Wall clock time and date at job start Tue Mar 31 2020 04:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34505 * 124.44807 * 2 1 4 4 O 1.21492 * 125.66274 * 359.95539 * 3 2 1 5 5 C 1.47487 * 108.66978 * 179.97438 * 3 2 1 6 6 C 1.38843 * 134.17509 * 180.02562 * 5 3 2 7 7 C 1.38205 * 119.83835 * 179.97438 * 6 5 3 8 8 C 1.39044 * 120.39478 * 0.02562 * 7 6 5 9 9 N 1.39059 * 119.85969 * 180.02562 * 8 7 6 10 10 C 1.46495 * 119.99987 * 359.97438 * 9 8 7 11 11 C 1.50705 * 109.47141 * 180.02562 * 10 9 8 12 12 O 1.21290 * 120.00064 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99921 * 179.97438 * 11 10 9 14 14 C 1.37099 * 119.99981 * 180.02562 * 13 11 10 15 15 H 1.07994 * 119.99972 * 359.97438 * 14 13 11 16 16 C 1.38956 * 119.99865 * 180.02562 * 14 13 11 17 17 N 1.31409 * 120.00193 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99786 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47066 * 59.99560 * 18 16 14 20 20 H 1.48500 * 109.47024 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.46831 * 299.99866 * 18 16 14 22 22 C 1.39546 * 120.28293 * 0.02562 * 8 7 6 23 23 C 1.38258 * 119.64514 * 359.96741 * 22 8 7 24 24 C 1.34534 * 124.44985 * 179.97438 * 2 1 3 25 25 O 1.21444 * 125.74780 * 0.02562 * 24 2 1 26 26 H 1.09000 * 109.46835 * 270.02430 * 1 2 3 27 27 H 1.09000 * 109.46856 * 30.02424 * 1 2 3 28 28 H 1.08990 * 109.46916 * 150.02575 * 1 2 3 29 29 H 1.07998 * 120.08747 * 359.94934 * 6 5 3 30 30 H 1.07997 * 119.80690 * 179.72344 * 7 6 5 31 31 H 0.97005 * 119.99980 * 179.97438 * 9 8 7 32 32 H 1.09001 * 109.47538 * 300.00369 * 10 9 8 33 33 H 1.08997 * 109.47427 * 60.00365 * 10 9 8 34 34 H 0.97008 * 120.00102 * 0.02562 * 13 11 10 35 35 H 0.96999 * 119.99965 * 179.97438 * 17 16 14 36 36 H 1.08003 * 120.17770 * 180.02562 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2259 1.1092 0.0000 4 8 1.8125 2.2516 -0.0008 5 6 3.6452 0.7081 0.0006 6 6 4.8470 1.4033 0.0013 7 6 6.0425 0.7099 0.0023 8 6 6.0493 -0.6805 0.0021 9 7 7.2586 -1.3670 0.0036 10 6 8.5219 -0.6252 0.0050 11 6 9.6746 -1.5961 0.0059 12 8 9.4617 -2.7902 0.0050 13 7 10.9419 -1.1375 0.0066 14 6 11.9905 -2.0207 0.0069 15 1 11.8010 -3.0839 0.0070 16 6 13.2971 -1.5479 0.0082 17 7 13.5278 -0.2542 0.0087 18 14 14.7258 -2.7514 0.0094 19 1 14.6545 -3.6055 -1.2033 20 1 16.0064 -1.9994 0.0113 21 1 14.6522 -3.6058 1.2217 22 6 4.8477 -1.3901 0.0003 23 6 3.6479 -0.7031 -0.0006 24 6 2.2261 -1.1094 0.0005 25 8 1.8146 -2.2520 0.0006 26 1 -0.3633 0.0004 1.0277 27 1 -0.3633 0.8898 -0.5142 28 1 -0.3633 -0.8901 -0.5134 29 1 4.8478 2.4833 0.0007 30 1 6.9770 1.2512 -0.0016 31 1 7.2657 -2.3370 0.0039 32 1 8.5761 0.0018 -0.8850 33 1 8.5741 0.0020 0.8949 34 1 11.1122 -0.1825 0.0070 35 1 14.4399 0.0758 0.0100 36 1 4.8550 -2.4701 0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020043635.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:22:57 Heat of formation + Delta-G solvation = -49.826578 kcal Electronic energy + Delta-G solvation = -22914.923109 eV Core-core repulsion = 19172.006927 eV Total energy + Delta-G solvation = -3742.916182 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.105 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -42.32972 -39.38647 -38.71681 -38.28276 -36.08905 -35.22485 -34.12124 -31.71545 -31.56730 -30.84626 -27.92791 -26.84384 -25.12880 -24.25951 -23.23705 -21.71655 -20.01264 -19.60791 -18.25843 -18.00244 -17.41123 -17.13522 -16.91625 -15.72513 -15.62212 -15.45922 -15.07071 -14.84825 -14.44326 -14.19927 -14.09687 -14.05919 -13.71627 -13.63893 -13.17195 -13.00141 -12.86951 -12.49522 -12.19904 -11.78139 -11.71441 -11.20097 -10.61782 -10.58977 -10.46712 -10.40917 -10.38083 -10.01717 -9.73803 -9.36790 -8.79517 -8.23048 -7.64473 -6.63083 -4.05400 0.04976 0.97341 2.01045 2.18226 2.82108 3.05733 3.10740 3.15524 3.21133 3.55846 3.60774 3.71855 4.02222 4.25146 4.52627 4.66280 4.80808 4.88828 4.97808 5.04190 5.05933 5.17235 5.25990 5.32075 5.44286 5.63861 5.64764 5.79022 5.88335 5.95827 6.01587 6.34806 6.49700 7.05867 7.07679 7.35360 7.53613 7.62896 7.81082 8.31501 8.93000 9.25027 9.72532 10.53432 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.040938 B = 0.002410 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.792287 B =11616.292130 C =12279.638882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.584 5.584 3 C 0.583 3.417 4 O -0.481 6.481 5 C -0.229 4.229 6 C 0.019 3.981 7 C -0.197 4.197 8 C 0.258 3.742 9 N -0.703 5.703 10 C 0.105 3.895 11 C 0.425 3.575 12 O -0.595 6.595 13 N -0.546 5.546 14 C -0.307 4.307 15 H 0.105 0.895 16 C 0.028 3.972 17 N -0.894 5.894 18 Si 0.934 3.066 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.272 1.272 22 C -0.120 4.120 23 C -0.090 4.090 24 C 0.577 3.423 25 O -0.469 6.469 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.138 0.862 30 H 0.141 0.859 31 H 0.417 0.583 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.396 0.604 35 H 0.276 0.724 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.888 4.982 -0.090 18.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.326 5.326 3 C 0.375 3.625 4 O -0.354 6.354 5 C -0.236 4.236 6 C -0.001 4.001 7 C -0.221 4.221 8 C 0.147 3.853 9 N -0.329 5.329 10 C -0.023 4.023 11 C 0.210 3.790 12 O -0.481 6.481 13 N -0.181 5.181 14 C -0.437 4.437 15 H 0.123 0.877 16 C -0.176 4.176 17 N -0.533 5.533 18 Si 0.761 3.239 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.197 1.197 22 C -0.143 4.143 23 C -0.094 4.094 24 C 0.367 3.633 25 O -0.340 6.340 26 H 0.091 0.909 27 H 0.107 0.893 28 H 0.106 0.894 29 H 0.156 0.844 30 H 0.159 0.841 31 H 0.257 0.743 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.229 0.771 35 H 0.086 0.914 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -18.122 4.365 -0.091 18.640 hybrid contribution 0.843 -0.286 0.015 0.890 sum -17.279 4.079 -0.076 17.754 Atomic orbital electron populations 1.21853 0.75794 1.04654 1.03642 1.46403 1.09092 1.08661 1.68472 1.18308 0.86683 0.83670 0.73837 1.90781 1.79631 1.19446 1.45523 1.19991 0.93264 0.93965 1.16333 1.20386 0.88989 1.00061 0.90658 1.20850 0.98900 0.91937 1.10375 1.17946 0.85773 0.91686 0.89910 1.44649 1.01669 1.10183 1.76396 1.21138 0.83632 0.94862 1.02715 1.19613 0.84080 0.89084 0.86228 1.90525 1.84095 1.16204 1.57291 1.41785 1.03953 1.09966 1.62366 1.19684 0.83894 0.91512 1.48575 0.87681 1.25332 0.98997 0.96700 0.96526 1.69589 1.22548 1.12302 1.48908 0.85860 0.79240 0.79581 0.79264 1.19694 1.20773 1.19702 1.20112 0.88512 1.00410 1.05246 1.20033 0.92715 0.94401 1.02260 1.18443 0.86702 0.83890 0.74292 1.90797 1.79570 1.19445 1.44209 0.90934 0.89334 0.89415 0.84396 0.84095 0.74287 0.89790 0.89782 0.77062 0.91411 0.84181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.63 10.77 59.85 0.64 1.27 16 2 N -0.58 -6.45 3.02 -125.13 -0.38 -6.83 16 3 C 0.58 7.11 8.00 -12.61 -0.10 7.01 16 4 O -0.48 -6.75 17.68 5.37 0.09 -6.66 16 5 C -0.23 -2.67 6.40 -104.81 -0.67 -3.34 16 6 C 0.02 0.19 10.08 -39.37 -0.40 -0.21 16 7 C -0.20 -2.05 9.28 -39.29 -0.36 -2.42 16 8 C 0.26 3.08 6.66 -83.80 -0.56 2.52 16 9 N -0.70 -9.61 5.68 -59.77 -0.34 -9.95 16 10 C 0.10 1.52 5.37 -5.19 -0.03 1.49 16 11 C 0.42 8.80 7.85 -10.98 -0.09 8.71 16 12 O -0.59 -14.39 15.24 5.55 0.08 -14.31 16 13 N -0.55 -12.46 5.29 -10.96 -0.06 -12.52 16 14 C -0.31 -7.93 9.68 -14.93 -0.14 -8.08 16 15 H 0.11 2.85 7.16 -52.49 -0.38 2.48 16 16 C 0.03 0.69 5.50 -17.47 -0.10 0.60 16 17 N -0.89 -22.62 13.05 55.50 0.72 -21.90 16 18 Si 0.93 19.75 29.55 -169.99 -5.02 14.72 16 19 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 20 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16 21 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 22 C -0.12 -1.41 9.93 -39.09 -0.39 -1.80 16 23 C -0.09 -1.08 6.40 -104.85 -0.67 -1.75 16 24 C 0.58 7.17 8.03 -12.43 -0.10 7.07 16 25 O -0.47 -6.75 17.68 5.41 0.10 -6.65 16 26 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.09 0.60 7.96 -51.93 -0.41 0.19 16 28 H 0.09 0.60 7.96 -51.93 -0.41 0.19 16 29 H 0.14 1.13 8.06 -52.49 -0.42 0.70 16 30 H 0.14 1.25 6.66 -52.49 -0.35 0.90 16 31 H 0.42 6.20 7.44 -40.82 -0.30 5.90 16 32 H 0.08 1.06 7.92 -51.93 -0.41 0.65 16 33 H 0.08 1.06 7.93 -51.93 -0.41 0.65 16 34 H 0.40 8.49 7.90 -40.82 -0.32 8.17 16 35 H 0.28 6.64 8.31 -40.82 -0.34 6.30 16 36 H 0.14 1.53 8.06 -52.48 -0.42 1.11 16 LS Contribution 325.97 15.07 4.91 4.91 Total: -1.00 -30.67 325.97 -6.25 -36.92 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -3.40 Total: 11.16 kcal Atomic # 6 Polarization: 14.05 SS G_CDS: -2.96 Total: 11.09 kcal Atomic # 7 Polarization: -51.14 SS G_CDS: -0.05 Total: -51.19 kcal Atomic # 8 Polarization: -27.89 SS G_CDS: 0.28 Total: -27.62 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.72 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.67 -6.25 -36.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020043635.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.904 kcal (2) G-P(sol) polarization free energy of solvation -30.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds