Wall clock time and date at job start Tue Mar 31 2020 03:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31420 * 1 3 3 Si 1.86800 * 120.00389 * 2 1 4 4 H 1.48501 * 109.46758 * 269.72273 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.72121 * 3 2 1 6 6 H 1.48496 * 109.47474 * 149.72156 * 3 2 1 7 7 C 1.38817 * 119.99650 * 179.72103 * 2 1 3 8 8 H 1.07999 * 119.99931 * 180.27481 * 7 2 1 9 9 O 1.34824 * 120.00467 * 0.27734 * 7 2 1 10 10 C 1.34917 * 117.00793 * 179.97438 * 9 7 2 11 11 O 1.21701 * 119.99380 * 0.02562 * 10 9 7 12 12 C 1.41718 * 120.00569 * 180.02562 * 10 9 7 13 13 N 1.29575 * 125.28870 * 359.69379 * 12 10 9 14 14 N 1.39343 * 113.96212 * 179.81289 * 13 12 10 15 15 C 1.39575 * 125.52932 * 180.17594 * 14 13 12 16 16 C 1.38979 * 120.07451 * 180.02562 * 15 14 13 17 17 C 1.38083 * 119.91218 * 179.72470 * 16 15 14 18 18 C 1.38296 * 120.08315 * 0.54795 * 17 16 15 19 19 C 1.38304 * 120.16256 * 359.72530 * 18 17 16 20 20 C 1.38080 * 120.07979 * 359.97438 * 19 18 17 21 21 C 1.47116 * 108.93306 * 0.45437 * 14 13 12 22 22 H 1.09001 * 110.58211 * 118.30414 * 21 14 13 23 23 C 1.50696 * 110.58402 * 241.20643 * 21 14 13 24 24 N 1.34780 * 119.99896 * 194.27416 * 23 21 14 25 25 O 1.21284 * 119.99986 * 14.26983 * 23 21 14 26 26 C 1.51194 * 125.29131 * 180.02562 * 12 10 9 27 27 H 0.97000 * 119.99861 * 179.97438 * 1 2 3 28 28 H 1.07999 * 120.04308 * 359.97438 * 16 15 14 29 29 H 1.08000 * 119.95712 * 180.25635 * 17 16 15 30 30 H 1.08006 * 119.92036 * 179.74790 * 18 17 16 31 31 H 1.08005 * 119.95745 * 180.02562 * 19 18 17 32 32 H 1.07998 * 120.04166 * 180.02562 * 20 19 18 33 33 H 0.96997 * 120.00203 * 359.97438 * 24 23 21 34 34 H 0.97001 * 119.99333 * 179.97438 * 24 23 21 35 35 H 1.09004 * 110.52604 * 298.62495 * 26 12 10 36 36 H 1.08999 * 110.52529 * 61.23414 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 2.5017 2.0429 -1.4001 5 1 1.4429 2.6543 0.6941 6 1 3.5429 1.4418 0.7059 7 6 2.0082 -1.2022 0.0059 8 1 3.0882 -1.2023 0.0103 9 8 1.3341 -2.3699 0.0059 10 6 2.0688 -3.5014 0.0112 11 8 3.2841 -3.4377 0.0162 12 6 1.4254 -4.7642 0.0110 13 7 0.1432 -4.9509 0.0117 14 7 -0.2333 -6.2925 0.0071 15 6 -1.5460 -6.7666 0.0033 16 6 -1.7926 -8.1343 -0.0005 17 6 -3.0927 -8.5996 0.0014 18 6 -4.1486 -7.7066 -0.0043 19 6 -3.9070 -6.3448 -0.0062 20 6 -2.6097 -5.8721 -0.0019 21 6 0.9776 -7.1281 0.0138 22 1 1.0122 -7.7453 0.9116 23 6 1.0359 -7.9864 -1.2235 24 7 1.8959 -9.0223 -1.2851 25 8 0.3088 -7.7450 -2.1637 26 6 2.1284 -6.1027 0.0172 27 1 -0.4850 -0.8401 -0.0004 28 1 -0.9685 -8.8323 -0.0009 29 1 -3.2851 -9.6624 0.0026 30 1 -5.1645 -8.0735 -0.0069 31 1 -4.7342 -5.6503 -0.0102 32 1 -2.4217 -4.8086 -0.0030 33 1 2.4775 -9.2152 -0.5332 34 1 1.9330 -9.5749 -2.0814 35 1 2.7432 -6.2156 -0.8759 36 1 2.7369 -6.2107 0.9150 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000029288465.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:45:52 Heat of formation + Delta-G solvation = -25.024197 kcal Electronic energy + Delta-G solvation = -24161.109849 eV Core-core repulsion = 20419.269180 eV Total energy + Delta-G solvation = -3741.840670 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.105 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.05241 -39.28549 -38.88640 -38.03061 -35.45488 -34.04916 -33.19939 -32.27698 -31.30147 -30.53744 -28.96496 -25.65328 -24.65787 -23.71260 -22.47405 -21.64579 -20.45105 -19.52377 -18.27552 -18.04119 -17.60177 -17.15031 -16.55218 -16.01173 -15.44639 -15.28388 -14.96049 -14.73916 -14.44570 -14.12481 -13.87861 -13.55366 -13.31264 -13.20991 -13.15942 -12.90571 -12.32951 -11.87299 -11.48823 -11.22553 -11.13873 -11.00378 -10.58938 -10.37585 -10.29791 -10.22929 -9.99938 -9.90150 -9.50781 -9.40370 -8.87369 -8.66072 -7.37547 -6.92248 -4.20682 1.13712 1.48694 1.85002 2.18482 2.41600 3.15453 3.24050 3.28267 3.45534 3.77812 3.81871 3.97004 4.01947 4.20972 4.44793 4.57611 4.70070 4.98061 5.01049 5.07898 5.22747 5.41192 5.44677 5.49629 5.55876 5.68859 5.80037 6.11916 6.38025 6.45254 6.48272 6.65147 6.68179 6.83935 6.95685 7.33336 7.45977 7.80258 7.94543 8.23171 8.34213 8.86343 9.55916 10.51868 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.016498 B = 0.004233 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.747598 B = 6612.810868 C = 8046.328356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.014 3.986 3 Si 1.103 2.897 4 H -0.278 1.278 5 H -0.274 1.274 6 H -0.279 1.279 7 C -0.444 4.444 8 H 0.095 0.905 9 O -0.207 6.207 10 C 0.451 3.549 11 O -0.547 6.547 12 C 0.069 3.931 13 N -0.164 5.164 14 N -0.449 5.449 15 C 0.239 3.761 16 C -0.172 4.172 17 C -0.083 4.083 18 C -0.166 4.166 19 C -0.082 4.082 20 C -0.154 4.154 21 C 0.090 3.910 22 H 0.114 0.886 23 C 0.507 3.493 24 N -0.852 5.852 25 O -0.512 6.512 26 C -0.093 4.093 27 H 0.288 0.712 28 H 0.111 0.889 29 H 0.121 0.879 30 H 0.119 0.881 31 H 0.125 0.875 32 H 0.136 0.864 33 H 0.403 0.597 34 H 0.404 0.596 35 H 0.106 0.894 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.156 -18.785 1.978 18.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.194 4.194 3 Si 0.926 3.074 4 H -0.204 1.204 5 H -0.199 1.199 6 H -0.204 1.204 7 C -0.521 4.521 8 H 0.113 0.887 9 O -0.110 6.110 10 C 0.299 3.701 11 O -0.444 6.444 12 C -0.121 4.121 13 N 0.023 4.977 14 N -0.250 5.250 15 C 0.142 3.858 16 C -0.194 4.194 17 C -0.102 4.102 18 C -0.186 4.186 19 C -0.100 4.100 20 C -0.175 4.175 21 C -0.020 4.020 22 H 0.131 0.869 23 C 0.289 3.711 24 N -0.418 5.418 25 O -0.385 6.385 26 C -0.133 4.133 27 H 0.098 0.902 28 H 0.129 0.871 29 H 0.139 0.861 30 H 0.137 0.863 31 H 0.143 0.857 32 H 0.154 0.846 33 H 0.231 0.769 34 H 0.236 0.764 35 H 0.124 0.876 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -2.547 -16.358 1.468 16.620 hybrid contribution 1.353 -2.739 -0.069 3.056 sum -1.194 -19.097 1.399 19.185 Atomic orbital electron populations 1.70475 1.06767 1.32371 1.39382 1.26843 0.96699 1.01419 0.94469 0.83009 0.74332 0.72379 0.77675 1.20434 1.19898 1.20418 1.22419 0.94283 0.81045 1.54400 0.88687 1.83743 1.40146 1.13987 1.73155 1.17527 0.85459 0.83326 0.83753 1.90728 1.13786 1.87085 1.52777 1.22614 0.90243 0.94575 1.04668 1.75284 1.16240 0.98097 1.08067 1.48008 1.02592 0.99651 1.74722 1.17227 0.80358 0.92318 0.95919 1.20435 0.97498 0.92329 1.09175 1.20757 0.91621 0.99317 0.98492 1.20968 0.98742 0.93314 1.05563 1.20975 0.95948 0.95546 0.97560 1.20879 0.91155 1.00293 1.05189 1.22268 0.87448 0.94747 0.97501 0.86886 1.20767 0.80136 0.80965 0.89260 1.43794 1.42404 1.32999 1.22562 1.90831 1.40831 1.69242 1.37625 1.21820 0.96625 0.88379 1.06440 0.90172 0.87081 0.86080 0.86284 0.85677 0.84642 0.76879 0.76422 0.87565 0.86457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.24 13.69 55.49 0.76 -24.48 16 2 C 0.01 0.39 5.50 -17.51 -0.10 0.29 16 3 Si 1.10 23.81 29.92 -169.99 -5.09 18.72 16 4 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 5 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 6 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 7 C -0.44 -13.01 9.65 30.95 0.30 -12.71 16 8 H 0.10 2.78 6.86 -52.49 -0.36 2.42 16 9 O -0.21 -5.94 9.06 -22.06 -0.20 -6.14 16 10 C 0.45 11.46 7.68 32.06 0.25 11.71 16 11 O -0.55 -14.50 16.08 -19.42 -0.31 -14.81 16 12 C 0.07 1.43 7.08 -81.97 -0.58 0.85 16 13 N -0.16 -3.43 11.25 33.98 0.38 -3.05 16 14 N -0.45 -7.85 3.53 -52.31 -0.18 -8.03 16 15 C 0.24 3.98 6.22 -83.79 -0.52 3.46 16 16 C -0.17 -2.39 8.69 -39.36 -0.34 -2.74 16 17 C -0.08 -1.00 10.04 -39.62 -0.40 -1.40 16 18 C -0.17 -2.00 10.04 -39.54 -0.40 -2.40 16 19 C -0.08 -1.11 10.04 -39.61 -0.40 -1.51 16 20 C -0.15 -2.56 9.64 -39.37 -0.38 -2.94 16 21 C 0.09 1.19 3.21 -68.15 -0.22 0.98 16 22 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 23 C 0.51 6.55 5.60 -10.99 -0.06 6.49 16 24 N -0.85 -6.31 8.87 31.22 0.28 -6.04 16 25 O -0.51 -9.18 16.54 5.55 0.09 -9.09 16 26 C -0.09 -1.35 6.31 -27.05 -0.17 -1.52 16 27 H 0.29 8.69 7.97 -40.82 -0.33 8.37 16 28 H 0.11 1.36 6.37 -52.49 -0.33 1.03 16 29 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 30 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 31 H 0.13 1.42 8.06 -52.48 -0.42 1.00 16 32 H 0.14 2.46 7.66 -52.49 -0.40 2.06 16 33 H 0.40 1.59 8.83 -40.82 -0.36 1.23 16 34 H 0.40 2.57 8.93 -40.82 -0.36 2.21 16 35 H 0.11 1.49 7.73 -51.93 -0.40 1.09 16 36 H 0.12 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 324.77 15.07 4.89 4.89 Total: -1.00 -37.18 324.77 -5.85 -43.04 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -3.46 Total: 6.43 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: -3.02 Total: -1.44 kcal Atomic # 7 Polarization: -42.83 SS G_CDS: 1.23 Total: -41.60 kcal Atomic # 8 Polarization: -29.62 SS G_CDS: -0.42 Total: -30.04 kcal Atomic # 14 Polarization: 23.81 SS G_CDS: -5.09 Total: 18.72 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -37.18 -5.85 -43.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000029288465.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.012 kcal (2) G-P(sol) polarization free energy of solvation -37.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds