Wall clock time and date at job start Tue Mar 31 2020 03:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.53006 * 109.47455 * 108.21581 * 3 2 1 5 5 N 1.46495 * 109.47180 * 180.02562 * 4 3 2 6 6 C 1.46504 * 120.00018 * 278.54509 * 5 4 3 7 7 C 1.50706 * 109.46974 * 90.00231 * 6 5 4 8 8 H 1.07997 * 119.99767 * 0.02562 * 7 6 5 9 9 C 1.37871 * 119.99471 * 180.02562 * 7 6 5 10 10 N 1.31505 * 120.00648 * 359.97438 * 9 7 6 11 11 Si 1.86807 * 119.99408 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47404 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47378 * 120.00154 * 11 9 7 14 14 H 1.48504 * 109.46592 * 239.99944 * 11 9 7 15 15 C 1.34774 * 119.99982 * 98.55142 * 5 4 3 16 16 O 1.21556 * 119.99888 * 186.35229 * 15 5 4 17 17 C 1.47844 * 119.99912 * 6.34798 * 15 5 4 18 18 C 1.39596 * 120.14682 * 317.29416 * 17 15 5 19 19 C 1.37937 * 119.85367 * 179.70065 * 18 17 15 20 20 C 1.38383 * 120.14461 * 0.59532 * 19 18 17 21 21 C 1.38340 * 120.29143 * 359.68127 * 20 19 18 22 22 N 1.48009 * 119.92802 * 180.02562 * 21 20 19 23 23 O 1.21798 * 120.00210 * 180.02562 * 22 21 20 24 24 O 1.21805 * 119.99995 * 0.02562 * 22 21 20 25 25 C 1.37981 * 120.14746 * 0.02562 * 21 20 19 26 26 H 1.09001 * 109.47268 * 348.21798 * 3 2 1 27 27 H 1.09003 * 109.47641 * 228.21995 * 3 2 1 28 28 H 1.08995 * 109.46524 * 300.00391 * 4 3 2 29 29 H 1.09001 * 109.46705 * 59.99873 * 4 3 2 30 30 H 1.09001 * 109.47142 * 210.00277 * 6 5 4 31 31 H 1.09005 * 109.47068 * 330.00275 * 6 5 4 32 32 H 0.97001 * 120.00662 * 180.02562 * 10 9 7 33 33 H 1.08004 * 120.07159 * 359.97438 * 18 17 15 34 34 H 1.07994 * 119.92990 * 180.29421 * 19 18 17 35 35 H 1.08001 * 119.85687 * 179.69778 * 20 19 18 36 36 H 1.07999 * 120.07406 * 180.02562 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1178 0.4518 -1.3702 5 7 4.5828 0.4519 -1.3704 6 6 5.3153 1.5847 -0.7990 7 6 5.5667 1.3331 0.6655 8 1 5.2162 0.4205 1.1245 9 6 6.2440 2.2680 1.4192 10 7 6.6712 3.3790 0.8601 11 14 6.5562 1.9558 3.2343 12 1 5.9792 0.6421 3.6171 13 1 8.0188 1.9483 3.4910 14 1 5.9181 3.0292 4.0380 15 6 5.2566 -0.5902 -1.8962 16 8 6.4666 -0.6455 -1.7938 17 6 4.5242 -1.6660 -2.5976 18 6 3.3327 -2.1638 -2.0674 19 6 2.6510 -3.1633 -2.7300 20 6 3.1522 -3.6810 -3.9114 21 6 4.3354 -3.1961 -4.4392 22 7 4.8639 -3.7553 -5.7036 23 8 5.9057 -3.3296 -6.1693 24 8 4.2569 -4.6411 -6.2785 25 6 5.0241 -2.1923 -3.7896 26 1 2.9717 -1.0052 0.2098 27 1 2.9711 0.6855 0.7663 28 1 2.7547 -0.2331 -2.1364 29 1 2.7540 1.4577 -1.5801 30 1 6.2677 1.6998 -1.3166 31 1 4.7262 2.4943 -0.9155 32 1 7.1481 4.0366 1.3903 33 1 2.9431 -1.7642 -1.1427 34 1 1.7266 -3.5461 -2.3234 35 1 2.6172 -4.4669 -4.4238 36 1 5.9475 -1.8143 -4.2030 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002851427.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:45:56 Heat of formation + Delta-G solvation = 31.802564 kcal Electronic energy + Delta-G solvation = -23959.801134 eV Core-core repulsion = 20220.424658 eV Total energy + Delta-G solvation = -3739.376476 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.105 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.31952 -40.57316 -38.46861 -37.09519 -36.68249 -35.59425 -33.21796 -32.21520 -31.74786 -31.08114 -27.76630 -26.71040 -24.77597 -23.98781 -22.74461 -22.53134 -20.21103 -18.80966 -18.50067 -17.92970 -17.65596 -17.27191 -16.60619 -16.33112 -15.96393 -15.46969 -14.84600 -14.68586 -14.57674 -14.18930 -13.66347 -13.42500 -13.12152 -12.94003 -12.64488 -12.37742 -12.15068 -12.12660 -11.81286 -11.68061 -11.46392 -11.34163 -11.25375 -11.19089 -10.99291 -10.80065 -10.33893 -9.87640 -9.82563 -9.70504 -9.38905 -8.61918 -8.15214 -6.23683 -4.29973 -0.37713 0.45455 1.11812 1.21187 2.56610 2.71977 2.74780 3.18399 3.21938 3.26558 3.28351 3.35583 3.92061 4.13584 4.22695 4.30968 4.36127 4.51034 4.59310 4.79582 4.88618 5.00238 5.11848 5.21718 5.24526 5.39307 5.56009 5.67462 5.70718 5.89069 6.00812 6.25167 6.68527 7.10158 7.19196 7.47891 7.50207 7.70000 7.89897 7.97936 8.48355 8.74032 9.36450 10.84510 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.015471 B = 0.004266 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.433214 B = 6562.671391 C = 7851.698427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C 0.213 3.787 3 C -0.061 4.061 4 C 0.107 3.893 5 N -0.585 5.585 6 C 0.244 3.756 7 C -0.534 4.534 8 H 0.063 0.937 9 C 0.066 3.934 10 N -0.889 5.889 11 Si 0.896 3.104 12 H -0.272 1.272 13 H -0.282 1.282 14 H -0.283 1.283 15 C 0.548 3.452 16 O -0.509 6.509 17 C -0.112 4.112 18 C -0.058 4.058 19 C -0.122 4.122 20 C -0.044 4.044 21 C -0.050 4.050 22 N 0.030 4.970 23 O -0.155 6.155 24 O -0.164 6.164 25 C -0.009 4.009 26 H 0.109 0.891 27 H 0.142 0.858 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.048 0.952 31 H 0.040 0.960 32 H 0.265 0.735 33 H 0.157 0.843 34 H 0.152 0.848 35 H 0.155 0.845 36 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.111 -10.276 -6.139 15.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.119 5.119 2 C -0.105 4.105 3 C -0.101 4.101 4 C -0.019 4.019 5 N -0.316 5.316 6 C 0.126 3.874 7 C -0.573 4.573 8 H 0.081 0.919 9 C -0.137 4.137 10 N -0.527 5.527 11 Si 0.723 3.277 12 H -0.197 1.197 13 H -0.208 1.208 14 H -0.209 1.209 15 C 0.333 3.667 16 O -0.385 6.385 17 C -0.116 4.116 18 C -0.076 4.076 19 C -0.140 4.140 20 C -0.063 4.063 21 C -0.133 4.133 22 N 0.550 4.450 23 O -0.372 6.372 24 O -0.378 6.378 25 C -0.029 4.029 26 H 0.127 0.873 27 H 0.160 0.840 28 H 0.099 0.901 29 H 0.110 0.890 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.175 0.825 34 H 0.170 0.830 35 H 0.173 0.827 36 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -10.287 -9.816 -5.430 15.220 hybrid contribution 0.774 -0.241 0.800 1.139 sum -9.513 -10.057 -4.629 14.597 Atomic orbital electron populations 1.81216 1.12919 1.09132 1.08667 1.29177 0.95118 0.93005 0.93168 1.20126 0.81052 1.06036 1.02925 1.21628 0.82104 1.03680 0.94457 1.48181 1.05027 1.20809 1.57563 1.19497 0.92641 0.81445 0.93818 1.21396 1.37574 1.04674 0.93634 0.91905 1.24915 0.95069 0.94928 0.98835 1.69914 1.37702 1.08653 1.36450 0.86481 0.78349 0.78208 0.84625 1.19664 1.20808 1.20934 1.17886 0.87221 0.81651 0.79919 1.90855 1.13238 1.76059 1.58311 1.20290 0.96167 0.99476 0.95703 1.22439 0.92040 0.93190 0.99965 1.21190 1.01350 0.97024 0.94466 1.21196 0.92166 0.97910 0.95049 1.20986 0.99688 1.03282 0.89334 1.43578 1.00126 0.99463 1.01869 1.94580 1.11144 1.63057 1.68388 1.94521 1.59501 1.22884 1.60943 1.21057 0.98786 0.90696 0.92321 0.87321 0.84024 0.90120 0.89043 0.93413 0.94161 0.92506 0.82542 0.83033 0.82731 0.82033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -5.98 18.54 42.15 0.78 -5.20 16 2 C 0.21 2.38 15.43 -20.76 -0.32 2.06 16 3 C -0.06 -0.64 4.84 -29.52 -0.14 -0.78 16 4 C 0.11 1.24 4.86 -4.04 -0.02 1.22 16 5 N -0.58 -9.60 2.48 -176.17 -0.44 -10.03 16 6 C 0.24 5.26 5.14 -5.19 -0.03 5.24 16 7 C -0.53 -12.65 8.33 -34.44 -0.29 -12.93 16 8 H 0.06 1.43 7.47 -52.49 -0.39 1.04 16 9 C 0.07 1.66 5.46 -17.83 -0.10 1.56 16 10 N -0.89 -23.85 13.28 55.43 0.74 -23.12 16 11 Si 0.90 19.63 29.54 -169.99 -5.02 14.61 16 12 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 13 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 14 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 15 C 0.55 9.33 7.30 -12.33 -0.09 9.24 16 16 O -0.51 -11.10 16.60 5.32 0.09 -11.01 16 17 C -0.11 -1.42 5.21 -104.97 -0.55 -1.97 16 18 C -0.06 -0.54 7.37 -39.19 -0.29 -0.83 16 19 C -0.12 -0.90 10.03 -39.64 -0.40 -1.30 16 20 C -0.04 -0.38 9.55 -39.49 -0.38 -0.76 16 21 C -0.05 -0.58 6.84 -80.01 -0.55 -1.13 16 22 N 0.03 0.41 4.45 33.93 0.15 0.56 16 23 O -0.15 -2.29 18.44 -29.46 -0.54 -2.84 16 24 O -0.16 -2.20 18.44 -29.46 -0.54 -2.75 16 25 C -0.01 -0.11 9.17 -39.18 -0.36 -0.47 16 26 H 0.11 0.96 6.18 -51.93 -0.32 0.63 16 27 H 0.14 1.75 7.04 -51.93 -0.37 1.38 16 28 H 0.08 0.75 4.81 -51.93 -0.25 0.50 16 29 H 0.09 1.01 8.02 -51.93 -0.42 0.59 16 30 H 0.05 1.20 7.52 -51.93 -0.39 0.81 16 31 H 0.04 0.87 7.98 -51.93 -0.41 0.46 16 32 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 33 H 0.16 1.26 3.42 -52.48 -0.18 1.08 16 34 H 0.15 0.67 8.06 -52.49 -0.42 0.25 16 35 H 0.16 1.06 7.60 -52.49 -0.40 0.66 16 36 H 0.16 2.16 7.60 -52.49 -0.40 1.76 16 LS Contribution 326.64 15.07 4.92 4.92 Total: -1.00 -30.74 326.64 -6.45 -37.19 By element: Atomic # 1 Polarization: 1.61 SS G_CDS: -3.08 Total: -1.48 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: -3.50 Total: -0.86 kcal Atomic # 7 Polarization: -39.03 SS G_CDS: 1.23 Total: -37.79 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -1.00 Total: -16.60 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.61 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.74 -6.45 -37.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002851427.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.995 kcal (2) G-P(sol) polarization free energy of solvation -30.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds