Wall clock time and date at job start Tue Mar 31 2020 03:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.21446 * 119.99655 * 2 1 4 4 C 1.40972 * 119.99662 * 180.02562 * 2 1 3 5 5 C 1.36157 * 126.68643 * 184.99954 * 4 2 1 6 6 O 1.35256 * 125.43988 * 359.97438 * 5 4 2 7 7 C 1.47294 * 109.12123 * 180.13156 * 5 4 2 8 8 O 1.21631 * 124.94999 * 179.86594 * 7 5 4 9 9 N 1.34497 * 110.09451 * 359.60198 * 7 5 4 10 10 C 1.36001 * 125.98596 * 180.25101 * 9 7 5 11 11 H 1.08004 * 120.00064 * 340.49834 * 10 9 7 12 12 C 1.39701 * 119.99915 * 160.50482 * 10 9 7 13 13 N 1.30950 * 120.00098 * 349.99828 * 12 10 9 14 14 Si 1.86802 * 119.99873 * 170.00065 * 12 10 9 15 15 H 1.48503 * 109.47121 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47098 * 119.99807 * 14 12 10 17 17 H 1.48496 * 109.47060 * 240.00110 * 14 12 10 18 18 C 1.46757 * 108.03023 * 0.22758 * 9 7 5 19 19 H 1.09004 * 110.12483 * 240.77317 * 18 9 7 20 20 C 1.50697 * 110.12345 * 119.16662 * 18 9 7 21 21 C 1.38270 * 119.94564 * 132.06651 * 20 18 9 22 22 C 1.38142 * 120.05397 * 179.72604 * 21 20 18 23 23 C 1.38730 * 119.94554 * 0.54962 * 22 21 20 24 24 O 1.35897 * 120.05607 * 179.74831 * 23 22 21 25 25 C 1.38733 * 119.88762 * 359.72257 * 23 22 21 26 26 C 1.38143 * 119.94325 * 0.02562 * 25 23 22 27 27 H 1.09003 * 109.46971 * 182.58502 * 1 2 3 28 28 H 1.08997 * 109.46805 * 302.58171 * 1 2 3 29 29 H 1.08999 * 109.47511 * 62.58557 * 1 2 3 30 30 H 0.96699 * 114.00250 * 180.19732 * 6 5 4 31 31 H 0.96999 * 119.99772 * 179.97438 * 13 12 10 32 32 H 1.08001 * 119.96515 * 359.97438 * 21 20 18 33 33 H 1.07998 * 120.02432 * 180.27171 * 22 21 20 34 34 H 0.96707 * 114.00330 * 269.97802 * 24 23 22 35 35 H 1.08003 * 120.02422 * 179.97438 * 25 23 22 36 36 H 1.07998 * 119.97175 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1142 1.0518 0.0000 4 6 2.2119 -1.2209 -0.0005 5 6 3.5606 -1.3816 0.0945 6 8 4.4637 -0.3810 0.2067 7 6 3.8794 -2.8190 0.0520 8 8 5.0007 -3.2861 0.1132 9 7 2.7493 -3.5399 -0.0587 10 6 2.6694 -4.8962 -0.1203 11 1 3.5378 -5.4763 -0.3954 12 6 1.4639 -5.5389 0.1720 13 7 0.4705 -4.8624 0.6920 14 14 1.2692 -7.3633 -0.1788 15 1 2.5281 -7.8923 -0.7624 16 1 0.9694 -8.0813 1.0860 17 1 0.1552 -7.5664 -1.1394 18 6 1.6175 -2.6067 -0.1006 19 1 0.9486 -2.7903 0.7403 20 6 0.8692 -2.7572 -1.4000 21 6 -0.5089 -2.8696 -1.3939 22 6 -1.1975 -3.0019 -2.5842 23 6 -0.5043 -3.0335 -3.7854 24 8 -1.1790 -3.1688 -4.9573 25 6 0.8789 -2.9262 -3.7885 26 6 1.5625 -2.7888 -2.5959 27 1 -0.3633 -1.0267 0.0464 28 1 -0.3633 0.5534 0.8659 29 1 -0.3634 0.4731 -0.9122 30 1 5.3808 -0.6830 0.2598 31 1 -0.3665 -5.3086 0.8946 32 1 -1.0476 -2.8498 -0.4581 33 1 -2.2742 -3.0853 -2.5791 34 1 -1.3061 -4.0866 -5.2344 35 1 1.4208 -2.9509 -4.7224 36 1 2.6392 -2.7056 -2.5977 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000386573.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:05 Heat of formation + Delta-G solvation = -112.939578 kcal Electronic energy + Delta-G solvation = -25525.325003 eV Core-core repulsion = 21747.379285 eV Total energy + Delta-G solvation = -3777.945718 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.098 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.42452 -40.38932 -39.89182 -38.77418 -37.83148 -36.78509 -35.13058 -32.89591 -31.83683 -31.10803 -30.60958 -27.46697 -26.76650 -24.37395 -23.64242 -22.48097 -22.06710 -19.98891 -19.52551 -19.23038 -18.78706 -17.67138 -17.33702 -16.62351 -16.48884 -16.23220 -16.10688 -15.91178 -15.69355 -15.57522 -15.25589 -14.70184 -14.45310 -14.29292 -14.17519 -13.96402 -13.43572 -13.35317 -12.96340 -12.92306 -12.89077 -12.69450 -12.54794 -12.38501 -12.15469 -11.47982 -11.29149 -11.02948 -10.45638 -10.14224 -9.79978 -9.69746 -9.30848 -8.58336 -6.12915 -0.47707 0.35401 0.52556 1.33604 1.43309 1.53890 1.64232 2.07721 2.26316 2.44251 2.76751 2.89338 3.02690 3.17735 3.40959 3.67634 3.95197 4.00552 4.06656 4.15532 4.44361 4.54316 4.67563 4.72951 4.84970 4.92512 4.97753 5.05779 5.19753 5.21364 5.29541 5.44102 5.53438 5.56068 5.80047 5.97904 6.23944 6.30633 6.74184 6.84016 6.92066 6.92666 7.72306 8.41167 Molecular weight = 303.10amu Principal moments of inertia in cm(-1) A = 0.010531 B = 0.008747 C = 0.005898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2658.076195 B = 3200.181574 C = 4746.363334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.416 3.584 3 O -0.513 6.513 4 C -0.305 4.305 5 C 0.147 3.853 6 O -0.429 6.429 7 C 0.375 3.625 8 O -0.634 6.634 9 N -0.372 5.372 10 C -0.327 4.327 11 H 0.088 0.912 12 C 0.030 3.970 13 N -0.836 5.836 14 Si 0.990 3.010 15 H -0.275 1.275 16 H -0.267 1.267 17 H -0.258 1.258 18 C 0.220 3.780 19 H 0.139 0.861 20 C -0.061 4.061 21 C -0.067 4.067 22 C -0.147 4.147 23 C 0.100 3.900 24 O -0.505 6.505 25 C -0.156 4.156 26 C -0.101 4.101 27 H 0.091 0.909 28 H 0.108 0.892 29 H 0.101 0.899 30 H 0.416 0.584 31 H 0.295 0.705 32 H 0.145 0.855 33 H 0.153 0.847 34 H 0.407 0.593 35 H 0.133 0.867 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.768 0.152 -4.745 10.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.301 3.699 3 O -0.396 6.396 4 C -0.312 4.312 5 C 0.092 3.908 6 O -0.231 6.231 7 C 0.168 3.832 8 O -0.528 6.528 9 N -0.083 5.083 10 C -0.455 4.455 11 H 0.106 0.894 12 C -0.180 4.180 13 N -0.469 5.469 14 Si 0.812 3.188 15 H -0.200 1.200 16 H -0.192 1.192 17 H -0.182 1.182 18 C 0.116 3.884 19 H 0.156 0.844 20 C -0.061 4.061 21 C -0.085 4.085 22 C -0.165 4.165 23 C 0.056 3.944 24 O -0.318 6.318 25 C -0.174 4.174 26 C -0.119 4.119 27 H 0.109 0.891 28 H 0.126 0.874 29 H 0.120 0.880 30 H 0.272 0.728 31 H 0.106 0.894 32 H 0.162 0.838 33 H 0.170 0.830 34 H 0.266 0.734 35 H 0.150 0.850 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.685 1.302 -4.650 10.822 hybrid contribution 1.285 -1.674 0.020 2.110 sum -8.400 -0.373 -4.630 9.599 Atomic orbital electron populations 1.22253 0.91021 1.05854 1.05536 1.20417 0.93234 0.85531 0.70673 1.90543 1.73252 1.34750 1.41035 1.21448 0.91726 0.97775 1.20265 1.21715 0.91006 0.87999 0.90115 1.84836 1.21289 1.30553 1.86433 1.18908 0.86042 0.87202 0.91071 1.90610 1.23241 1.76390 1.62523 1.43675 1.05785 1.05790 1.53038 1.19713 0.99511 0.79316 1.46915 0.89400 1.26118 0.93979 1.04516 0.93429 1.69486 1.04740 1.39262 1.33447 0.84915 0.78926 0.76048 0.78926 1.19974 1.19186 1.18235 1.19315 0.88433 0.82155 0.98483 0.84354 1.19439 0.94346 1.00052 0.92281 1.20968 0.92221 0.96618 0.98687 1.21553 1.01346 1.02633 0.90946 1.18422 0.89366 1.00810 0.85833 1.84744 1.76427 1.33813 1.36843 1.21368 0.94315 1.03744 0.98003 1.20702 0.98797 0.99668 0.92781 0.89067 0.87397 0.88018 0.72768 0.89371 0.83785 0.82983 0.73426 0.84956 0.89186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.17 9.92 71.24 0.71 -4.46 16 2 C 0.42 15.74 6.99 26.36 0.18 15.92 16 3 O -0.51 -22.42 16.85 10.04 0.17 -22.25 16 4 C -0.31 -12.61 5.31 -19.55 -0.10 -12.71 16 5 C 0.15 6.56 7.38 24.17 0.18 6.74 16 6 O -0.43 -17.23 12.71 -70.12 -0.89 -18.12 16 7 C 0.38 19.01 7.89 86.67 0.68 19.69 16 8 O -0.63 -35.76 17.60 -4.13 -0.07 -35.84 16 9 N -0.37 -18.06 2.37 -624.07 -1.48 -19.54 16 10 C -0.33 -16.30 9.61 84.40 0.81 -15.49 16 11 H 0.09 4.70 7.86 -2.91 -0.02 4.68 16 12 C 0.03 1.31 5.16 85.18 0.44 1.75 16 13 N -0.84 -34.26 9.64 21.78 0.21 -34.05 16 14 Si 0.99 35.04 29.57 68.60 2.03 37.07 16 15 H -0.28 -10.27 7.11 99.48 0.71 -9.56 16 16 H -0.27 -9.15 7.11 99.48 0.71 -8.45 16 17 H -0.26 -8.50 7.11 99.48 0.71 -7.80 16 18 C 0.22 9.06 1.57 43.58 0.07 9.13 16 19 H 0.14 5.79 6.12 -2.39 -0.01 5.77 16 20 C -0.06 -2.22 3.47 -19.85 -0.07 -2.29 16 21 C -0.07 -2.02 7.29 22.25 0.16 -1.85 16 22 C -0.15 -3.88 9.99 22.36 0.22 -3.66 16 23 C 0.10 2.80 6.70 22.51 0.15 2.95 16 24 O -0.51 -11.58 13.50 -92.39 -1.25 -12.83 16 25 C -0.16 -4.95 9.99 22.37 0.22 -4.73 16 26 C -0.10 -3.80 9.22 22.25 0.21 -3.59 16 27 H 0.09 2.35 4.25 -2.39 -0.01 2.34 16 28 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 29 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 30 H 0.42 13.34 8.86 -74.06 -0.66 12.68 16 31 H 0.29 10.81 8.30 -92.71 -0.77 10.04 16 32 H 0.14 3.94 7.34 -2.91 -0.02 3.92 16 33 H 0.15 3.12 8.06 -2.91 -0.02 3.09 16 34 H 0.41 5.40 9.06 -74.05 -0.67 4.73 16 35 H 0.13 3.75 8.06 -2.91 -0.02 3.73 16 36 H 0.09 3.80 7.97 -2.91 -0.02 3.77 16 Total: -1.00 -66.72 316.21 2.43 -64.28 By element: Atomic # 1 Polarization: 34.02 SS G_CDS: -0.15 Total: 33.86 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: 3.87 Total: 7.39 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: -1.27 Total: -53.58 kcal Atomic # 8 Polarization: -86.98 SS G_CDS: -2.04 Total: -89.03 kcal Atomic # 14 Polarization: 35.04 SS G_CDS: 2.03 Total: 37.07 kcal Total: -66.72 2.43 -64.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000386573.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.656 kcal (2) G-P(sol) polarization free energy of solvation -66.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds