Wall clock time and date at job start Tue Mar 31 2020 03:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86808 * 119.99565 * 2 1 4 4 H 1.48499 * 109.46928 * 266.78852 * 3 2 1 5 5 H 1.48495 * 109.47170 * 26.79154 * 3 2 1 6 6 H 1.48504 * 109.46684 * 146.79148 * 3 2 1 7 7 C 1.37877 * 120.00259 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99745 * 353.99913 * 7 2 1 9 9 C 1.50696 * 119.99627 * 174.00446 * 7 2 1 10 10 O 1.42897 * 110.64393 * 325.33980 * 9 7 2 11 11 C 1.55160 * 110.71738 * 202.19988 * 9 7 2 12 12 C 1.54908 * 101.58084 * 205.95818 * 11 9 7 13 13 N 1.47419 * 104.83608 * 37.01081 * 12 11 9 14 14 C 1.34773 * 125.65181 * 155.83717 * 13 12 11 15 15 O 1.21280 * 120.00035 * 180.02562 * 14 13 12 16 16 C 1.50698 * 120.00087 * 0.02562 * 14 13 12 17 17 Br 1.96603 * 115.54830 * 29.41786 * 16 14 13 18 18 C 1.53000 * 117.49903 * 243.74655 * 16 14 13 19 19 C 1.53006 * 117.49754 * 175.08698 * 16 14 13 20 20 C 1.47026 * 108.70244 * 335.86885 * 13 12 11 21 21 H 0.97001 * 120.00437 * 0.02562 * 1 2 3 22 22 H 0.96707 * 114.00035 * 293.09451 * 10 9 7 23 23 H 1.09001 * 111.00555 * 324.02935 * 11 9 7 24 24 H 1.09000 * 111.00660 * 87.84175 * 11 9 7 25 25 H 1.09013 * 110.36647 * 155.84586 * 12 11 9 26 26 H 1.08996 * 110.36849 * 278.16363 * 12 11 9 27 27 H 1.08998 * 117.50035 * 0.02562 * 18 16 14 28 28 H 1.09000 * 117.49918 * 145.01748 * 18 16 14 29 29 H 1.09003 * 117.49759 * 214.97848 * 19 16 14 30 30 H 1.08995 * 117.49789 * 0.02562 * 19 16 14 31 31 H 1.08994 * 109.88453 * 241.64722 * 20 13 12 32 32 H 1.09001 * 109.88338 * 120.47411 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.5644 2.0073 -1.3979 5 1 1.4141 2.6714 0.6311 6 1 3.5110 1.4608 0.7668 7 6 2.0045 -1.1940 0.0005 8 1 1.4690 -2.1267 0.0987 9 6 3.5053 -1.1975 -0.1358 10 8 3.9355 -0.1403 -0.9956 11 6 4.0057 -2.5695 -0.6600 12 6 5.4486 -2.6097 -0.0978 13 7 5.3541 -1.9765 1.2301 14 6 6.2004 -2.1796 2.2592 15 8 6.0250 -1.6026 3.3114 16 6 7.3646 -3.1235 2.1024 17 35 8.0855 -3.2854 0.2804 18 6 7.3837 -4.3742 2.9834 19 6 8.3540 -3.2242 3.2651 20 6 4.1833 -1.0874 1.2462 21 1 -0.4851 0.8400 -0.0004 22 1 3.6652 -0.2486 -1.9178 23 1 3.4059 -3.3847 -0.2554 24 1 4.0095 -2.5936 -1.7497 25 1 5.7902 -3.6406 -0.0031 26 1 6.1223 -2.0436 -0.7410 27 1 6.5540 -4.5145 3.6762 28 1 7.7962 -5.2867 2.5531 29 1 9.4045 -3.3807 3.0200 30 1 8.1625 -2.6081 4.1436 31 1 4.5006 -0.0597 1.4226 32 1 3.4894 -1.4023 2.0256 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824025310.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:43:26 Heat of formation + Delta-G solvation = -37.036969 kcal Electronic energy + Delta-G solvation = -17920.719105 eV Core-core repulsion = 14929.204236 eV Total energy + Delta-G solvation = -2991.514869 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 303.026 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.01060 -38.09534 -36.20775 -34.84627 -32.39278 -30.57254 -30.14678 -28.53846 -25.82686 -23.59042 -22.81079 -22.14940 -19.78573 -18.81738 -17.45564 -17.17294 -15.82374 -15.45641 -15.18982 -14.98200 -14.53623 -13.80540 -13.21496 -13.04204 -12.64275 -12.29858 -12.15547 -12.04353 -11.82875 -11.75842 -11.39278 -11.09777 -10.91610 -10.62182 -10.45499 -10.28066 -10.07305 -9.70953 -9.27084 -9.21470 -8.66680 -8.52367 -8.15923 -6.21625 -4.34586 1.20797 2.52910 3.13984 3.45630 3.52809 3.55848 3.69006 4.26746 4.43926 4.48098 4.51201 5.00461 5.13784 5.23455 5.24863 5.29631 5.56611 5.64284 5.78627 5.81267 6.02739 6.11923 6.48611 6.57820 6.60872 6.70529 6.98869 7.44682 7.85278 8.11661 8.31998 8.61215 8.80282 9.40040 10.87005 Molecular weight = 303.03amu Principal moments of inertia in cm(-1) A = 0.029251 B = 0.005579 C = 0.005220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.009395 B = 5017.780303 C = 5362.746352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.077 3.923 3 Si 0.942 3.058 4 H -0.289 1.289 5 H -0.322 1.322 6 H -0.268 1.268 7 C -0.552 4.552 8 H 0.082 0.918 9 C 0.220 3.780 10 O -0.563 6.563 11 C -0.150 4.150 12 C 0.091 3.909 13 N -0.598 5.598 14 C 0.562 3.438 15 O -0.537 6.537 16 C -0.136 4.136 17 Br -0.090 7.090 18 C -0.130 4.130 19 C -0.123 4.123 20 C 0.115 3.885 21 H 0.267 0.733 22 H 0.372 0.628 23 H 0.078 0.922 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.114 0.886 28 H 0.115 0.885 29 H 0.113 0.887 30 H 0.121 0.879 31 H 0.068 0.932 32 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.434 -9.599 0.216 19.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.129 4.129 3 Si 0.776 3.224 4 H -0.216 1.216 5 H -0.253 1.253 6 H -0.194 1.194 7 C -0.590 4.590 8 H 0.100 0.900 9 C 0.179 3.821 10 O -0.371 6.371 11 C -0.188 4.188 12 C -0.032 4.032 13 N -0.329 5.329 14 C 0.347 3.653 15 O -0.416 6.416 16 C -0.216 4.216 17 Br -0.009 7.009 18 C -0.168 4.168 19 C -0.162 4.162 20 C -0.007 4.007 21 H 0.077 0.923 22 H 0.220 0.780 23 H 0.097 0.903 24 H 0.095 0.905 25 H 0.092 0.908 26 H 0.092 0.908 27 H 0.132 0.868 28 H 0.133 0.867 29 H 0.131 0.869 30 H 0.139 0.861 31 H 0.086 0.914 32 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 17.698 -9.042 0.739 19.888 hybrid contribution -0.070 0.654 -0.362 0.751 sum 17.629 -8.388 0.376 19.526 Atomic orbital electron populations 1.69954 1.06812 1.27874 1.47401 1.25134 0.94878 1.00480 0.92406 0.85831 0.78142 0.80278 0.78124 1.21640 1.25325 1.19409 1.21176 0.88195 0.95365 1.54228 0.90020 1.20065 0.93558 0.82694 0.85749 1.86141 1.80008 1.48325 1.22598 1.23455 0.93951 1.00851 1.00588 1.22971 0.98910 0.97645 0.83647 1.48533 1.27538 1.44454 1.12386 1.18499 0.81539 0.81798 0.83428 1.90712 1.74004 1.49647 1.27245 1.25015 1.02196 1.05987 0.88422 1.97308 1.85360 1.98268 1.19916 1.23353 1.02709 0.91453 0.99330 1.23339 0.95818 1.00530 0.96494 1.22781 0.84801 0.93333 0.99741 0.92342 0.77966 0.90345 0.90457 0.90770 0.90764 0.86784 0.86682 0.86858 0.86108 0.91350 0.89805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.14 13.96 55.43 0.77 -25.37 16 2 C 0.08 2.12 5.46 -17.82 -0.10 2.03 16 3 Si 0.94 23.57 24.94 -169.99 -4.24 19.33 16 4 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.32 -8.28 7.11 56.52 0.40 -7.87 16 6 H -0.27 -6.78 5.26 56.52 0.30 -6.48 16 7 C -0.55 -14.51 8.72 -34.44 -0.30 -14.81 16 8 H 0.08 2.32 7.98 -52.49 -0.42 1.90 16 9 C 0.22 4.81 0.68 -89.93 -0.06 4.75 16 10 O -0.56 -12.01 8.68 -35.23 -0.31 -12.31 16 11 C -0.15 -2.67 6.21 -24.58 -0.15 -2.83 16 12 C 0.09 1.49 4.93 -2.53 -0.01 1.47 16 13 N -0.60 -11.42 3.33 -170.52 -0.57 -11.99 16 14 C 0.56 10.26 7.52 -10.99 -0.08 10.18 16 15 O -0.54 -11.40 16.60 5.56 0.09 -11.30 16 16 C -0.14 -1.83 2.73 -91.77 -0.25 -2.08 16 17 Br -0.09 -1.10 28.87 -68.01 -1.96 -3.07 16 18 C -0.13 -1.33 10.06 -26.69 -0.27 -1.60 16 19 C -0.12 -1.31 9.87 -26.69 -0.26 -1.57 16 20 C 0.11 2.56 5.72 -3.06 -0.02 2.54 16 21 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 22 H 0.37 6.73 9.06 45.56 0.41 7.14 16 23 H 0.08 1.42 7.99 -51.93 -0.41 1.01 16 24 H 0.08 1.22 8.12 -51.93 -0.42 0.80 16 25 H 0.07 1.06 6.14 -51.92 -0.32 0.74 16 26 H 0.07 1.19 7.17 -51.93 -0.37 0.81 16 27 H 0.11 1.20 8.14 -51.93 -0.42 0.77 16 28 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.11 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.12 1.38 7.68 -51.93 -0.40 0.98 16 31 H 0.07 1.66 6.45 -51.93 -0.33 1.32 16 32 H 0.08 1.98 7.82 -51.93 -0.41 1.57 16 LS Contribution 278.89 15.07 4.20 4.20 Total: -1.00 -31.50 278.89 -6.70 -38.19 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -3.18 Total: 4.22 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: -1.51 Total: -1.91 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: 0.21 Total: -37.35 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: -0.21 Total: -23.62 kcal Atomic # 14 Polarization: 23.57 SS G_CDS: -4.24 Total: 19.33 kcal Atomic # 35 Polarization: -1.10 SS G_CDS: -1.96 Total: -3.07 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -31.50 -6.70 -38.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824025310.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.157 kcal (2) G-P(sol) polarization free energy of solvation -31.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds