Wall clock time and date at job start Tue Mar 31 2020 04:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35762 * 116.99980 * 2 1 4 4 C 1.39435 * 119.70785 * 0.02562 * 3 2 1 5 5 C 1.36477 * 120.48243 * 180.30270 * 4 3 2 6 6 C 1.39700 * 119.75680 * 359.40095 * 5 4 3 7 7 C 1.40762 * 120.13713 * 0.57444 * 6 5 4 8 8 C 1.38330 * 119.70911 * 180.02562 * 3 2 1 9 9 N 1.37628 * 119.62128 * 179.74653 * 7 6 5 10 10 H 0.96996 * 119.18714 * 179.97438 * 9 7 6 11 11 C 1.35863 * 121.64024 * 359.95776 * 9 7 6 12 12 C 1.35300 * 122.38242 * 0.04027 * 11 9 7 13 13 N 1.40558 * 119.99934 * 179.97438 * 12 11 9 14 14 C 1.34778 * 119.99595 * 24.99848 * 13 12 11 15 15 O 1.21601 * 120.00286 * 5.63588 * 14 13 12 16 16 N 1.34781 * 119.99506 * 185.63865 * 14 13 12 17 17 C 1.37164 * 119.99513 * 180.02562 * 16 14 13 18 18 H 1.08004 * 120.00551 * 359.97438 * 17 16 14 19 19 C 1.38878 * 120.00145 * 180.02562 * 17 16 14 20 20 N 1.31484 * 119.99783 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00475 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47172 * 89.99595 * 21 19 17 23 23 H 1.48504 * 109.47382 * 209.99988 * 21 19 17 24 24 H 1.48503 * 109.47315 * 329.99770 * 21 19 17 25 25 C 1.41943 * 120.00638 * 359.97438 * 12 11 9 26 26 O 1.22056 * 121.08427 * 180.02562 * 25 12 11 27 27 H 1.08997 * 109.47260 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47221 * 300.00095 * 1 2 3 29 29 H 1.09000 * 109.47134 * 60.00108 * 1 2 3 30 30 H 1.07994 * 119.76122 * 359.97438 * 4 3 2 31 31 H 1.07995 * 120.12242 * 179.70844 * 5 4 3 32 32 H 1.08002 * 120.15490 * 359.97438 * 8 3 2 33 33 H 1.07994 * 118.81375 * 180.02562 * 11 9 7 34 34 H 0.97002 * 120.00343 * 204.99372 * 13 12 11 35 35 H 0.96996 * 120.00364 * 359.97438 * 16 14 13 36 36 H 0.96996 * 119.99950 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2097 0.0000 4 6 1.2799 2.3752 0.0005 5 6 1.8830 3.5994 -0.0057 6 6 3.2773 3.6855 0.0001 7 6 4.0578 2.5141 0.0000 8 6 3.4271 1.2750 -0.0005 9 7 5.4306 2.6113 0.0004 10 1 5.9622 1.8000 0.0007 11 6 6.0598 3.8154 0.0000 12 6 5.3828 4.9868 0.0000 13 7 6.0850 6.2044 0.0001 14 6 7.3381 6.2596 -0.4931 15 8 7.8235 5.2829 -1.0308 16 7 8.0532 7.3974 -0.3902 17 6 9.3283 7.4538 -0.8926 18 1 9.7594 6.5863 -1.3702 19 6 10.0654 8.6259 -0.7861 20 7 9.5408 9.6819 -0.2043 21 14 11.8021 8.7025 -1.4696 22 1 11.7580 9.1519 -2.8843 23 1 12.6068 9.6613 -0.6705 24 1 12.4224 7.3552 -1.3974 25 6 3.9633 4.9863 -0.0001 26 8 3.3328 6.0314 -0.0006 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 0.2020 2.3086 0.0005 31 1 1.2845 4.4984 -0.0100 32 1 4.0131 0.3679 -0.0005 33 1 7.1395 3.8385 -0.0001 34 1 5.6678 7.0050 0.3550 35 1 7.6659 8.1766 0.0384 36 1 10.0555 10.5007 -0.1303 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000013566023.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:25:08 Heat of formation + Delta-G solvation = -46.784051 kcal Electronic energy + Delta-G solvation = -23486.961011 eV Core-core repulsion = 19744.176763 eV Total energy + Delta-G solvation = -3742.784248 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.105 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.19542 -39.83596 -38.76090 -37.69850 -36.30369 -34.42172 -33.56289 -31.70965 -31.15108 -29.90688 -29.04635 -27.37112 -24.90135 -24.12167 -22.88771 -22.36635 -20.24293 -19.09213 -18.49838 -18.32996 -17.55309 -16.93900 -16.35168 -16.11050 -15.83649 -15.52562 -15.25193 -14.90283 -14.50458 -14.06460 -13.99020 -13.62939 -13.49340 -13.15463 -13.07286 -12.96616 -12.72822 -12.41447 -12.32406 -11.53000 -11.24813 -11.18737 -11.09569 -10.40301 -10.26133 -10.22296 -9.60994 -9.50433 -8.99428 -8.76946 -8.38349 -8.04174 -6.99002 -6.39221 -3.81311 0.75888 1.02012 1.88817 2.67072 3.03747 3.19024 3.21404 3.27291 3.31957 3.66989 3.94022 4.26073 4.31927 4.48719 4.58428 4.72574 4.78749 4.80468 4.96089 5.10695 5.13850 5.25165 5.32744 5.44590 5.70546 5.73691 5.90227 6.02260 6.11045 6.25894 6.40128 6.95453 7.04479 7.16051 7.41941 7.51768 7.61448 8.06320 8.31439 8.66687 9.14927 9.55474 10.02133 10.79436 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.042232 B = 0.002805 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.841814 B = 9980.624457 C =10551.598211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.315 6.315 3 C 0.187 3.813 4 C -0.255 4.255 5 C 0.018 3.982 6 C -0.235 4.235 7 C 0.239 3.761 8 C -0.222 4.222 9 N -0.596 5.596 10 H 0.421 0.579 11 C 0.116 3.884 12 C -0.006 4.006 13 N -0.673 5.673 14 C 0.647 3.353 15 O -0.622 6.622 16 N -0.572 5.572 17 C -0.290 4.290 18 H 0.105 0.895 19 C 0.019 3.981 20 N -0.904 5.904 21 Si 0.934 3.066 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.270 1.270 25 C 0.420 3.580 26 O -0.501 6.501 27 H 0.100 0.900 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.132 0.868 31 H 0.140 0.860 32 H 0.139 0.861 33 H 0.194 0.806 34 H 0.405 0.595 35 H 0.394 0.606 36 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.890 -17.281 3.015 23.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.227 6.227 3 C 0.140 3.860 4 C -0.275 4.275 5 C -0.001 4.001 6 C -0.241 4.241 7 C 0.131 3.869 8 C -0.244 4.244 9 N -0.207 5.207 10 H 0.257 0.743 11 C -0.013 4.013 12 C -0.109 4.109 13 N -0.321 5.321 14 C 0.348 3.652 15 O -0.507 6.507 16 N -0.211 5.211 17 C -0.419 4.419 18 H 0.123 0.877 19 C -0.182 4.182 20 N -0.546 5.546 21 Si 0.761 3.239 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.195 1.195 25 C 0.308 3.692 26 O -0.385 6.385 27 H 0.119 0.881 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.150 0.850 31 H 0.158 0.842 32 H 0.157 0.843 33 H 0.210 0.790 34 H 0.240 0.760 35 H 0.228 0.772 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.484 -17.384 2.578 23.422 hybrid contribution 0.440 0.728 -0.039 0.851 sum -15.044 -16.656 2.539 22.587 Atomic orbital electron populations 1.23116 0.77922 1.04056 1.01793 1.86030 1.21804 1.26976 1.87914 1.18781 0.91461 0.84105 0.91629 1.20856 1.00257 0.91927 1.14430 1.20569 0.92572 0.97679 0.89287 1.19936 0.94373 0.93170 1.16631 1.17567 0.83320 0.93152 0.92851 1.19579 0.92021 0.96135 1.16710 1.41167 1.03801 1.08899 1.66789 0.74279 1.22137 1.00226 0.82851 0.96093 1.17984 0.91705 0.86447 1.14755 1.42201 1.14908 1.09141 1.65822 1.15844 0.80559 0.85535 0.83216 1.90604 1.70925 1.36189 1.52956 1.41009 1.14251 1.10694 1.55114 1.19584 0.88210 0.99354 1.34775 0.87742 1.25238 1.00334 0.94968 0.97664 1.69648 1.38376 1.02702 1.43825 0.85801 0.81374 0.78171 0.78552 1.20474 1.20978 1.19486 1.18330 0.87636 0.88174 0.75090 1.90713 1.69770 1.33962 1.44078 0.88141 0.92292 0.92283 0.84989 0.84237 0.84315 0.78955 0.75967 0.77200 0.91901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.80 101.05 0.99 1.13 16 2 O -0.31 -2.88 10.48 -19.00 -0.20 -3.08 16 3 C 0.19 1.95 6.68 -39.10 -0.26 1.69 16 4 C -0.25 -2.57 8.96 -39.77 -0.36 -2.93 16 5 C 0.02 0.22 9.60 -39.67 -0.38 -0.16 16 6 C -0.24 -3.45 5.89 -104.82 -0.62 -4.07 16 7 C 0.24 3.01 6.66 -84.01 -0.56 2.45 16 8 C -0.22 -2.36 9.84 -39.25 -0.39 -2.74 16 9 N -0.60 -7.15 5.32 -10.65 -0.06 -7.21 16 10 H 0.42 3.50 8.78 -40.82 -0.36 3.14 16 11 C 0.12 1.87 9.83 -16.81 -0.17 1.70 16 12 C -0.01 -0.12 6.45 -83.48 -0.54 -0.66 16 13 N -0.67 -13.65 5.32 -14.13 -0.08 -13.72 16 14 C 0.65 15.43 8.30 -86.91 -0.72 14.71 16 15 O -0.62 -15.88 13.10 5.28 0.07 -15.81 16 16 N -0.57 -14.58 5.29 -15.34 -0.08 -14.66 16 17 C -0.29 -7.97 9.68 -14.93 -0.14 -8.11 16 18 H 0.10 2.96 7.16 -52.48 -0.38 2.58 16 19 C 0.02 0.52 5.50 -17.46 -0.10 0.42 16 20 N -0.90 -24.79 13.05 55.49 0.72 -24.06 16 21 Si 0.93 20.95 29.55 -169.99 -5.02 15.92 16 22 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 25 C 0.42 7.50 6.97 -34.59 -0.24 7.25 16 26 O -0.50 -9.98 16.87 4.87 0.08 -9.90 16 27 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.26 7.64 -51.93 -0.40 -0.13 16 29 H 0.06 0.27 7.64 -51.93 -0.40 -0.13 16 30 H 0.13 0.97 6.24 -52.49 -0.33 0.64 16 31 H 0.14 1.64 7.78 -52.49 -0.41 1.23 16 32 H 0.14 1.16 8.06 -52.49 -0.42 0.73 16 33 H 0.19 3.38 5.62 -52.49 -0.29 3.09 16 34 H 0.41 7.72 8.48 -40.82 -0.35 7.37 16 35 H 0.39 9.77 7.92 -40.82 -0.32 9.45 16 36 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 316.21 15.07 4.77 4.77 Total: -1.00 -33.27 316.21 -6.48 -39.75 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: -3.21 Total: 17.33 kcal Atomic # 6 Polarization: 14.16 SS G_CDS: -3.48 Total: 10.68 kcal Atomic # 7 Polarization: -60.17 SS G_CDS: 0.51 Total: -59.65 kcal Atomic # 8 Polarization: -28.74 SS G_CDS: -0.05 Total: -28.79 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -33.27 -6.48 -39.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013566023.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.036 kcal (2) G-P(sol) polarization free energy of solvation -33.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds