Wall clock time and date at job start Tue Mar 31 2020 04:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34505 * 124.44807 * 2 1 4 4 O 1.21492 * 125.66274 * 359.95539 * 3 2 1 5 5 C 1.47487 * 108.66978 * 179.97438 * 3 2 1 6 6 C 1.38843 * 134.17509 * 180.02562 * 5 3 2 7 7 C 1.38205 * 119.83835 * 179.97438 * 6 5 3 8 8 C 1.39044 * 120.39478 * 0.02562 * 7 6 5 9 9 N 1.39059 * 119.85969 * 180.02562 * 8 7 6 10 10 C 1.46495 * 119.99987 * 359.97438 * 9 8 7 11 11 C 1.50705 * 109.47141 * 180.02562 * 10 9 8 12 12 O 1.21290 * 120.00064 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99921 * 179.97438 * 11 10 9 14 14 C 1.37099 * 119.99981 * 180.02562 * 13 11 10 15 15 H 1.07994 * 119.99972 * 359.97438 * 14 13 11 16 16 C 1.38956 * 119.99865 * 180.02562 * 14 13 11 17 17 N 1.31409 * 120.00193 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99786 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47066 * 59.99560 * 18 16 14 20 20 H 1.48500 * 109.47024 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.46831 * 299.99866 * 18 16 14 22 22 C 1.39546 * 120.28293 * 0.02562 * 8 7 6 23 23 C 1.38258 * 119.64514 * 359.96741 * 22 8 7 24 24 C 1.34534 * 124.44985 * 179.97438 * 2 1 3 25 25 O 1.21444 * 125.74780 * 0.02562 * 24 2 1 26 26 H 1.09000 * 109.46835 * 270.02430 * 1 2 3 27 27 H 1.09000 * 109.46856 * 30.02424 * 1 2 3 28 28 H 1.08990 * 109.46916 * 150.02575 * 1 2 3 29 29 H 1.07998 * 120.08747 * 359.94934 * 6 5 3 30 30 H 1.07997 * 119.80690 * 179.72344 * 7 6 5 31 31 H 0.97005 * 119.99980 * 179.97438 * 9 8 7 32 32 H 1.09001 * 109.47538 * 300.00369 * 10 9 8 33 33 H 1.08997 * 109.47427 * 60.00365 * 10 9 8 34 34 H 0.97008 * 120.00102 * 0.02562 * 13 11 10 35 35 H 0.96999 * 119.99965 * 179.97438 * 17 16 14 36 36 H 1.08003 * 120.17770 * 180.02562 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2259 1.1092 0.0000 4 8 1.8125 2.2516 -0.0008 5 6 3.6452 0.7081 0.0006 6 6 4.8470 1.4033 0.0013 7 6 6.0425 0.7099 0.0023 8 6 6.0493 -0.6805 0.0021 9 7 7.2586 -1.3670 0.0036 10 6 8.5219 -0.6252 0.0050 11 6 9.6746 -1.5961 0.0059 12 8 9.4617 -2.7902 0.0050 13 7 10.9419 -1.1375 0.0066 14 6 11.9905 -2.0207 0.0069 15 1 11.8010 -3.0839 0.0070 16 6 13.2971 -1.5479 0.0082 17 7 13.5278 -0.2542 0.0087 18 14 14.7258 -2.7514 0.0094 19 1 14.6545 -3.6055 -1.2033 20 1 16.0064 -1.9994 0.0113 21 1 14.6522 -3.6058 1.2217 22 6 4.8477 -1.3901 0.0003 23 6 3.6479 -0.7031 -0.0006 24 6 2.2261 -1.1094 0.0005 25 8 1.8146 -2.2520 0.0006 26 1 -0.3633 0.0004 1.0277 27 1 -0.3633 0.8898 -0.5142 28 1 -0.3633 -0.8901 -0.5134 29 1 4.8478 2.4833 0.0007 30 1 6.9770 1.2512 -0.0016 31 1 7.2657 -2.3370 0.0039 32 1 8.5761 0.0018 -0.8850 33 1 8.5741 0.0020 0.8949 34 1 11.1122 -0.1825 0.0070 35 1 14.4399 0.0758 0.0100 36 1 4.8550 -2.4701 0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020043635.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:22:55 Heat of formation + Delta-G solvation = -71.576176 kcal Electronic energy + Delta-G solvation = -22915.866242 eV Core-core repulsion = 19172.006927 eV Total energy + Delta-G solvation = -3743.859315 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.105 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -43.25696 -40.61941 -39.73165 -39.65303 -37.12317 -36.38975 -35.78927 -33.37740 -32.56121 -31.86501 -29.02668 -27.84985 -26.54039 -25.50110 -24.10358 -22.69500 -21.30565 -20.80911 -20.02932 -19.02746 -18.37584 -18.27833 -17.83152 -17.15552 -16.75032 -16.47669 -16.37951 -16.28867 -15.71962 -15.64762 -15.13057 -14.98927 -14.78546 -14.68029 -14.20931 -14.04030 -13.83850 -13.53819 -13.50433 -13.35548 -12.91094 -12.71112 -12.46431 -12.14075 -11.56708 -11.55876 -11.44614 -11.36382 -10.89398 -10.53773 -10.22877 -10.08104 -8.61849 -8.50758 -5.99806 -0.90083 0.10577 1.07557 1.33212 1.38276 1.43613 1.52939 1.88238 1.94538 2.05796 2.32107 2.69198 2.78790 3.15108 3.17341 3.32489 3.68539 4.00749 4.10128 4.18658 4.24561 4.34668 4.40403 4.44230 4.49338 4.50400 4.70448 4.79385 4.89396 5.07527 5.15323 5.38816 5.47773 5.59548 5.89267 6.11662 6.11762 6.50855 6.53984 6.60942 7.06267 7.47055 7.99371 8.65426 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.040938 B = 0.002410 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.792287 B =11616.292130 C =12279.638882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.582 5.582 3 C 0.585 3.415 4 O -0.500 6.500 5 C -0.233 4.233 6 C 0.025 3.975 7 C -0.186 4.186 8 C 0.251 3.749 9 N -0.713 5.713 10 C 0.119 3.881 11 C 0.427 3.573 12 O -0.632 6.632 13 N -0.559 5.559 14 C -0.337 4.337 15 H 0.081 0.919 16 C -0.007 4.007 17 N -0.912 5.912 18 Si 0.990 3.010 19 H -0.272 1.272 20 H -0.271 1.271 21 H -0.272 1.272 22 C -0.122 4.122 23 C -0.101 4.101 24 C 0.579 3.421 25 O -0.494 6.494 26 H 0.086 0.914 27 H 0.099 0.901 28 H 0.095 0.905 29 H 0.163 0.837 30 H 0.164 0.836 31 H 0.410 0.590 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.402 0.598 35 H 0.280 0.720 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.179 6.389 -0.070 19.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.324 5.324 3 C 0.378 3.622 4 O -0.374 6.374 5 C -0.240 4.240 6 C 0.006 3.994 7 C -0.210 4.210 8 C 0.141 3.859 9 N -0.340 5.340 10 C -0.008 4.008 11 C 0.215 3.785 12 O -0.520 6.520 13 N -0.195 5.195 14 C -0.467 4.467 15 H 0.099 0.901 16 C -0.208 4.208 17 N -0.552 5.552 18 Si 0.814 3.186 19 H -0.197 1.197 20 H -0.196 1.196 21 H -0.198 1.198 22 C -0.145 4.145 23 C -0.105 4.105 24 C 0.369 3.631 25 O -0.367 6.367 26 H 0.104 0.896 27 H 0.117 0.883 28 H 0.114 0.886 29 H 0.181 0.819 30 H 0.182 0.818 31 H 0.248 0.752 32 H 0.130 0.870 33 H 0.130 0.870 34 H 0.236 0.764 35 H 0.089 0.911 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -18.452 5.812 -0.072 19.346 hybrid contribution 0.792 -0.716 0.010 1.068 sum -17.660 5.095 -0.062 18.380 Atomic orbital electron populations 1.22126 0.73977 1.05610 1.04902 1.46483 1.10286 1.07914 1.67672 1.18383 0.87025 0.83500 0.73277 1.90773 1.79995 1.20088 1.46588 1.20154 0.93628 0.93802 1.16386 1.20673 0.88143 1.01287 0.89324 1.21122 0.99959 0.91193 1.08693 1.18011 0.84945 0.92309 0.90612 1.44574 1.01860 1.09768 1.77760 1.21071 0.81194 0.93251 1.05311 1.20681 0.84894 0.89625 0.83309 1.90506 1.84919 1.18565 1.58037 1.41816 1.04273 1.09861 1.63534 1.19617 0.85519 0.91104 1.50462 0.90099 1.26002 1.00614 0.98250 0.95920 1.69636 1.23168 1.13172 1.49254 0.85026 0.76868 0.77781 0.78946 1.19747 1.19586 1.19762 1.20173 0.88605 1.00686 1.05020 1.20048 0.92576 0.94785 1.03136 1.18539 0.87092 0.83770 0.73666 1.90782 1.80003 1.20348 1.45600 0.89580 0.88272 0.88607 0.81919 0.81836 0.75209 0.87029 0.87023 0.76365 0.91072 0.84083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.03 10.77 127.77 1.38 2.41 16 2 N -0.58 -12.20 3.02 -786.70 -2.38 -14.58 16 3 C 0.59 13.40 8.00 86.72 0.69 14.09 16 4 O -0.50 -13.23 17.68 -3.69 -0.07 -13.30 16 5 C -0.23 -4.98 6.40 -19.99 -0.13 -5.11 16 6 C 0.03 0.43 10.08 22.41 0.23 0.66 16 7 C -0.19 -3.25 9.28 22.46 0.21 -3.04 16 8 C 0.25 5.46 6.66 38.50 0.26 5.71 16 9 N -0.71 -18.32 5.68 -343.01 -1.95 -20.27 16 10 C 0.12 3.16 5.37 85.64 0.46 3.62 16 11 C 0.43 17.49 7.85 87.66 0.69 18.17 16 12 O -0.63 -30.94 15.24 -3.06 -0.05 -30.99 16 13 N -0.56 -25.44 5.29 -306.98 -1.62 -27.06 16 14 C -0.34 -17.67 9.68 84.04 0.81 -16.85 16 15 H 0.08 4.54 7.16 -2.91 -0.02 4.52 16 16 C -0.01 -0.33 5.50 84.93 0.47 0.13 16 17 N -0.91 -45.71 13.05 21.66 0.28 -45.43 16 18 Si 0.99 40.30 29.55 68.60 2.03 42.32 16 19 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 20 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 21 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 22 C -0.12 -2.75 9.93 22.59 0.22 -2.52 16 23 C -0.10 -2.32 6.40 -20.01 -0.13 -2.45 16 24 C 0.58 14.02 8.03 86.83 0.70 14.72 16 25 O -0.49 -14.13 17.68 -3.54 -0.06 -14.20 16 26 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.10 1.19 7.96 -2.39 -0.02 1.18 16 28 H 0.10 1.20 7.96 -2.39 -0.02 1.18 16 29 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16 30 H 0.16 2.13 6.66 -2.91 -0.02 2.11 16 31 H 0.41 11.99 7.44 -92.70 -0.69 11.30 16 32 H 0.11 2.41 7.92 -2.39 -0.02 2.39 16 33 H 0.11 2.41 7.93 -2.39 -0.02 2.39 16 34 H 0.40 16.98 7.90 -92.70 -0.73 16.25 16 35 H 0.28 13.21 8.31 -92.71 -0.77 12.44 16 36 H 0.14 3.07 8.06 -2.91 -0.02 3.05 16 Total: -1.00 -66.36 325.97 1.79 -64.57 By element: Atomic # 1 Polarization: 29.64 SS G_CDS: -0.25 Total: 29.39 kcal Atomic # 6 Polarization: 23.68 SS G_CDS: 5.86 Total: 29.54 kcal Atomic # 7 Polarization: -101.67 SS G_CDS: -5.67 Total: -107.34 kcal Atomic # 8 Polarization: -58.31 SS G_CDS: -0.17 Total: -58.48 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 2.03 Total: 42.32 kcal Total: -66.36 1.79 -64.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020043635.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.007 kcal (2) G-P(sol) polarization free energy of solvation -66.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds