Wall clock time and date at job start Tue Mar 31 2020 03:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 119.99606 * 2 1 4 4 H 1.48493 * 109.47156 * 270.00076 * 3 2 1 5 5 H 1.48499 * 109.46885 * 30.00184 * 3 2 1 6 6 H 1.48499 * 109.46911 * 150.00309 * 3 2 1 7 7 C 1.37873 * 120.00213 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00340 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00019 * 179.97438 * 7 2 1 10 10 N 1.46496 * 109.47298 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00007 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00148 * 0.02562 * 11 10 9 13 13 C 1.50704 * 119.99704 * 180.02562 * 11 10 9 14 14 O 1.45207 * 109.46690 * 180.02562 * 13 11 10 15 15 C 1.34741 * 116.99625 * 180.02562 * 14 13 11 16 16 O 1.21491 * 120.00214 * 359.97438 * 15 14 13 17 17 C 1.47567 * 119.99847 * 179.97438 * 15 14 13 18 18 C 1.40376 * 119.87164 * 0.02562 * 17 15 14 19 19 C 1.36005 * 120.53757 * 179.97438 * 18 17 15 20 20 C 1.40314 * 120.04559 * 0.04545 * 19 18 17 21 21 C 1.41463 * 133.36137 * 180.02562 * 20 19 18 22 22 N 1.30199 * 108.72991 * 179.97438 * 21 20 19 23 23 N 1.40012 * 109.78762 * 359.77735 * 22 21 20 24 24 H 0.97000 * 125.97202 * 180.30441 * 23 22 21 25 25 C 1.37268 * 108.05639 * 0.36752 * 23 22 21 26 26 C 1.38895 * 133.66382 * 179.97438 * 25 23 22 27 27 H 0.96998 * 120.00444 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.47239 * 59.99617 * 9 7 2 29 29 H 1.09007 * 109.47003 * 300.00221 * 9 7 2 30 30 H 0.97004 * 119.99994 * 0.02562 * 10 9 7 31 31 H 1.08997 * 109.47387 * 60.00366 * 13 11 10 32 32 H 1.09002 * 109.46882 * 299.99788 * 13 11 10 33 33 H 1.07994 * 119.72961 * 0.02562 * 18 17 15 34 34 H 1.07994 * 119.97421 * 180.02562 * 19 18 17 35 35 H 1.08001 * 125.64022 * 359.94038 * 21 20 19 36 36 H 1.08001 * 120.19036 * 359.69953 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 7 4.0000 -2.5751 -0.0010 11 6 5.3251 -2.8213 -0.0020 12 8 6.1132 -1.8994 -0.0025 13 6 5.8275 -4.2421 -0.0024 14 8 7.2795 -4.2420 -0.0029 15 6 7.8913 -5.4425 -0.0039 16 8 7.2296 -6.4615 -0.0039 17 6 9.3649 -5.5197 -0.0049 18 6 10.1268 -4.3407 -0.0044 19 6 11.4857 -4.3960 -0.0048 20 6 12.1382 -5.6381 -0.0068 21 6 13.5004 -6.0197 -0.0073 22 7 13.5704 -7.3198 -0.0089 23 7 12.2804 -7.8639 -0.0045 24 1 12.0605 -8.8087 -0.0004 25 6 11.3812 -6.8268 -0.0083 26 6 9.9938 -6.7605 -0.0071 27 1 -0.4851 0.8400 0.0004 28 1 3.8753 -0.6802 0.8888 29 1 3.8746 -0.6798 -0.8912 30 1 3.3697 -3.3124 -0.0010 31 1 5.4636 -4.7559 -0.8922 32 1 5.4648 -4.7560 0.8878 33 1 9.6297 -3.3819 -0.0028 34 1 12.0628 -3.4832 -0.0040 35 1 14.3432 -5.3442 -0.0070 36 1 9.4067 -7.6671 -0.0072 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000025788821.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:33 Heat of formation + Delta-G solvation = -53.081467 kcal Electronic energy + Delta-G solvation = -22586.383400 eV Core-core repulsion = 18843.326076 eV Total energy + Delta-G solvation = -3743.057324 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.105 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.58967 -41.67794 -40.41988 -38.19842 -37.48738 -36.18522 -34.44945 -33.66708 -31.81846 -30.89847 -30.56655 -28.82016 -25.70461 -24.04600 -23.66613 -22.70149 -22.06654 -21.71128 -19.75379 -19.28268 -18.37542 -18.24785 -17.84844 -17.61336 -16.95463 -16.89437 -16.29394 -16.02393 -15.92641 -15.72799 -15.28485 -14.90535 -14.73280 -14.66220 -14.33916 -13.84428 -13.79467 -13.61894 -13.07224 -12.90743 -12.69267 -12.30483 -12.04026 -11.94220 -11.91730 -11.85320 -11.65540 -11.49908 -10.96021 -10.91077 -10.02333 -9.89340 -9.17326 -8.38753 -6.46479 -0.76054 0.32924 1.05643 1.07843 1.35483 1.38208 1.49629 1.53087 1.65135 1.68880 2.29634 2.46970 2.67747 2.96663 3.44735 3.52142 3.65837 3.67873 3.82484 4.04770 4.05374 4.06012 4.12455 4.50591 4.64368 4.76606 4.80731 5.02478 5.07042 5.15670 5.25135 5.32074 5.34388 5.41425 5.67040 6.06632 6.18694 6.46970 6.48759 6.54045 6.73139 7.12738 7.28405 8.75725 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.040065 B = 0.002285 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.702107 B =12251.396122 C =12929.651695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.025 3.975 3 Si 0.938 3.062 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.257 1.257 7 C -0.548 4.548 8 H 0.061 0.939 9 C 0.232 3.768 10 N -0.697 5.697 11 C 0.506 3.494 12 O -0.575 6.575 13 C 0.058 3.942 14 O -0.335 6.335 15 C 0.513 3.487 16 O -0.522 6.522 17 C -0.085 4.085 18 C -0.117 4.117 19 C -0.037 4.037 20 C -0.159 4.159 21 C 0.080 3.920 22 N -0.264 5.264 23 N -0.500 5.500 24 H 0.453 0.547 25 C 0.101 3.899 26 C -0.068 4.068 27 H 0.272 0.728 28 H 0.018 0.982 29 H 0.017 0.983 30 H 0.413 0.587 31 H 0.125 0.875 32 H 0.125 0.875 33 H 0.144 0.856 34 H 0.171 0.829 35 H 0.235 0.765 36 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.641 -13.935 -0.008 30.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.176 4.176 3 Si 0.762 3.238 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.181 1.181 7 C -0.586 4.586 8 H 0.079 0.921 9 C 0.109 3.891 10 N -0.349 5.349 11 C 0.292 3.708 12 O -0.455 6.455 13 C -0.019 4.019 14 O -0.250 6.250 15 C 0.359 3.641 16 O -0.413 6.413 17 C -0.089 4.089 18 C -0.137 4.137 19 C -0.058 4.058 20 C -0.167 4.167 21 C -0.115 4.115 22 N -0.079 5.079 23 N -0.217 5.217 24 H 0.300 0.700 25 C -0.016 4.016 26 C -0.090 4.090 27 H 0.081 0.919 28 H 0.036 0.964 29 H 0.035 0.965 30 H 0.249 0.751 31 H 0.143 0.857 32 H 0.143 0.857 33 H 0.162 0.838 34 H 0.188 0.812 35 H 0.251 0.749 36 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 27.591 -14.502 -0.008 31.170 hybrid contribution -1.568 0.439 -0.014 1.628 sum 26.023 -14.063 -0.021 29.580 Atomic orbital electron populations 1.69983 1.07754 1.28651 1.50596 1.25621 0.95558 1.02792 0.93580 0.85842 0.79331 0.79163 0.79487 1.18962 1.20031 1.18102 1.21283 0.89894 0.94677 1.52763 0.92101 1.19174 0.93360 0.80322 0.96229 1.45857 1.05886 1.10363 1.72782 1.20508 0.82718 0.90906 0.76696 1.90679 1.56114 1.47418 1.51259 1.22792 0.77577 0.94165 1.07384 1.86585 1.22134 1.32520 1.83754 1.21377 0.89681 0.80797 0.72217 1.90836 1.67216 1.36341 1.46899 1.18794 0.87940 0.95032 1.07174 1.21074 0.94430 0.97767 1.00443 1.20667 0.93308 0.96964 0.94817 1.19521 0.94000 0.93929 1.09243 1.24640 0.96842 0.92172 0.97836 1.76713 1.00709 1.11841 1.18656 1.46188 1.01291 1.08358 1.65840 0.69975 1.18707 0.91622 0.89732 1.01551 1.20079 0.90694 0.97709 1.00493 0.91851 0.96386 0.96489 0.75094 0.85685 0.85708 0.83830 0.81151 0.74929 0.83410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.85 13.96 21.45 0.30 -54.55 16 2 C 0.02 1.38 5.47 84.65 0.46 1.84 16 3 Si 0.94 42.98 27.47 68.60 1.88 44.86 16 4 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 5 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 6 H -0.26 -11.55 6.54 99.48 0.65 -10.90 16 7 C -0.55 -29.45 9.83 25.60 0.25 -29.19 16 8 H 0.06 3.43 7.84 -2.91 -0.02 3.41 16 9 C 0.23 10.95 4.50 85.63 0.38 11.33 16 10 N -0.70 -26.33 5.55 -466.78 -2.59 -28.92 16 11 C 0.51 18.03 7.91 87.66 0.69 18.73 16 12 O -0.57 -25.16 16.50 15.76 0.26 -24.90 16 13 C 0.06 1.51 5.95 71.24 0.42 1.93 16 14 O -0.33 -9.36 8.98 -50.13 -0.45 -9.81 16 15 C 0.51 12.97 7.89 70.28 0.55 13.53 16 16 O -0.52 -14.54 16.11 19.86 0.32 -14.22 16 17 C -0.09 -1.78 5.87 -20.09 -0.12 -1.90 16 18 C -0.12 -2.12 9.53 22.27 0.21 -1.91 16 19 C -0.04 -0.49 10.04 22.26 0.22 -0.27 16 20 C -0.16 -2.29 6.17 -21.32 -0.13 -2.42 16 21 C 0.08 0.89 12.04 85.73 1.03 1.93 16 22 N -0.26 -3.98 12.57 -56.29 -0.71 -4.69 16 23 N -0.50 -6.99 7.45 -51.57 -0.38 -7.37 16 24 H 0.45 3.95 8.96 -213.38 -1.91 2.04 16 25 C 0.10 1.65 7.32 39.11 0.29 1.94 16 26 C -0.07 -1.22 9.61 22.64 0.22 -1.00 16 27 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 28 H 0.02 0.90 7.20 -2.38 -0.02 0.88 16 29 H 0.02 0.83 7.57 -2.38 -0.02 0.82 16 30 H 0.41 13.29 8.32 -92.71 -0.77 12.52 16 31 H 0.13 2.72 8.14 -2.39 -0.02 2.70 16 32 H 0.13 2.72 8.14 -2.39 -0.02 2.70 16 33 H 0.14 2.74 7.58 -2.91 -0.02 2.72 16 34 H 0.17 1.10 8.06 -2.91 -0.02 1.08 16 35 H 0.23 0.57 8.06 -2.91 -0.02 0.54 16 36 H 0.15 2.40 7.62 -2.91 -0.02 2.38 16 Total: -1.00 -74.02 327.24 1.55 -72.47 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -1.58 Total: 12.58 kcal Atomic # 6 Polarization: 10.05 SS G_CDS: 4.49 Total: 14.54 kcal Atomic # 7 Polarization: -92.14 SS G_CDS: -3.38 Total: -95.52 kcal Atomic # 8 Polarization: -49.06 SS G_CDS: 0.13 Total: -48.93 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 1.88 Total: 44.86 kcal Total: -74.02 1.55 -72.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025788821.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.388 kcal (2) G-P(sol) polarization free energy of solvation -74.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds