Wall clock time and date at job start Tue Mar 31 2020 03:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 119.99606 * 2 1 4 4 H 1.48493 * 109.47156 * 270.00076 * 3 2 1 5 5 H 1.48499 * 109.46885 * 30.00184 * 3 2 1 6 6 H 1.48499 * 109.46911 * 150.00309 * 3 2 1 7 7 C 1.37873 * 120.00213 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00340 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00019 * 179.97438 * 7 2 1 10 10 N 1.46496 * 109.47298 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00007 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00148 * 0.02562 * 11 10 9 13 13 C 1.50704 * 119.99704 * 180.02562 * 11 10 9 14 14 O 1.45207 * 109.46690 * 180.02562 * 13 11 10 15 15 C 1.34741 * 116.99625 * 180.02562 * 14 13 11 16 16 O 1.21491 * 120.00214 * 359.97438 * 15 14 13 17 17 C 1.47567 * 119.99847 * 179.97438 * 15 14 13 18 18 C 1.40376 * 119.87164 * 0.02562 * 17 15 14 19 19 C 1.36005 * 120.53757 * 179.97438 * 18 17 15 20 20 C 1.40314 * 120.04559 * 0.04545 * 19 18 17 21 21 C 1.41463 * 133.36137 * 180.02562 * 20 19 18 22 22 N 1.30199 * 108.72991 * 179.97438 * 21 20 19 23 23 N 1.40012 * 109.78762 * 359.77735 * 22 21 20 24 24 H 0.97000 * 125.97202 * 180.30441 * 23 22 21 25 25 C 1.37268 * 108.05639 * 0.36752 * 23 22 21 26 26 C 1.38895 * 133.66382 * 179.97438 * 25 23 22 27 27 H 0.96998 * 120.00444 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.47239 * 59.99617 * 9 7 2 29 29 H 1.09007 * 109.47003 * 300.00221 * 9 7 2 30 30 H 0.97004 * 119.99994 * 0.02562 * 10 9 7 31 31 H 1.08997 * 109.47387 * 60.00366 * 13 11 10 32 32 H 1.09002 * 109.46882 * 299.99788 * 13 11 10 33 33 H 1.07994 * 119.72961 * 0.02562 * 18 17 15 34 34 H 1.07994 * 119.97421 * 180.02562 * 19 18 17 35 35 H 1.08001 * 125.64022 * 359.94038 * 21 20 19 36 36 H 1.08001 * 120.19036 * 359.69953 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 7 4.0000 -2.5751 -0.0010 11 6 5.3251 -2.8213 -0.0020 12 8 6.1132 -1.8994 -0.0025 13 6 5.8275 -4.2421 -0.0024 14 8 7.2795 -4.2420 -0.0029 15 6 7.8913 -5.4425 -0.0039 16 8 7.2296 -6.4615 -0.0039 17 6 9.3649 -5.5197 -0.0049 18 6 10.1268 -4.3407 -0.0044 19 6 11.4857 -4.3960 -0.0048 20 6 12.1382 -5.6381 -0.0068 21 6 13.5004 -6.0197 -0.0073 22 7 13.5704 -7.3198 -0.0089 23 7 12.2804 -7.8639 -0.0045 24 1 12.0605 -8.8087 -0.0004 25 6 11.3812 -6.8268 -0.0083 26 6 9.9938 -6.7605 -0.0071 27 1 -0.4851 0.8400 0.0004 28 1 3.8753 -0.6802 0.8888 29 1 3.8746 -0.6798 -0.8912 30 1 3.3697 -3.3124 -0.0010 31 1 5.4636 -4.7559 -0.8922 32 1 5.4648 -4.7560 0.8878 33 1 9.6297 -3.3819 -0.0028 34 1 12.0628 -3.4832 -0.0040 35 1 14.3432 -5.3442 -0.0070 36 1 9.4067 -7.6671 -0.0072 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000025788821.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:34 Heat of formation + Delta-G solvation = -28.969069 kcal Electronic energy + Delta-G solvation = -22585.337808 eV Core-core repulsion = 18843.326076 eV Total energy + Delta-G solvation = -3742.011732 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.105 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.95406 -40.63411 -38.94744 -37.42667 -36.43407 -34.40477 -33.04924 -32.45624 -30.97887 -29.97517 -29.41280 -27.24713 -24.80949 -23.00924 -22.25317 -22.08964 -21.13552 -20.16073 -18.89865 -17.74552 -17.54611 -16.96585 -16.74798 -16.45585 -15.75072 -15.39066 -15.34868 -15.05756 -14.77612 -14.65205 -14.28706 -14.06308 -13.29312 -13.26746 -12.94421 -12.63309 -12.39955 -12.27037 -12.05298 -11.62218 -11.43997 -11.09307 -10.89754 -10.88370 -10.85676 -10.77878 -10.01940 -9.56477 -9.38694 -9.19952 -8.83734 -8.55339 -8.29884 -6.25799 -4.29100 -0.03132 0.98896 1.78332 2.00438 2.38577 2.39581 2.99123 3.24123 3.31070 3.37846 3.38551 3.78127 4.06350 4.22387 4.29309 4.33826 4.53084 4.73421 4.76826 4.96536 5.08407 5.12232 5.12974 5.18588 5.25291 5.43136 5.78844 5.90906 5.94639 6.14788 6.30152 6.70480 6.72024 6.98583 7.03221 7.06074 7.29500 7.48081 8.02102 8.38708 8.65119 8.77164 9.33075 10.85910 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.040065 B = 0.002285 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.702107 B =12251.396122 C =12929.651695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.547 4.547 8 H 0.081 0.919 9 C 0.222 3.778 10 N -0.699 5.699 11 C 0.502 3.498 12 O -0.536 6.536 13 C 0.050 3.950 14 O -0.321 6.321 15 C 0.509 3.491 16 O -0.504 6.504 17 C -0.069 4.069 18 C -0.104 4.104 19 C -0.051 4.051 20 C -0.151 4.151 21 C 0.071 3.929 22 N -0.242 5.242 23 N -0.501 5.501 24 H 0.444 0.556 25 C 0.111 3.889 26 C -0.069 4.069 27 H 0.268 0.732 28 H 0.028 0.972 29 H 0.024 0.976 30 H 0.399 0.601 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.150 0.850 34 H 0.140 0.860 35 H 0.198 0.802 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.285 -13.860 0.023 27.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.584 4.584 8 H 0.099 0.901 9 C 0.101 3.899 10 N -0.349 5.349 11 C 0.286 3.714 12 O -0.413 6.413 13 C -0.028 4.028 14 O -0.236 6.236 15 C 0.354 3.646 16 O -0.394 6.394 17 C -0.073 4.073 18 C -0.124 4.124 19 C -0.071 4.071 20 C -0.159 4.159 21 C -0.124 4.124 22 N -0.058 5.058 23 N -0.218 5.218 24 H 0.289 0.711 25 C -0.006 4.006 26 C -0.091 4.091 27 H 0.078 0.922 28 H 0.046 0.954 29 H 0.042 0.958 30 H 0.233 0.767 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.168 0.832 34 H 0.158 0.842 35 H 0.215 0.785 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 25.232 -14.370 0.024 29.037 hybrid contribution -0.899 0.508 -0.025 1.033 sum 24.332 -13.862 0.000 28.004 Atomic orbital electron populations 1.69875 1.06220 1.27529 1.49115 1.24796 0.94812 0.99213 0.93790 0.86809 0.80570 0.83174 0.79104 1.19786 1.20848 1.18443 1.21064 0.88340 0.95343 1.53695 0.90122 1.19559 0.95362 0.77917 0.97094 1.46066 1.04840 1.11577 1.72459 1.19890 0.83733 0.89349 0.78464 1.90700 1.55311 1.45624 1.49707 1.22877 0.77321 0.97505 1.05070 1.86595 1.22072 1.31472 1.83421 1.21046 0.88935 0.81611 0.73029 1.90853 1.66689 1.36073 1.45752 1.18808 0.89191 0.93979 1.05296 1.21065 0.93588 0.98464 0.99278 1.20393 0.93953 0.95917 0.96863 1.19220 0.93241 0.93927 1.09474 1.24025 0.96395 0.92317 0.99700 1.76714 1.00387 1.10910 1.17741 1.46118 1.01637 1.07915 1.66085 0.71058 1.18599 0.91657 0.88851 1.01451 1.20072 0.90280 0.97994 1.00756 0.92173 0.95393 0.95842 0.76677 0.88077 0.88084 0.83220 0.84219 0.78528 0.83849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.98 13.96 55.43 0.77 -25.21 16 2 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 3 Si 0.88 20.93 27.47 -169.99 -4.67 16.26 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.26 -6.14 6.54 56.52 0.37 -5.77 16 7 C -0.55 -14.59 9.83 -34.44 -0.34 -14.93 16 8 H 0.08 2.23 7.84 -52.49 -0.41 1.82 16 9 C 0.22 5.27 4.50 -5.20 -0.02 5.25 16 10 N -0.70 -13.44 5.55 -61.47 -0.34 -13.78 16 11 C 0.50 9.18 7.91 -10.98 -0.09 9.10 16 12 O -0.54 -11.83 16.50 -14.11 -0.23 -12.07 16 13 C 0.05 0.69 5.95 36.01 0.21 0.90 16 14 O -0.32 -4.63 8.98 -47.28 -0.42 -5.05 16 15 C 0.51 6.62 7.89 34.54 0.27 6.89 16 16 O -0.50 -7.24 16.11 -19.26 -0.31 -7.55 16 17 C -0.07 -0.74 5.87 -104.96 -0.62 -1.36 16 18 C -0.10 -1.00 9.53 -39.58 -0.38 -1.38 16 19 C -0.05 -0.39 10.04 -39.60 -0.40 -0.79 16 20 C -0.15 -1.26 6.17 -106.87 -0.66 -1.92 16 21 C 0.07 0.50 12.04 -17.02 -0.20 0.29 16 22 N -0.24 -2.07 12.57 30.86 0.39 -1.68 16 23 N -0.50 -3.86 7.45 32.35 0.24 -3.62 16 24 H 0.44 2.16 8.96 -182.66 -1.64 0.52 16 25 C 0.11 0.98 7.32 -84.17 -0.62 0.37 16 26 C -0.07 -0.65 9.61 -39.01 -0.38 -1.02 16 27 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 28 H 0.03 0.70 7.20 -51.93 -0.37 0.32 16 29 H 0.02 0.58 7.57 -51.93 -0.39 0.19 16 30 H 0.40 6.60 8.32 -40.82 -0.34 6.26 16 31 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 32 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.15 1.47 7.58 -52.49 -0.40 1.07 16 34 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 35 H 0.20 0.63 8.06 -52.49 -0.42 0.21 16 36 H 0.14 1.20 7.62 -52.49 -0.40 0.80 16 LS Contribution 327.24 15.07 4.93 4.93 Total: -1.00 -34.53 327.24 -7.76 -42.28 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -4.81 Total: 2.01 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: -3.31 Total: 3.48 kcal Atomic # 7 Polarization: -45.35 SS G_CDS: 1.06 Total: -44.29 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -0.97 Total: -24.67 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.67 Total: 16.26 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -34.53 -7.76 -42.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025788821.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.316 kcal (2) G-P(sol) polarization free energy of solvation -34.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds