Wall clock time and date at job start Tue Mar 31 2020 03:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.21446 * 119.99655 * 2 1 4 4 C 1.40972 * 119.99662 * 180.02562 * 2 1 3 5 5 C 1.36157 * 126.68643 * 184.99954 * 4 2 1 6 6 O 1.35256 * 125.43988 * 359.97438 * 5 4 2 7 7 C 1.47294 * 109.12123 * 180.13156 * 5 4 2 8 8 O 1.21631 * 124.94999 * 179.86594 * 7 5 4 9 9 N 1.34497 * 110.09451 * 359.60198 * 7 5 4 10 10 C 1.36001 * 125.98596 * 180.25101 * 9 7 5 11 11 H 1.08004 * 120.00064 * 340.49834 * 10 9 7 12 12 C 1.39701 * 119.99915 * 160.50482 * 10 9 7 13 13 N 1.30950 * 120.00098 * 349.99828 * 12 10 9 14 14 Si 1.86802 * 119.99873 * 170.00065 * 12 10 9 15 15 H 1.48503 * 109.47121 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47098 * 119.99807 * 14 12 10 17 17 H 1.48496 * 109.47060 * 240.00110 * 14 12 10 18 18 C 1.46757 * 108.03023 * 0.22758 * 9 7 5 19 19 H 1.09004 * 110.12483 * 240.77317 * 18 9 7 20 20 C 1.50697 * 110.12345 * 119.16662 * 18 9 7 21 21 C 1.38270 * 119.94564 * 132.06651 * 20 18 9 22 22 C 1.38142 * 120.05397 * 179.72604 * 21 20 18 23 23 C 1.38730 * 119.94554 * 0.54962 * 22 21 20 24 24 O 1.35897 * 120.05607 * 179.74831 * 23 22 21 25 25 C 1.38733 * 119.88762 * 359.72257 * 23 22 21 26 26 C 1.38143 * 119.94325 * 0.02562 * 25 23 22 27 27 H 1.09003 * 109.46971 * 182.58502 * 1 2 3 28 28 H 1.08997 * 109.46805 * 302.58171 * 1 2 3 29 29 H 1.08999 * 109.47511 * 62.58557 * 1 2 3 30 30 H 0.96699 * 114.00250 * 180.19732 * 6 5 4 31 31 H 0.96999 * 119.99772 * 179.97438 * 13 12 10 32 32 H 1.08001 * 119.96515 * 359.97438 * 21 20 18 33 33 H 1.07998 * 120.02432 * 180.27171 * 22 21 20 34 34 H 0.96707 * 114.00330 * 269.97802 * 24 23 22 35 35 H 1.08003 * 120.02422 * 179.97438 * 25 23 22 36 36 H 1.07998 * 119.97175 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1142 1.0518 0.0000 4 6 2.2119 -1.2209 -0.0005 5 6 3.5606 -1.3816 0.0945 6 8 4.4637 -0.3810 0.2067 7 6 3.8794 -2.8190 0.0520 8 8 5.0007 -3.2861 0.1132 9 7 2.7493 -3.5399 -0.0587 10 6 2.6694 -4.8962 -0.1203 11 1 3.5378 -5.4763 -0.3954 12 6 1.4639 -5.5389 0.1720 13 7 0.4705 -4.8624 0.6920 14 14 1.2692 -7.3633 -0.1788 15 1 2.5281 -7.8923 -0.7624 16 1 0.9694 -8.0813 1.0860 17 1 0.1552 -7.5664 -1.1394 18 6 1.6175 -2.6067 -0.1006 19 1 0.9486 -2.7903 0.7403 20 6 0.8692 -2.7572 -1.4000 21 6 -0.5089 -2.8696 -1.3939 22 6 -1.1975 -3.0019 -2.5842 23 6 -0.5043 -3.0335 -3.7854 24 8 -1.1790 -3.1688 -4.9573 25 6 0.8789 -2.9262 -3.7885 26 6 1.5625 -2.7888 -2.5959 27 1 -0.3633 -1.0267 0.0464 28 1 -0.3633 0.5534 0.8659 29 1 -0.3634 0.4731 -0.9122 30 1 5.3808 -0.6830 0.2598 31 1 -0.3665 -5.3086 0.8946 32 1 -1.0476 -2.8498 -0.4581 33 1 -2.2742 -3.0853 -2.5791 34 1 -1.3061 -4.0866 -5.2344 35 1 1.4208 -2.9509 -4.7224 36 1 2.6392 -2.7056 -2.5977 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000386573.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:06 Heat of formation + Delta-G solvation = -91.560291 kcal Electronic energy + Delta-G solvation = -25524.397928 eV Core-core repulsion = 21747.379285 eV Total energy + Delta-G solvation = -3777.018642 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.098 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.79465 -39.09287 -38.26644 -37.27080 -36.37378 -35.17740 -33.41226 -31.29407 -30.48624 -29.67171 -29.24070 -25.75744 -25.23294 -22.80536 -22.34067 -21.11200 -20.39189 -18.41283 -18.09690 -17.75431 -17.15348 -16.08658 -15.71954 -15.26922 -14.96341 -14.89993 -14.58210 -14.44949 -14.06893 -14.03266 -13.69960 -13.26977 -13.07921 -12.79054 -12.53435 -12.41250 -11.92068 -11.88496 -11.68259 -11.60841 -11.40097 -11.28226 -11.00014 -10.83305 -10.63607 -10.09311 -9.79831 -9.36036 -8.73146 -8.55251 -8.34066 -8.09915 -7.94880 -6.86380 -4.30439 1.16025 1.64907 1.82860 2.87873 2.99274 3.04179 3.22443 3.65613 3.94429 3.97464 4.16825 4.48537 4.55701 4.69887 4.81361 5.16127 5.34132 5.34941 5.46492 5.59925 5.67380 5.85332 5.89281 5.96723 6.18707 6.21200 6.35679 6.47483 6.64009 6.68150 6.76799 6.80933 7.01909 7.17430 7.23281 7.33504 7.75053 7.89587 8.00488 8.26334 8.64263 8.71193 9.51917 10.12999 Molecular weight = 303.10amu Principal moments of inertia in cm(-1) A = 0.010531 B = 0.008747 C = 0.005898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2658.076195 B = 3200.181574 C = 4746.363334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.418 3.582 3 O -0.483 6.483 4 C -0.308 4.308 5 C 0.157 3.843 6 O -0.428 6.428 7 C 0.403 3.597 8 O -0.590 6.590 9 N -0.373 5.373 10 C -0.288 4.288 11 H 0.113 0.887 12 C 0.046 3.954 13 N -0.842 5.842 14 Si 0.934 3.066 15 H -0.263 1.263 16 H -0.274 1.274 17 H -0.274 1.274 18 C 0.214 3.786 19 H 0.143 0.857 20 C -0.044 4.044 21 C -0.068 4.068 22 C -0.154 4.154 23 C 0.089 3.911 24 O -0.504 6.504 25 C -0.150 4.150 26 C -0.081 4.081 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.402 0.598 31 H 0.282 0.718 32 H 0.131 0.869 33 H 0.121 0.879 34 H 0.383 0.617 35 H 0.120 0.880 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.094 0.704 -4.040 7.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.301 3.699 3 O -0.363 6.363 4 C -0.315 4.315 5 C 0.102 3.898 6 O -0.227 6.227 7 C 0.194 3.806 8 O -0.479 6.479 9 N -0.087 5.087 10 C -0.415 4.415 11 H 0.131 0.869 12 C -0.163 4.163 13 N -0.477 5.477 14 Si 0.759 3.241 15 H -0.187 1.187 16 H -0.200 1.200 17 H -0.199 1.199 18 C 0.109 3.891 19 H 0.160 0.840 20 C -0.045 4.045 21 C -0.087 4.087 22 C -0.173 4.173 23 C 0.045 3.955 24 O -0.314 6.314 25 C -0.168 4.168 26 C -0.100 4.100 27 H 0.103 0.897 28 H 0.102 0.898 29 H 0.103 0.897 30 H 0.255 0.745 31 H 0.093 0.907 32 H 0.149 0.851 33 H 0.139 0.861 34 H 0.238 0.762 35 H 0.138 0.862 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.961 1.851 -3.941 7.382 hybrid contribution 0.250 -1.792 -0.145 1.815 sum -5.712 0.059 -4.087 7.023 Atomic orbital electron populations 1.22275 0.95004 1.04755 1.03666 1.19838 0.91133 0.86804 0.72088 1.90556 1.72106 1.34055 1.39629 1.21095 0.91998 0.96933 1.21476 1.21868 0.90122 0.89065 0.88784 1.84878 1.20312 1.31039 1.86434 1.18495 0.86198 0.85945 0.89969 1.90681 1.21873 1.75334 1.60017 1.43478 1.04935 1.05496 1.54746 1.19742 0.99025 0.78738 1.44041 0.86910 1.25524 0.94982 1.01353 0.94480 1.69492 1.04579 1.37975 1.35656 0.85712 0.79234 0.80483 0.78701 1.18671 1.19987 1.19920 1.19298 0.89444 0.82915 0.97399 0.83981 1.19566 0.93411 0.97892 0.93590 1.20844 0.93365 0.97071 0.97374 1.21265 0.99892 1.04230 0.91879 1.18392 0.89881 1.02356 0.84879 1.84799 1.77102 1.31572 1.37891 1.21229 0.93356 1.03859 0.98371 1.20801 0.99828 0.97859 0.91508 0.89737 0.89807 0.89703 0.74510 0.90733 0.85105 0.86071 0.76223 0.86183 0.86541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.99 9.92 36.01 0.36 -2.63 16 2 C 0.42 8.05 6.99 -33.27 -0.23 7.81 16 3 O -0.48 -10.60 16.85 -8.80 -0.15 -10.75 16 4 C -0.31 -6.27 5.31 -104.13 -0.55 -6.82 16 5 C 0.16 3.35 7.38 -36.65 -0.27 3.08 16 6 O -0.43 -8.20 12.71 -33.44 -0.43 -8.63 16 7 C 0.40 9.60 7.89 -12.70 -0.10 9.50 16 8 O -0.59 -15.49 17.60 5.25 0.09 -15.39 16 9 N -0.37 -8.71 2.37 -111.18 -0.26 -8.98 16 10 C -0.29 -6.93 9.61 -15.16 -0.15 -7.08 16 11 H 0.11 2.83 7.86 -52.48 -0.41 2.42 16 12 C 0.05 1.02 5.16 -17.38 -0.09 0.93 16 13 N -0.84 -18.02 9.64 55.53 0.54 -17.48 16 14 Si 0.93 17.69 29.57 -169.99 -5.03 12.66 16 15 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 16 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 17 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 18 C 0.21 4.38 1.57 -69.89 -0.11 4.27 16 19 H 0.14 3.01 6.12 -51.93 -0.32 2.69 16 20 C -0.04 -0.82 3.47 -104.60 -0.36 -1.19 16 21 C -0.07 -1.13 7.29 -39.60 -0.29 -1.42 16 22 C -0.15 -2.36 9.99 -39.43 -0.39 -2.76 16 23 C 0.09 1.39 6.70 -39.22 -0.26 1.13 16 24 O -0.50 -6.83 13.50 -19.42 -0.26 -7.09 16 25 C -0.15 -2.49 9.99 -39.43 -0.39 -2.88 16 26 C -0.08 -1.53 9.22 -39.61 -0.36 -1.89 16 27 H 0.08 1.21 4.25 -51.93 -0.22 0.99 16 28 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 29 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 30 H 0.40 5.99 8.86 45.56 0.40 6.40 16 31 H 0.28 5.60 8.30 -40.82 -0.34 5.26 16 32 H 0.13 2.03 7.34 -52.49 -0.39 1.65 16 33 H 0.12 1.59 8.06 -52.49 -0.42 1.16 16 34 H 0.38 3.41 9.06 45.56 0.41 3.82 16 35 H 0.12 1.77 8.06 -52.48 -0.42 1.35 16 36 H 0.12 2.31 7.97 -52.49 -0.42 1.89 16 LS Contribution 316.21 15.07 4.77 4.77 Total: -1.00 -30.24 316.21 -5.71 -35.94 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -1.76 Total: 14.90 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: -3.21 Total: 0.05 kcal Atomic # 7 Polarization: -26.73 SS G_CDS: 0.27 Total: -26.46 kcal Atomic # 8 Polarization: -41.12 SS G_CDS: -0.74 Total: -41.87 kcal Atomic # 14 Polarization: 17.69 SS G_CDS: -5.03 Total: 12.66 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.24 -5.71 -35.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000386573.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.615 kcal (2) G-P(sol) polarization free energy of solvation -30.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds