Wall clock time and date at job start Tue Mar 31 2020 04:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35909 * 116.99645 * 2 1 4 4 C 1.38804 * 119.93146 * 179.97438 * 3 2 1 5 5 C 1.37938 * 120.06974 * 180.02562 * 4 3 2 6 6 C 1.39369 * 119.92976 * 359.97438 * 5 4 3 7 7 C 1.48382 * 120.06607 * 179.97438 * 6 5 4 8 8 N 1.34852 * 126.15219 * 325.17115 * 7 6 5 9 9 C 1.30361 * 109.20071 * 180.25616 * 8 7 6 10 10 N 1.35096 * 109.00004 * 359.75273 * 9 8 7 11 11 C 1.46495 * 126.29603 * 180.02562 * 10 9 8 12 12 C 1.50696 * 109.47143 * 264.97590 * 11 10 9 13 13 H 1.07997 * 120.00168 * 359.97438 * 12 11 10 14 14 C 1.37880 * 120.00264 * 179.97438 * 12 11 10 15 15 N 1.31522 * 119.99528 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00274 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47277 * 89.99956 * 16 14 12 18 18 H 1.48502 * 109.47108 * 209.99998 * 16 14 12 19 19 H 1.48500 * 109.47138 * 329.99862 * 16 14 12 20 20 C 1.35856 * 126.14799 * 145.00175 * 7 6 5 21 21 N 1.48065 * 126.65526 * 0.02562 * 20 7 6 22 22 O 1.21803 * 119.99814 * 269.68401 * 21 20 7 23 23 O 1.21799 * 119.99983 * 89.41287 * 21 20 7 24 24 C 1.39364 * 119.86423 * 0.26000 * 6 5 4 25 25 C 1.37934 * 119.93514 * 359.46523 * 24 6 5 26 26 H 1.09008 * 109.46970 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47355 * 299.99888 * 1 2 3 28 28 H 1.09006 * 109.47211 * 60.00543 * 1 2 3 29 29 H 1.08002 * 119.96481 * 359.97438 * 4 3 2 30 30 H 1.08000 * 120.03563 * 180.02562 * 5 4 3 31 31 H 1.08001 * 125.50107 * 179.73540 * 9 8 7 32 32 H 1.09003 * 109.46797 * 24.97333 * 11 10 9 33 33 H 1.08997 * 109.47487 * 144.97129 * 11 10 9 34 34 H 0.97002 * 119.99511 * 179.97438 * 15 14 12 35 35 H 1.08002 * 120.02988 * 179.74536 * 24 6 5 36 36 H 1.08003 * 119.96909 * 180.28141 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 3.4322 1.2821 0.0005 5 6 4.0613 2.5096 0.0011 6 6 3.3035 3.6793 0.0005 7 6 3.9771 5.0014 0.0017 8 7 5.1340 5.3043 0.6250 9 6 5.4195 6.5585 0.4131 10 7 4.4558 7.1044 -0.3604 11 6 4.4009 8.4918 -0.8275 12 6 3.5495 9.3052 0.1129 13 1 3.0944 8.8356 0.9723 14 6 3.3515 10.6490 -0.1238 15 7 3.9062 11.2211 -1.1702 16 14 2.2967 11.6574 1.0423 17 1 3.1506 12.2263 2.1157 18 1 1.6447 12.7605 0.2916 19 1 1.2561 10.7872 1.6465 20 6 3.5409 6.1236 -0.6277 21 7 2.3105 6.2599 -1.4399 22 8 2.3454 6.0469 -2.6387 23 8 1.2624 6.5802 -0.9085 24 6 1.9119 3.6047 0.0049 25 6 1.2886 2.3742 -0.0013 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 4.0188 0.3753 0.0014 30 1 5.1399 2.5643 0.0011 31 1 6.2864 7.0775 0.7946 32 1 5.4089 8.9059 -0.8553 33 1 3.9682 8.5218 -1.8274 34 1 3.7666 12.1664 -1.3370 35 1 1.3221 4.5094 0.0087 36 1 0.2102 2.3157 -0.0025 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002066626.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:25:15 Heat of formation + Delta-G solvation = 45.918523 kcal Electronic energy + Delta-G solvation = -24109.039430 eV Core-core repulsion = 20370.275067 eV Total energy + Delta-G solvation = -3738.764362 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.105 amu Computer time = 2.70 seconds Orbital eigenvalues (eV) -42.42699 -41.18577 -40.11624 -37.54557 -36.12608 -34.59622 -32.63095 -31.64138 -30.97298 -29.51058 -27.80112 -27.19213 -25.61798 -23.77357 -22.70371 -22.67072 -20.93637 -20.47189 -18.47642 -18.41144 -18.10676 -17.05340 -16.94276 -16.50978 -16.06131 -15.88674 -15.17034 -14.92430 -14.64428 -14.19202 -13.98895 -13.63535 -13.43403 -12.86420 -12.59103 -12.36121 -12.20146 -11.90447 -11.45980 -11.30073 -11.28876 -11.13535 -10.98461 -10.98136 -10.66495 -10.53326 -10.34030 -10.08729 -9.32493 -9.09337 -9.00836 -8.90185 -7.85978 -6.53918 -4.66180 0.83612 1.00525 1.30667 1.54471 1.97257 2.98468 3.08897 3.10687 3.16365 3.19931 3.31790 3.76467 4.10558 4.33584 4.68684 4.79200 4.82017 4.89852 4.96021 5.05997 5.11712 5.24637 5.30977 5.43992 5.58513 5.71348 5.90188 5.96866 6.19473 6.27859 6.47208 6.51326 6.62352 6.66590 6.79871 7.22734 7.24947 7.39756 7.49047 7.89417 7.99091 8.39583 9.04937 10.54326 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.022868 B = 0.003821 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.127290 B = 7325.655928 C = 7807.465725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.318 6.318 3 C 0.130 3.870 4 C -0.152 4.152 5 C -0.043 4.043 6 C -0.052 4.052 7 C 0.110 3.890 8 N -0.482 5.482 9 C 0.234 3.766 10 N -0.397 5.397 11 C 0.220 3.780 12 C -0.557 4.557 13 H 0.071 0.929 14 C 0.073 3.927 15 N -0.884 5.884 16 Si 0.913 3.087 17 H -0.275 1.275 18 H -0.280 1.280 19 H -0.267 1.267 20 C 0.036 3.964 21 N 0.058 4.942 22 O -0.136 6.136 23 O -0.120 6.120 24 C -0.071 4.071 25 C -0.200 4.200 26 H 0.099 0.901 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.135 0.865 30 H 0.139 0.861 31 H 0.224 0.776 32 H 0.069 0.931 33 H 0.050 0.950 34 H 0.273 0.727 35 H 0.129 0.871 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.127 -16.109 2.050 16.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.231 6.231 3 C 0.084 3.916 4 C -0.171 4.171 5 C -0.062 4.062 6 C -0.053 4.053 7 C -0.025 4.025 8 N -0.200 5.200 9 C -0.050 4.050 10 N -0.077 5.077 11 C 0.103 3.897 12 C -0.595 4.595 13 H 0.089 0.911 14 C -0.133 4.133 15 N -0.520 5.520 16 Si 0.739 3.261 17 H -0.200 1.200 18 H -0.205 1.205 19 H -0.191 1.191 20 C -0.162 4.162 21 N 0.590 4.410 22 O -0.357 6.357 23 O -0.345 6.345 24 C -0.091 4.091 25 C -0.219 4.219 26 H 0.117 0.883 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.152 0.848 30 H 0.156 0.844 31 H 0.240 0.760 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.147 0.853 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.894 -16.481 2.727 16.729 hybrid contribution -1.500 1.749 -0.154 2.309 sum -2.394 -14.732 2.573 15.146 Atomic orbital electron populations 1.23077 0.78357 1.03855 1.01656 1.86056 1.21457 1.26937 1.88663 1.19110 0.92380 0.84027 0.96047 1.20348 0.91213 0.98479 1.07055 1.20975 1.00283 0.89914 0.94989 1.17730 0.92151 0.89734 1.05717 1.18641 0.94121 0.90858 0.98899 1.70554 1.12913 1.13305 1.23277 1.25018 0.95404 0.89622 0.94913 1.45994 1.14944 1.11851 1.34879 1.20240 1.01371 0.71030 0.97102 1.21182 1.32867 0.94189 1.11248 0.91126 1.24954 0.95342 0.97351 0.95650 1.69910 1.42560 1.12864 1.26645 0.86226 0.80282 0.79442 0.80186 1.20024 1.20518 1.19147 1.21330 0.91071 0.93204 1.10587 1.42244 1.00944 0.97470 1.00292 1.94534 1.92473 1.52029 0.96703 1.94540 1.18175 1.46789 1.74975 1.21185 0.93344 0.98177 0.96356 1.21079 1.00192 0.91674 1.08937 0.88284 0.92509 0.92440 0.84753 0.84364 0.75955 0.91306 0.93251 0.91727 0.85310 0.84936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.65 10.49 -19.46 -0.20 -3.85 16 3 C 0.13 1.68 6.69 -39.16 -0.26 1.42 16 4 C -0.15 -1.94 9.97 -39.48 -0.39 -2.34 16 5 C -0.04 -0.61 9.75 -39.27 -0.38 -0.99 16 6 C -0.05 -0.87 5.84 -104.88 -0.61 -1.49 16 7 C 0.11 2.10 6.62 -83.22 -0.55 1.55 16 8 N -0.48 -8.76 11.25 -11.18 -0.13 -8.88 16 9 C 0.23 4.12 12.53 -90.44 -1.13 2.99 16 10 N -0.40 -8.28 2.73 -115.99 -0.32 -8.60 16 11 C 0.22 5.17 5.89 -5.20 -0.03 5.14 16 12 C -0.56 -14.45 9.39 -34.44 -0.32 -14.78 16 13 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 14 C 0.07 1.90 5.46 -17.82 -0.10 1.80 16 15 N -0.88 -23.87 13.29 55.43 0.74 -23.14 16 16 Si 0.91 20.40 29.54 -169.99 -5.02 15.37 16 17 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 18 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 19 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 20 C 0.04 0.76 7.32 -142.78 -1.04 -0.28 16 21 N 0.06 1.25 3.57 33.29 0.12 1.37 16 22 O -0.14 -2.90 19.26 -29.46 -0.57 -3.47 16 23 O -0.12 -2.61 17.66 -29.46 -0.52 -3.13 16 24 C -0.07 -1.14 9.22 -39.27 -0.36 -1.50 16 25 C -0.20 -2.67 9.02 -39.48 -0.36 -3.02 16 26 H 0.10 0.53 8.14 -51.92 -0.42 0.10 16 27 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 28 H 0.06 0.41 7.65 -51.93 -0.40 0.01 16 29 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 30 H 0.14 1.81 8.06 -52.49 -0.42 1.39 16 31 H 0.22 2.94 8.06 -52.49 -0.42 2.52 16 32 H 0.07 1.57 8.13 -51.93 -0.42 1.14 16 33 H 0.05 1.28 8.14 -51.93 -0.42 0.85 16 34 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 35 H 0.13 2.18 5.82 -52.49 -0.31 1.88 16 36 H 0.13 1.43 6.28 -52.48 -0.33 1.10 16 LS Contribution 328.74 15.07 4.95 4.95 Total: -1.00 -29.59 328.74 -9.02 -38.60 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -3.51 Total: 1.08 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: -4.56 Total: -10.32 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: 0.41 Total: -39.25 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: -1.29 Total: -10.45 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.59 -9.02 -38.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002066626.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.522 kcal (2) G-P(sol) polarization free energy of solvation -29.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.70 seconds