Wall clock time and date at job start Tue Mar 31 2020 03:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00140 * 2 1 4 4 H 1.48505 * 109.47131 * 239.99664 * 3 2 1 5 5 H 1.48495 * 109.47130 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46934 * 120.00288 * 3 2 1 7 7 C 1.37877 * 119.99936 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00117 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00050 * 0.02562 * 7 2 1 10 10 N 1.46495 * 109.47321 * 180.02562 * 9 7 2 11 11 C 1.34774 * 120.00046 * 179.97438 * 10 9 7 12 12 O 1.21284 * 120.00004 * 0.02562 * 11 10 9 13 13 C 1.50705 * 119.99831 * 179.97438 * 11 10 9 14 14 O 1.45210 * 109.46946 * 179.97438 * 13 11 10 15 15 C 1.34775 * 116.99711 * 179.97438 * 14 13 11 16 16 O 1.21534 * 120.00466 * 0.02562 * 15 14 13 17 17 C 1.47251 * 119.99825 * 180.02562 * 15 14 13 18 18 N 1.31627 * 126.82569 * 0.02562 * 17 15 14 19 19 N 1.28382 * 111.95218 * 180.02562 * 18 17 15 20 20 H 0.97006 * 124.36701 * 179.97438 * 19 18 17 21 21 C 1.37053 * 111.26997 * 359.97438 * 19 18 17 22 22 C 1.39127 * 134.72271 * 180.02562 * 21 19 18 23 23 C 1.36682 * 119.78420 * 179.97438 * 22 21 19 24 24 C 1.38887 * 120.89908 * 359.97438 * 23 22 21 25 25 C 1.36731 * 120.51785 * 0.02562 * 24 23 22 26 26 C 1.39176 * 119.51100 * 0.27759 * 25 24 23 27 27 H 0.97005 * 119.99753 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.47486 * 59.99400 * 9 7 2 29 29 H 1.09001 * 109.46648 * 299.99703 * 9 7 2 30 30 H 0.96997 * 119.99916 * 359.97438 * 10 9 7 31 31 H 1.08997 * 109.47239 * 60.00574 * 13 11 10 32 32 H 1.09001 * 109.47269 * 299.99855 * 13 11 10 33 33 H 1.08003 * 120.10106 * 0.02562 * 22 21 19 34 34 H 1.08008 * 119.54801 * 179.97438 * 23 22 21 35 35 H 1.07997 * 119.74493 * 179.97438 * 24 23 22 36 36 H 1.08002 * 120.24124 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2029 -3.6127 -0.0015 11 6 1.7536 -4.8834 -0.0019 12 8 0.5612 -5.1049 -0.0029 13 6 2.7330 -6.0288 -0.0022 14 8 2.0069 -7.2864 -0.0020 15 6 2.7409 -8.4167 -0.0028 16 8 3.9546 -8.3531 -0.0032 17 6 2.0724 -9.7287 -0.0032 18 7 0.7754 -9.9533 -0.0033 19 7 0.5057 -11.2085 -0.0031 20 1 -0.3922 -11.5756 -0.0029 21 6 1.6500 -11.9629 -0.0034 22 6 1.9232 -13.3270 -0.0039 23 6 3.2197 -13.7598 -0.0046 24 6 4.2735 -12.8552 -0.0055 25 6 4.0332 -11.5092 -0.0051 26 6 2.7204 -11.0472 0.0021 27 1 -0.4850 0.8401 -0.0004 28 1 0.6246 -2.5564 -0.8918 29 1 0.6240 -2.5575 0.8881 30 1 3.1566 -3.4355 -0.0010 31 1 3.3595 -5.9714 0.8878 32 1 3.3596 -5.9709 -0.8922 33 1 1.1134 -14.0417 -0.0045 34 1 3.4274 -14.8197 -0.0045 35 1 5.2909 -13.2177 -0.0056 36 1 4.8561 -10.8097 -0.0053 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006370682.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:44 Heat of formation + Delta-G solvation = -30.938711 kcal Electronic energy + Delta-G solvation = -22666.216100 eV Core-core repulsion = 18924.118957 eV Total energy + Delta-G solvation = -3742.097142 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.105 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.86791 -40.31151 -38.62947 -38.16123 -36.31666 -34.21588 -33.00229 -32.38486 -30.63620 -30.44132 -29.13308 -26.78304 -24.81134 -23.63678 -22.78569 -22.47382 -20.59639 -19.89940 -18.61191 -18.18224 -17.47654 -16.85740 -16.75620 -16.32443 -15.85396 -15.65816 -15.44043 -15.05525 -14.53041 -14.48689 -14.28904 -14.10444 -13.05044 -12.97310 -12.60817 -12.50486 -12.42368 -11.96641 -11.74707 -11.64628 -11.32144 -11.01951 -10.89196 -10.84409 -10.68200 -10.58962 -10.32887 -9.43470 -9.20617 -9.14154 -8.75754 -8.55139 -7.95765 -6.17514 -4.24961 0.39262 0.91693 1.42536 2.07891 2.50280 2.81633 3.21973 3.25776 3.30505 3.32028 3.37344 3.83404 4.03390 4.11824 4.33932 4.47198 4.56910 4.79872 4.97822 5.00968 5.17645 5.18376 5.26515 5.27440 5.37425 5.55066 5.75206 5.98169 6.10061 6.23066 6.36852 6.57989 7.24790 7.30994 7.35475 7.48574 7.61315 7.69504 7.94229 8.52884 8.73628 8.99716 9.41245 10.92547 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.045770 B = 0.002228 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.601374 B =12564.021725 C =13155.175654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.545 4.545 8 H 0.064 0.936 9 C 0.251 3.749 10 N -0.707 5.707 11 C 0.499 3.501 12 O -0.531 6.531 13 C 0.049 3.951 14 O -0.313 6.313 15 C 0.557 3.443 16 O -0.499 6.499 17 C 0.013 3.987 18 N -0.163 5.163 19 N -0.407 5.407 20 H 0.451 0.549 21 C 0.062 3.938 22 C -0.116 4.116 23 C -0.084 4.084 24 C -0.136 4.136 25 C -0.046 4.046 26 C -0.103 4.103 27 H 0.267 0.733 28 H 0.029 0.971 29 H 0.029 0.971 30 H 0.393 0.607 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.131 0.869 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.255 -28.454 -0.012 29.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.584 4.584 8 H 0.082 0.918 9 C 0.131 3.869 10 N -0.357 5.357 11 C 0.282 3.718 12 O -0.408 6.408 13 C -0.029 4.029 14 O -0.226 6.226 15 C 0.399 3.601 16 O -0.384 6.384 17 C -0.155 4.155 18 N 0.005 4.995 19 N -0.128 5.128 20 H 0.297 0.703 21 C -0.051 4.051 22 C -0.137 4.137 23 C -0.105 4.105 24 C -0.155 4.155 25 C -0.067 4.067 26 C -0.110 4.110 27 H 0.077 0.923 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.226 0.774 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.149 0.851 34 H 0.151 0.849 35 H 0.150 0.850 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 5.563 -27.803 -0.012 28.354 hybrid contribution 1.123 0.494 0.003 1.227 sum 6.687 -27.309 -0.009 28.116 Atomic orbital electron populations 1.69968 1.06113 1.27491 1.48626 1.24958 0.94943 0.99487 0.94643 0.86443 0.79380 0.82180 0.78714 1.20034 1.21076 1.20038 1.21176 0.93303 0.90311 1.53569 0.91794 1.19168 0.88169 0.81498 0.98035 1.46347 1.11503 1.05287 1.72586 1.19856 0.89118 0.83946 0.78858 1.90725 1.16279 1.84489 1.49307 1.22953 0.94468 0.80629 1.04845 1.86705 1.39332 1.13538 1.83040 1.19287 0.84728 0.83012 0.73041 1.90861 1.13814 1.87435 1.46332 1.21411 0.88816 0.91139 1.14157 1.73221 1.17711 0.98883 1.09680 1.43237 1.08888 1.01690 1.59020 0.70312 1.19236 0.86612 0.94309 1.04924 1.19814 0.97958 0.90685 1.05264 1.20780 0.91596 1.00197 0.97915 1.20883 0.99697 0.92569 1.02369 1.20423 0.94549 0.95958 0.95731 1.19311 0.94461 0.89860 1.07373 0.92335 0.95254 0.95260 0.77418 0.88202 0.88190 0.85136 0.84927 0.85006 0.84194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.02 13.29 55.43 0.74 -25.28 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.91 20.79 29.54 -169.99 -5.02 15.77 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 7 C -0.55 -14.70 9.28 -34.44 -0.32 -15.02 16 8 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 9 C 0.25 6.64 5.43 -5.19 -0.03 6.62 16 10 N -0.71 -14.80 5.55 -61.47 -0.34 -15.14 16 11 C 0.50 10.26 7.91 -10.98 -0.09 10.18 16 12 O -0.53 -13.37 16.50 -14.10 -0.23 -13.61 16 13 C 0.05 0.76 5.96 36.01 0.21 0.98 16 14 O -0.31 -5.42 9.77 -47.38 -0.46 -5.88 16 15 C 0.56 8.64 7.95 34.39 0.27 8.91 16 16 O -0.50 -7.80 16.19 -19.29 -0.31 -8.11 16 17 C 0.01 0.18 7.36 -80.78 -0.59 -0.41 16 18 N -0.16 -2.16 12.11 34.45 0.42 -1.74 16 19 N -0.41 -3.73 6.85 32.34 0.22 -3.51 16 20 H 0.45 2.31 8.96 -190.49 -1.71 0.60 16 21 C 0.06 0.57 7.38 -84.21 -0.62 -0.05 16 22 C -0.12 -0.75 10.03 -39.81 -0.40 -1.14 16 23 C -0.08 -0.49 9.96 -39.90 -0.40 -0.89 16 24 C -0.14 -0.95 9.98 -39.89 -0.40 -1.34 16 25 C -0.05 -0.45 9.87 -39.78 -0.39 -0.84 16 26 C -0.10 -1.20 6.34 -105.04 -0.67 -1.87 16 27 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 28 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.39 6.86 8.32 -40.82 -0.34 6.52 16 31 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.13 0.46 8.06 -52.48 -0.42 0.04 16 34 H 0.13 0.40 8.06 -52.48 -0.42 -0.03 16 35 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16 36 H 0.14 1.34 7.65 -52.49 -0.40 0.94 16 LS Contribution 331.58 15.07 5.00 5.00 Total: -1.00 -35.79 331.58 -8.45 -44.24 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -4.94 Total: 1.49 kcal Atomic # 6 Polarization: 10.29 SS G_CDS: -3.51 Total: 6.77 kcal Atomic # 7 Polarization: -46.71 SS G_CDS: 1.03 Total: -45.67 kcal Atomic # 8 Polarization: -26.59 SS G_CDS: -1.01 Total: -27.60 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -35.79 -8.45 -44.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006370682.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.301 kcal (2) G-P(sol) polarization free energy of solvation -35.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds