 6 6.1659 0.5138 -7.6521 15 6 5.5367 1.8657 -8.0801 16 8 6.3921 2.9570 -7.7344 17 6 5.2397 1.8714 -9.5575 18 1 4.2169 1.9071 -9.9025 19 6 6.2736 1.8308 -10.4686 20 7 7.5192 1.7877 -10.0485 21 14 5.9054 1.8370 -12.3000 22 1 5.8581 3.2378 -12.7906 23 1 6.9706 1.0955 -13.0216 24 1 4.5949 1.1827 -12.5436 25 6 4.2300 1.9158 -7.2606 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.6886 1.8464 0.8899 30 1 1.6886 1.8463 -0.8900 31 1 3.8514 0.5769 0.8485 32 1 3.9785 2.1774 0.0799 33 1 6.0494 0.8058 -1.0193 34 1 5.3734 -0.6298 -0.2130 35 1 5.5666 -0.6112 -1.9823 36 1 4.6844 2.2546 -2.2514 37 1 2.9323 1.9724 -2.3878 38 1 2.1902 0.2484 -3.9546 39 1 3.2524 2.2924 -4.8928 40 1 5.0131 2.4407 -4.6782 41 1 6.4534 1.0302 -5.5512 42 1 5.7504 -0.5945 -5.8185 43 1 5.7321 -0.3139 -8.2133 44 1 7.2498 0.5342 -7.7659 45 1 7.2273 2.9717 -8.2214 46 1 8.2465 1.7595 -10.6895 47 1 3.3956 1.5720 -7.8718 48 1 4.0463 2.9340 -6.9174 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594015805.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:58 Heat of formation + Delta-G solvation = -155.691273 kcal Electronic energy + Delta-G solvation = -26119.890802 eV Core-core repulsion = 22402.167163 eV Total energy + Delta-G solvation = -3717.723639 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 302.204 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.46442 -39.50041 -38.39592 -36.98703 -36.04462 -34.12925 -32.42486 -31.18963 -30.04353 -29.80431 -27.51351 -27.08381 -25.94868 -24.75812 -22.99117 -21.77693 -21.54418 -21.21101 -19.14503 -17.82375 -17.40734 -17.15824 -16.94010 -16.70916 -16.41431 -16.40601 -16.09608 -15.72769 -15.41316 -15.20329 -15.01101 -14.72270 -14.25246 -13.82654 -13.67933 -13.48808 -13.42578 -13.19871 -13.00982 -12.88994 -12.71316 -12.63246 -12.48953 -12.39597 -12.35983 -12.29147 -12.09735 -11.88276 -11.83919 -11.49226 -11.20546 -10.71210 -10.59797 -10.46452 -10.10300 -9.19963 -9.14326 -8.22820 -6.37497 1.40378 1.42216 1.52155 2.38182 2.73415 3.01118 3.02780 3.20010 3.70052 3.79179 3.90929 4.07187 4.12112 4.14155 4.26279 4.33716 4.37281 4.41707 4.45028 4.47845 4.52954 4.59232 4.61638 4.63701 4.67114 4.71712 4.73731 4.78087 4.84808 4.92655 4.94588 5.03429 5.10717 5.17876 5.27493 5.47774 5.52805 5.79881 5.95474 6.05674 6.11849 6.19151 6.27522 6.43731 6.66849 7.06753 7.33050 7.42338 8.82659 Molecular weight = 302.20amu Principal moments of inertia in cm(-1) A = 0.032151 B = 0.002788 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.692023 B =10042.417221 C =10413.125315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.402 6.402 3 C 0.066 3.934 4 C 0.053 3.947 5 N -0.538 5.538 6 C 0.024 3.976 7 C 0.031 3.969 8 C 0.132 3.868 9 H 0.080 0.920 10 O -0.550 6.550 11 C 0.022 3.978 12 N -0.517 5.517 13 C 0.055 3.945 14 C -0.125 4.125 15 C 0.220 3.780 16 O -0.599 6.599 17 C -0.557 4.557 18 H 0.056 0.944 19 C 0.027 3.973 20 N -0.916 5.916 21 Si 0.962 3.038 22 H -0.276 1.276 23 H -0.281 1.281 24 H -0.270 1.270 25 C 0.065 3.935 26 H 0.043 0.957 27 H 0.087 0.913 28 H 0.050 0.950 29 H 0.067 0.933 30 H 0.049 0.951 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.030 0.970 34 H 0.075 0.925 35 H 0.058 0.942 36 H 0.045 0.955 37 H 0.088 0.912 38 H 0.377 0.623 39 H 0.085 0.915 40 H 0.032 0.968 41 H 0.035 0.965 42 H 0.074 0.926 43 H 0.049 0.951 44 H 0.053 0.947 45 H 0.377 0.623 46 H 0.269 0.731 47 H 0.075 0.925 48 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.829 0.158 20.288 22.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.321 6.321 3 C -0.011 4.011 4 C -0.075 4.075 5 N -0.262 5.262 6 C -0.124 4.124 7 C -0.098 4.098 8 C 0.071 3.929 9 H 0.098 0.902 10 O -0.355 6.355 11 C -0.107 4.107 12 N -0.241 5.241 13 C -0.073 4.073 14 C -0.164 4.164 15 C 0.180 3.820 16 O -0.408 6.408 17 C -0.595 4.595 18 H 0.075 0.925 19 C -0.173 4.173 20 N -0.557 5.557 21 Si 0.787 3.213 22 H -0.202 1.202 23 H -0.206 1.206 24 H -0.195 1.195 25 C -0.062 4.062 26 H 0.062 0.938 27 H 0.105 0.895 28 H 0.068 0.932 29 H 0.085 0.915 30 H 0.067 0.933 31 H 0.101 0.899 32 H 0.082 0.918 33 H 0.049 0.951 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.106 0.894 38 H 0.224 0.776 39 H 0.103 0.897 40 H 0.051 0.949 41 H 0.053 0.947 42 H 0.093 0.907 43 H 0.068 0.932 44 H 0.072 0.928 45 H 0.228 0.772 46 H 0.079 0.921 47 H 0.093 0.907 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -9.247 -1.100 20.548 22.560 hybrid contribution 1.202 1.856 -1.452 2.645 sum -8.045 0.755 19.096 20.736 Atomic orbital electron populations 1.22829 0.80474 1.03196 1.00381 1.87968 1.20382 1.28345 1.95407 1.22627 0.93192 0.84770 1.00529 1.22239 0.94263 0.98798 0.92168 1.61802 1.25339 1.35224 1.03876 1.22423 0.88100 0.99237 1.02610 1.22804 1.02327 0.93565 0.91127 1.21660 0.91189 0.89714 0.90305 0.90212 1.86594 1.17709 1.36086 1.95072 1.23037 1.01410 0.95638 0.90632 1.63621 1.26792 1.31975 1.01674 1.22935 0.88618 0.99072 0.96628 1.22976 0.99878 0.99498 0.94036 1.19959 0.86741 0.83183 0.92103 1.86051 1.34673 1.51734 1.68377 1.21892 0.93428 1.51803 0.92368 0.92539 1.25725 0.94843 0.93307 1.03440 1.69673 0.99067 1.50823 1.36092 0.85498 0.78018 0.78144 0.79604 1.20166 1.20614 1.19502 1.22704 0.97401 0.94416 0.91705 0.93842 0.89496 0.93183 0.91482 0.93306 0.89859 0.91829 0.95122 0.90583 0.92339 0.93705 0.89363 0.77584 0.89708 0.94946 0.94676 0.90749 0.93224 0.92835 0.77214 0.92111 0.90656 0.93635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 113.37 1.25 1.65 16 2 O -0.40 -8.37 10.64 -148.98 -1.59 -9.95 16 3 C 0.07 1.04 6.13 71.98 0.44 1.48 16 4 C 0.05 0.86 5.39 86.30 0.47 1.33 16 5 N -0.54 -11.36 4.58 -922.46 -4.22 -15.58 16 6 C 0.02 0.49 9.24 127.69 1.18 1.67 16 7 C 0.03 0.63 4.42 86.30 0.38 1.02 16 8 C 0.13 3.49 2.91 30.59 0.09 3.58 16 9 H 0.08 2.37 5.80 -2.39 -0.01 2.36 16 10 O -0.55 -15.96 13.15 -148.98 -1.96 -17.92 16 11 C 0.02 0.67 4.23 86.30 0.36 1.04 16 12 N -0.52 -19.78 5.03 -885.57 -4.45 -24.24 16 13 C 0.06 2.22 5.78 86.77 0.50 2.72 16 14 C -0.12 -5.99 5.67 31.98 0.18 -5.81 16 15 C 0.22 11.15 0.86 -10.36 -0.01 11.14 16 16 O -0.60 -31.74 13.09 -148.98 -1.95 -33.69 16 17 C -0.56 -30.38 8.21 25.60 0.21 -30.17 16 18 H 0.06 3.06 7.53 -2.91 -0.02 3.04 16 19 C 0.03 1.43 5.28 84.65 0.45 1.87 16 20 N -0.92 -49.65 10.69 21.45 0.23 -49.42 16 21 Si 0.96 42.65 29.54 68.60 2.03 44.68 16 22 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 23 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 24 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 25 C 0.07 2.87 6.21 86.65 0.54 3.41 16 26 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.05 0.75 6.68 -2.39 -0.02 0.73 16 31 H 0.08 1.32 7.74 -2.39 -0.02 1.31 16 32 H 0.06 0.85 8.00 -2.39 -0.02 0.83 16 33 H 0.03 0.56 8.07 -2.39 -0.02 0.54 16 34 H 0.08 1.36 7.85 -2.39 -0.02 1.34 16 35 H 0.06 1.35 6.62 -2.39 -0.02 1.33 16 36 H 0.04 0.89 8.07 -2.39 -0.02 0.88 16 37 H 0.09 1.60 6.58 -2.39 -0.02 1.59 16 38 H 0.38 8.62 9.05 -74.06 -0.67 7.95 16 39 H 0.08 2.29 8.03 -2.39 -0.02 2.27 16 40 H 0.03 1.05 7.85 -2.39 -0.02 1.03 16 41 H 0.03 1.39 7.62 -2.39 -0.02 1.37 16 42 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 43 H 0.05 2.47 8.04 -2.39 -0.02 2.45 16 44 H 0.05 2.71 7.76 -2.38 -0.02 2.70 16 45 H 0.38 20.64 6.98 -74.06 -0.52 20.12 16 46 H 0.27 13.88 8.31 -92.71 -0.77 13.11 16 47 H 0.08 3.33 7.63 -2.39 -0.02 3.31 16 48 H 0.05 1.94 7.47 -2.38 -0.02 1.93 16 Total: -1.00 -62.98 375.76 -6.12 -69.10 By element: Atomic # 1 Polarization: 42.35 SS G_CDS: -0.24 Total: 42.11 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: 6.04 Total: -5.08 kcal Atomic # 7 Polarization: -80.79 SS G_CDS: -8.45 Total: -89.24 kcal Atomic # 8 Polarization: -56.07 SS G_CDS: -5.49 Total: -61.57 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -62.98 -6.12 -69.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594015805.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.586 kcal (2) G-P(sol) polarization free energy of solvation -62.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds